CB291034

Overview
NameCB291034
Unique NameCB291034
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length670
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB291034 vs. ExPASy Swiss-Prot
Match: H2A2C_HUMAN (Histone H2A type 2-C OS=Homo sapiens GN=HIST2H2AC PE=1 SV=4)

HSP 1 Score: 129.413 bits (324), Expect = 1.644e-29
Identity = 66/105 (62.86%), Postives = 77/105 (73.33%), Query Frame = -3
Query:  222 LQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKTGTSGSKA 536
            LQFPVGR+ R L+ G YAERVGAGAP                 AGNAARDNKKTRI+PRH+QLA+RNDEEL+KLLG VTIA GGV+PNI  +LLPKKT +  +K+
Sbjct:   24 LQFPVGRVHRLLRKGNYAERVGAGAPVYMAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKKTESHKAKS 128          
BLAST of CB291034 vs. ExPASy Swiss-Prot
Match: H2A2C_BOVIN (Histone H2A type 2-C OS=Bos taurus GN=HIST2H2AC PE=2 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.644e-29
Identity = 66/105 (62.86%), Postives = 77/105 (73.33%), Query Frame = -3
Query:  222 LQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKTGTSGSKA 536
            LQFPVGR+ R L+ G YAERVGAGAP                 AGNAARDNKKTRI+PRH+QLA+RNDEEL+KLLG VTIA GGV+PNI  +LLPKKT +  +K+
Sbjct:   24 LQFPVGRVHRLLRKGNYAERVGAGAPVYMAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKKTESHKAKS 128          
BLAST of CB291034 vs. ExPASy Swiss-Prot
Match: H2A3_CHICK (Histone H2A-III OS=Gallus gallus PE=1 SV=2)

HSP 1 Score: 129.028 bits (323), Expect = 2.147e-29
Identity = 66/105 (62.86%), Postives = 76/105 (72.38%), Query Frame = -3
Query:  222 LQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKTGTSGSKA 536
            LQFPVGR+ R L+ G YAERVGAGAP                 AGN ARDNKKTRI+PRH+QLA+RNDEEL+KLLG VTIA GGV+PNI  +LLPKKT +  +KA
Sbjct:   24 LQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNPARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKKTDSHKAKA 128          
BLAST of CB291034 vs. ExPASy Swiss-Prot
Match: H2A_EMENI (Histone H2A OS=Emericella nidulans GN=htaA PE=3 SV=2)

HSP 1 Score: 128.642 bits (322), Expect = 2.804e-29
Identity = 65/102 (63.73%), Postives = 74/102 (72.55%), Query Frame = -3
Query:  231 LQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKTGTSG 536
            L FPVGR+ R L+ G YA+RVGAGAP                 AGNAARDNKKTRI+PRH+QLA+RNDEEL+KLLG VTIA GGV+PNIH  LLPKKT  +G
Sbjct:   25 LAFPVGRVHRLLRKGNYAQRVGAGAPVYLAAVLEYLAAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGHVTIAQGGVLPNIHQNLLPKKTPKAG 126          
BLAST of CB291034 vs. ExPASy Swiss-Prot
Match: H2A_COCIM (Histone H2A OS=Coccidioides immitis GN=HTA1 PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 2.804e-29
Identity = 66/108 (61.11%), Postives = 75/108 (69.44%), Query Frame = -3
Query:  213 LQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKTGTSGSKAADE 536
            L FPVGR+ R L+ G YA+RVGAGAP                 AGNAARDNKKTRI+PRH+QLA+RNDEEL+KLLG VTIA GGVMP IH  LLPKKT  +G   + E
Sbjct:   25 LAFPVGRVHRLLRKGNYAQRVGAGAPVYLAAVLEYLAAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGHVTIAQGGVMPYIHQNLLPKKTPKTGKNPSQE 132          
BLAST of CB291034 vs. ExPASy Swiss-Prot
Match: H2A2B_MOUSE (Histone H2A type 2-B OS=Mus musculus GN=Hist2h2ab PE=1 SV=3)

HSP 1 Score: 128.642 bits (322), Expect = 2.804e-29
Identity = 66/98 (67.35%), Postives = 73/98 (74.49%), Query Frame = -3
Query:  243 LQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKT 536
            LQFPVGR+ R L+ G YAERVGAGAP                 AGNAARDNKKTRI+PRH+QLAVRNDEEL+KLLG VTIA GGV+PNI  +LLPKKT
Sbjct:   24 LQFPVGRVHRLLRKGNYAERVGAGAPVYMAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAVRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKKT 121          
BLAST of CB291034 vs. ExPASy Swiss-Prot
Match: H2A2B_HUMAN (Histone H2A type 2-B OS=Homo sapiens GN=HIST2H2AB PE=1 SV=3)

HSP 1 Score: 128.642 bits (322), Expect = 2.804e-29
Identity = 66/98 (67.35%), Postives = 73/98 (74.49%), Query Frame = -3
Query:  243 LQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKT 536
            LQFPVGR+ R L+ G YAERVGAGAP                 AGNAARDNKKTRI+PRH+QLAVRNDEEL+KLLG VTIA GGV+PNI  +LLPKKT
Sbjct:   24 LQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAVRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKKT 121          
BLAST of CB291034 vs. ExPASy Swiss-Prot
Match: H2A1A_HUMAN (Histone H2A type 1-A OS=Homo sapiens GN=HIST1H2AA PE=1 SV=3)

