CB291030

Overview
NameCB291030
Unique NameCB291030
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length824
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB291030 vs. ExPASy Swiss-Prot
Match: RL12_HUMAN (60S ribosomal protein L12 OS=Homo sapiens GN=RPL12 PE=1 SV=1)

HSP 1 Score: 238.424 bits (607), Expect = 3.635e-62
Identity = 114/164 (69.51%), Postives = 139/164 (84.76%), Query Frame = -2
Query:  278 MPPKFDPSQVVDVYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTVQNRQAKVAVVPSAAALVIKALKEPERDRKKTKNIKHNGNITLDDVIEIAKVMRPRSMAKDLSGTVKEILGTCVSVGCTVDGKDPRDLQQEITDGDVEIP 769
            MPPKFDP+++  VY+R TGGEVGA S+LAPKIGPLGLSPKK+G+DIAK T  DWKGLR+TVKLT+QNRQA++ VVPSA+AL+IKALKEP RDRKK KNIKH+GNIT D+++ IA+ MR RS+A++LSGT+KEILGT  SVGC VDG+ P D+  +I  G VE P
Sbjct:    1 MPPKFDPNEIKVVYLRCTGGEVGATSALAPKIGPLGLSPKKVGDDIAKATG-DWKGLRITVKLTIQNRQAQIEVVPSASALIIKALKEPPRDRKKQKNIKHSGNITFDEIVNIARQMRHRSLARELSGTIKEILGTAQSVGCNVDGRHPHDIIDDINSGAVECP 163          
BLAST of CB291030 vs. ExPASy Swiss-Prot
Match: RL12_BOVIN (60S ribosomal protein L12 OS=Bos taurus GN=RPL12 PE=2 SV=1)

HSP 1 Score: 238.424 bits (607), Expect = 3.635e-62
Identity = 114/164 (69.51%), Postives = 139/164 (84.76%), Query Frame = -2
Query:  278 MPPKFDPSQVVDVYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTVQNRQAKVAVVPSAAALVIKALKEPERDRKKTKNIKHNGNITLDDVIEIAKVMRPRSMAKDLSGTVKEILGTCVSVGCTVDGKDPRDLQQEITDGDVEIP 769
            MPPKFDP+++  VY+R TGGEVGA S+LAPKIGPLGLSPKK+G+DIAK T  DWKGLR+TVKLT+QNRQA++ VVPSA+AL+IKALKEP RDRKK KNIKH+GNIT D+++ IA+ MR RS+A++LSGT+KEILGT  SVGC VDG+ P D+  +I  G VE P
Sbjct:    1 MPPKFDPNEIKVVYLRCTGGEVGATSALAPKIGPLGLSPKKVGDDIAKATG-DWKGLRITVKLTIQNRQAQIEVVPSASALIIKALKEPPRDRKKQKNIKHSGNITFDEIVNIARQMRHRSLARELSGTIKEILGTAQSVGCNVDGRHPHDIIDDINSGAVECP 163          
BLAST of CB291030 vs. ExPASy Swiss-Prot
Match: RL12_CHILA (60S ribosomal protein L12 OS=Chinchilla lanigera GN=RPL12 PE=2 SV=1)

HSP 1 Score: 236.113 bits (601), Expect = 1.804e-61
Identity = 113/164 (68.90%), Postives = 139/164 (84.76%), Query Frame = -2
Query:  278 MPPKFDPSQVVDVYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTVQNRQAKVAVVPSAAALVIKALKEPERDRKKTKNIKHNGNITLDDVIEIAKVMRPRSMAKDLSGTVKEILGTCVSVGCTVDGKDPRDLQQEITDGDVEIP 769
            MPPKFDP+++  VY+R TGGEVGA S+LAPKIGPLGLSPKK+G+DIAK T  DWKGLR+TVKLT+QNRQA++ VVPSA+AL+IKALKEP RDRKK KNIKH+GNIT D+++ IA+ MR RS+A++LSGT+KEILGT  SVGC VD + P D+  +I +G VE P
Sbjct:    1 MPPKFDPNEIKVVYLRCTGGEVGATSALAPKIGPLGLSPKKVGDDIAKATG-DWKGLRITVKLTIQNRQAQIEVVPSASALIIKALKEPPRDRKKQKNIKHSGNITFDEIVNIARQMRHRSLARELSGTIKEILGTAQSVGCNVDNRHPHDIIDDINNGVVECP 163          
BLAST of CB291030 vs. ExPASy Swiss-Prot
Match: RL12_NEUCR (60S ribosomal protein L12 OS=Neurospora crassa GN=rpl-12 PE=3 SV=1)

HSP 1 Score: 228.024 bits (580), Expect = 4.913e-59
Identity = 109/164 (66.46%), Postives = 139/164 (84.76%), Query Frame = -2
Query:  278 MPPKFDPSQVVDVYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTVQNRQAKVAVVPSAAALVIKALKEPERDRKKTKNIKHNGNITLDDVIEIAKVMRPRSMAKDLSGTVKEILGTCVSVGCTVDGKDPRDLQQEITDGDVEIP 769
            MPPKFDP++V  + +R TGGEVGA+S+LAPKIGPLGLSPKK+GEDIAK T  DWKGLRVTVKLT+QNRQA V+VVP+A+ALVI+ALKEP RDRKK KNIKHN +++ D+++EIA+ MR +S +K+L GTV E+LGT  SVGC VDGK P+ +Q+ I  G++++P
Sbjct:    1 MPPKFDPNEVKVITLRATGGEVGASSALAPKIGPLGLSPKKVGEDIAKATG-DWKGLRVTVKLTIQNRQAAVSVVPTASALVIRALKEPPRDRKKEKNIKHNKSVSFDEIVEIARTMRFKSFSKELKGTVLEVLGTAFSVGCQVDGKSPKAVQEAIHAGEIDVP 163          
BLAST of CB291030 vs. ExPASy Swiss-Prot
Match: RL12_DICDI (60S ribosomal protein L12 OS=Dictyostelium discoideum GN=rpl12 PE=3 SV=1)

HSP 1 Score: 214.157 bits (544), Expect = 7.341e-55
Identity = 105/163 (64.42%), Postives = 133/163 (81.60%), Query Frame = -2
Query:  281 MPPKFDPSQVVDVYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTVQNRQAKVAVVPSAAALVIKALKEPERDRKKTKNIKHNGNITLDDVIEIAKVMRPRSMAKDLSGTVKEILGTCVSVGCTVDGKDPRDLQQEITDGDVEI 769
            MPPK DPS+ V+V++RV GGE GA S+LAPK+GPLG+SPKK+G+DIAK T + WKG++V+VKLT+QNR A   V+PSA+ALVIKALKEP RDRKK KNIKHNGNI L+++ +IAK MR +S+A D  G+V EILGT  SVGC V+GK PRD+Q  I  G++E+
Sbjct:    1 MPPKVDPSEKVEVFLRVCGGEAGAMSTLAPKLGPLGVSPKKVGDDIAKAT-QPWKGMKVSVKLTIQNRIAVPEVLPSASALVIKALKEPPRDRKKEKNIKHNGNIPLEEICKIAKTMRFKSLAVDFKGSVLEILGTAHSVGCKVNGKSPRDIQAGIQSGEIEV 162          
BLAST of CB291030 vs. ExPASy Swiss-Prot
Match: RL12_YEAST (60S ribosomal protein L12 OS=Saccharomyces cerevisiae GN=RPL12A PE=1 SV=1)