HSP 1 Score: 128.642 bits (322), Expect = 2.804e-29
Identity = 66/105 (62.86%), Postives = 76/105 (72.38%), Query Frame = -3
Query:  222 LQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKTGTSGSKA 536
            LQFPVGRI R L+ G YAER+GAGAP                 AGNA+RDNKKTRI+PRH+QLA+RNDEEL+KLLG VTIA GGV+PNI  +LLPKKT +   KA
Sbjct:   24 LQFPVGRIHRLLRKGNYAERIGAGAPVYLAAVLEYLTAEILELAGNASRDNKKTRIIPRHLQLAIRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKKTESHHHKA 128          
BLAST of CB291034 vs. ExPASy Swiss-Prot
Match: H2A_MAIZE (Histone H2A OS=Zea mays PE=2 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 3.662e-29
Identity = 64/110 (58.18%), Postives = 77/110 (70.00%), Query Frame = -3
Query:  207 LQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKTGTSGSKAADEDS 536
            LQFPVGRI R+LK G+YA+ VG GAP                 AGNAARDNKKTRI+PRH+ LA+RNDEEL KLLG VTIA+GGV+PNI+ +LLPKKT    S    +++
Sbjct:   37 LQFPVGRIGRYLKKGRYAQXVGTGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIIPRHVLLAIRNDEELGKLLGGVTIAHGGVLPNINPVLLPKKTAEKASSGGSKEA 146          
BLAST of CB291034 vs. ExPASy Swiss-Prot
Match: H2A_CAEEL (Histone H2A OS=Caenorhabditis elegans GN=his-3 PE=1 SV=2)

HSP 1 Score: 128.257 bits (321), Expect = 3.662e-29
Identity = 71/123 (57.72%), Postives = 79/123 (64.23%), Query Frame = -3
Query:  240 MAGRGKTLXXXXXXXXXXXXXXXGLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKTG 608
            M+GRGK                 GLQFPVGR+ R L+ G YA+RVGAGAP                 AGNAARDNKKTRI PRH+QLAVRNDEEL+KLL  VTIA GGV+PNI  +LLPKKTG
Sbjct:    1 MSGRGKGGKAKTGGKAKSRSSRAGLQFPVGRLHRILRKGNYAQRVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIAPRHLQLAVRNDEELNKLLAGVTIAQGGVLPNIQAVLLPKKTG 123          
The following BLAST results are available for this feature:
BLAST of CB291034 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 235
Match NameE-valueIdentityDescription
H2A2C_HUMAN1.644e-2962.86Histone H2A type 2-C OS=Homo sapiens GN=HIST2H2AC ... [more]
H2A2C_BOVIN1.644e-2962.86Histone H2A type 2-C OS=Bos taurus GN=HIST2H2AC PE... [more]
H2A3_CHICK2.147e-2962.86Histone H2A-III OS=Gallus gallus PE=1 SV=2[more]
H2A_EMENI2.804e-2963.73Histone H2A OS=Emericella nidulans GN=htaA PE=3 SV... [more]
H2A_COCIM2.804e-2961.11Histone H2A OS=Coccidioides immitis GN=HTA1 PE=3 S... [more]
H2A2B_MOUSE2.804e-2967.35Histone H2A type 2-B OS=Mus musculus GN=Hist2h2ab ... [more]
H2A2B_HUMAN2.804e-2967.35Histone H2A type 2-B OS=Homo sapiens GN=HIST2H2AB ... [more]
H2A1A_HUMAN2.804e-2962.86Histone H2A type 1-A OS=Homo sapiens GN=HIST1H2AA ... [more]
H2A_MAIZE3.662e-2958.18Histone H2A OS=Zea mays PE=2 SV=1[more]
H2A_CAEEL3.662e-2957.72Histone H2A OS=Caenorhabditis elegans GN=his-3 PE=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_02ba09_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_02ba09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB291034 ID=CB291034; Name=CB291034; organism=Citrus sinensis; type=EST; length=670bp
TTTTTTTTTTTTTTTTTAAAAGCAATTCTTCTTCTATTAAGCAACTGAGA
GAAATTATACACAAACATAGCTATTTGAAATCCTAACTACAACCACAAAA
ACAACAAACTAACTAAACAAACACTAAAAAGGCAAATGTCACATAGCACA
ATTAACACAAAGAGTGTTGATCATATCACTTTGACTCTTCTAGTGATGAG
AATTTAACTGTCTTCATCAGCAGCCTTGGACCCTGAAGTTCCAGTCTTCT
TGGGAAGGAGAAGGTTGTGGATGTTGGGCATCACACCACCGTTAGCAATG
GTAACATCCCCAAGAAGCTTGCTGAGCTCCTCATCATTCCTGACAGCCAA
TTGGATGTGGCGAGGGACAATTCGTGTTTTCTTGTTGTCCCTTGCAGCAT
TTCCAGCTAATTCCAAAACCTCAGCGGCGAGATATTCAAGGACGGCGGCG
AGATAAACCGGGGCTCCGGCACCGACCCGTTCAGCATATTTCCCGGCTTT
CAGGAACCTGGCAATACGACCGACGGGAAATTGAAGCCCCGCTTTGCTGC
TACGTGAGGTGGCCTTCTTCGCCGCCCCGGACCCGAGAGTCTTGCCCCGA
CCCGCCATCTCAAGTGAAAAAGCTCTTAACGAAGAAAGGAAAATGGAAAG
AGCAAAAGGTTGAGACTTGG
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