HSP 1 Score: 213.386 bits (542), Expect = 1.252e-54
Identity = 104/164 (63.41%), Postives = 134/164 (81.71%), Query Frame = -2
Query:  278 MPPKFDPSQVVDVYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTVQNRQAKVAVVPSAAALVIKALKEPERDRKKTKNIKHNGNITLDDVIEIAKVMRPRSMAKDLSGTVKEILGTCVSVGCTVDGKDPRDLQQEITDGDVEIP 769
            MPPKFDP++V  +Y+R  GGEVGA+++LAPKIGPLGLSPKK+GEDIAK T K++KG++VTV+L +QNRQA  +VVPSA++LVI ALKEP RDRKK KN+KH+GNI LD++IEIA+ MR +S  + L+   KEILGT  SVGC VD K+P D+ + I  G++EIP
Sbjct:    1 MPPKFDPNEVKYLYLRAVGGEVGASAALAPKIGPLGLSPKKVGEDIAKAT-KEFKGIKVTVQLKIQNRQAAASVVPSASSLVITALKEPPRDRKKDKNVKHSGNIQLDEIIEIARQMRDKSFGRTLASVTKEILGTAQSVGCRVDFKNPHDIIEGINAGEIEIP 163          
BLAST of CB291030 vs. ExPASy Swiss-Prot
Match: RL12_ENCCU (60S ribosomal protein L12 OS=Encephalitozoon cuniculi GN=RPL12 PE=1 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 2.535e-39
Identity = 82/153 (53.59%), Postives = 117/153 (76.47%), Query Frame = -2
Query:  278 VYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTVQNRQAKVAVVPSAAALVIKALKEPERDRKKTKNIKHNGNITLDDVIEIAKVMR-PRSMAKDLSGTVKEILGTCVSVGCTVDGKDPRDLQQEITDGDVEIP 733
            + ++V GGEV  A+ LA ++GPLGLS K +GEDI K TA D+K L+V V+L +++R+A V V PS A L+IK+LKEP RDRKK KNI HNG++ + +V++IA++ R  RS +  LSGTVKE+LGTC S+GC VDGK P+++ +EI  G++++P
Sbjct:   14 IKLQVVGGEVPGAT-LAQRVGPLGLSSKVVGEDIKKATA-DYKSLKVHVQLAIKDRKATVEVQPSVATLIIKSLKEPPRDRKKEKNILHNGSLRMTEVVDIARIARSSRSYSNSLSGTVKEVLGTCKSIGCKVDGKCPKEVTREIDAGEIKLP 164          
BLAST of CB291030 vs. ExPASy Swiss-Prot
Match: RL11_THEON (50S ribosomal protein L11P OS=Thermococcus onnurineus (strain NA1) GN=rpl11p PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 8.192e-22
Identity = 63/157 (40.13%), Postives = 96/157 (61.15%), Query Frame = -2
Query:  293 QVVDVYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTVQNRQAKV----AVVPSAAALVIKALKEPERDRKKTKNIKHN--GNITLDDVIEIAKVMRPRSMAKDLSGTVKEILGTCVSVGCTVDGKDPRDLQQEITDG 745
            QVV+V V   GG+      L P IGPLGL+ K++ ++I K T KD++G++V VK+ V++ + K       VP  + L+ K L  P    K +    H+  GN+T++ VI IAK    + +A DL    KE++GT +S+G TV+GKDPR++Q+EI +G
Sbjct:    3 QVVEVLVE--GGKASPGPPLGPAIGPLGLNVKQVVDEINKAT-KDFEGMQVPVKIIVEDPKKKTFRIEVGVPPVSQLIKKELGIP----KGSSEAGHSPVGNLTMEQVIRIAKAKMDQMLAADLKAAAKEVIGTALSMGVTVEGKDPREVQKEIDEG 152          
BLAST of CB291030 vs. ExPASy Swiss-Prot
Match: RL11_PYRFU (50S ribosomal protein L11P OS=Pyrococcus furiosus GN=rpl11p PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 3.113e-21
Identity = 64/158 (40.51%), Postives = 97/158 (61.39%), Query Frame = -2
Query:  293 PSQVVDVYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTVQ--NRQAKVAV-VPSAAALVIKALKEPERDRKKTKNIKHN--GNITLDDVIEIAKVMRPRSMAKDLSGTVKEILGTCVSVGCTVDGKDPRDLQQEITDG 751
            P QVV+V V   GG+      L P IGPLGL+ K++ + I  E  KD+ G++V VK+ V    +Q ++ V VP  + L+ K L       K +   KHN  GN+T++ VI+IAK+ + + +A  L    KE++GT +S+G TV+GKDPR++Q+EI +G
Sbjct:    2 PKQVVEVLVE--GGKATPGPPLGPAIGPLGLNVKQVVDKI-NEATKDFAGMQVPVKIIVDPVTKQFEIEVGVPPTSQLIKKELGL----EKGSGEPKHNIVGNLTMEQVIKIAKMKKDQMLALTLKAAAKEVIGTALSMGVTVEGKDPREVQKEIDEG 152          
BLAST of CB291030 vs. ExPASy Swiss-Prot
Match: RL11_ARCFU (50S ribosomal protein L11P OS=Archaeoglobus fulgidus GN=rpl11p PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 3.113e-21
Identity = 61/158 (38.61%), Postives = 98/158 (62.03%), Query Frame = -2
Query:  278 QVVDVYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTVQN-RQAKVAV-VPSAAALVIKALKEPERDRKKTKNIKHNGNITLDDVIEIAKVMRPRSMAKDLSGTVKEILGTCVSVGCTVDGKDPRDLQQEITDGDVEIP 745
            QVV+V V   GG+      L P IGPLGL+ K++ + I  E  KD++GL V VK+ V++ R  ++ V +P  +AL+ + L   +      + +   GN+T++ ++ IA++ R +S++  L   VKE+LGTC S+G TV+GK P++L + I +G VEIP
Sbjct:    3 QVVEVLV--PGGQASPGPPLGPAIGPLGLNVKQVVDKI-NEATKDYEGLSVPVKIIVKDDRSFEIEVGIPPVSALIKRELGIEKGASNPGREVV--GNLTMEQLLNIARIKRQQSLSYTLKEVVKEVLGTCNSMGITVEGKSPKELTRMIEEGQVEIP 155          
The following BLAST results are available for this feature:
BLAST of CB291030 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 66
Match NameE-valueIdentityDescription
RL12_HUMAN3.635e-6269.5160S ribosomal protein L12 OS=Homo sapiens GN=RPL12... [more]
RL12_BOVIN3.635e-6269.5160S ribosomal protein L12 OS=Bos taurus GN=RPL12 P... [more]
RL12_CHILA1.804e-6168.9060S ribosomal protein L12 OS=Chinchilla lanigera G... [more]
RL12_NEUCR4.913e-5966.4660S ribosomal protein L12 OS=Neurospora crassa GN=... [more]
RL12_DICDI7.341e-5564.4260S ribosomal protein L12 OS=Dictyostelium discoid... [more]
RL12_YEAST1.252e-5463.4160S ribosomal protein L12 OS=Saccharomyces cerevis... [more]
RL12_ENCCU2.535e-3953.5960S ribosomal protein L12 OS=Encephalitozoon cunic... [more]
RL11_THEON8.192e-2240.1350S ribosomal protein L11P OS=Thermococcus onnurin... [more]
RL11_PYRFU3.113e-2140.5150S ribosomal protein L11P OS=Pyrococcus furiosus ... [more]
RL11_ARCFU3.113e-2138.6150S ribosomal protein L11P OS=Archaeoglobus fulgid... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_02ba07_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_02ba07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB291030 ID=CB291030; Name=CB291030; organism=Citrus sinensis; type=EST; length=824bp
TTTTTTTTTTTTTTTTGCATTAGAAAATTTAAATTTCAAAGATCCAATAT
ACGGTTTTCTGAAGCATCATTCAACATAAGTCCACTAAATTAAACCTTAC
ATCTCCTAAATTCCAATAATAAAGCACTCGTTTAAAGCTCGAATAATTGG
AGACATCCTCAAAATCCTTGTAAAGATCCAAAACTGATAATTAAAAAAAA
AGGCACTGATATATAGAGATAAAAACAAAAATTAAAATCTAAAATAGACC
CCCTCACAAACAGAGTCTTCAATCAAGAGGAATTTCGACATCACCATCAG
TGATCTCCTGCTGCAGGTCCCTAGGGTCCTTGCCATCGACCGTACACCCA
ACAGAAACGCATGTGCCCAAAATCTCCTTAACGGTGCCACTCAAATCCTT
AGCCATCGACCTGGGCCGCATCACTTTTGCGATTTCGATGACGTCATCGA
GGGTAATGTTGCCGTTGTGCTTGATGTTCTTGGTCTTCTTCCTGTCCCTC
TCGGGTTCCTTGAGGGCTTTAATCACCAGGGCGGCGGCGGAGGGAACGAC
GGCGACCTTGGCCTGACGGTTCTGGACGGTGAGCTTGACGGTGACACGTA
AGCCCTTCCAGTCCTTGGCGGTTTCCTTGGCGATGTCCTCTCCGATTTTC
TTTGGGGAGAGACCGAGGGGACCGATCTTTGGGGCGAGGGAACTGGCGGC
TCCCACCTCGCCACCGGTCACGCGGACGTACACGTCCACCACTTGGCTCG
GGTCGAACTTCGGCGGCATGATTGCTCTGCTGGTTACGGCTACAAAGAGT
GTGTGAAGTGCTTTTTGCCTCGTG
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