CB291034

Overview
NameCB291034
Unique NameCB291034
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length670
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CB291034 vs. ExPASy Swiss-Prot
Match: H2AJ_RAT (Histone H2A.J OS=Rattus norvegicus GN=H2afj PE=2 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 3.662e-29
Identity = 66/105 (62.86%), Postives = 76/105 (72.38%), Query Frame = -3 
Query:  222 LQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKTGTSGSKA 536
            LQFPVGR+ R L+ G YAERVGAGAP                 AGNAARDNKKTRI+PRH+QLA+RNDEEL+KLLG VTIA GGV+PNI  +LLPKKT +   K+
Sbjct:   24 LQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPKKTESQKVKS 128
[Close]
BLAST of CB291034 vs. ExPASy Swiss-Prot
Match: H2AJ_MOUSE (Histone H2A.J OS=Mus musculus GN=H2afj PE=2 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 3.662e-29
Identity = 66/105 (62.86%), Postives = 76/105 (72.38%), Query Frame = -3 
Query:  222 LQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKTGTSGSKA 536
            LQFPVGR+ R L+ G YAERVGAGAP                 AGNAARDNKKTRI+PRH+QLA+RNDEEL+KLLG VTIA GGV+PNI  +LLPKKT +   K+
Sbjct:   24 LQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPKKTESQKVKS 128
[Close]
BLAST of CB291034 vs. ExPASy Swiss-Prot
Match: H2A2A_RAT (Histone H2A type 2-A OS=Rattus norvegicus GN=Hist2h2aa3 PE=1 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 3.662e-29
Identity = 65/98 (66.33%), Postives = 73/98 (74.49%), Query Frame = -3 
Query:  243 LQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKT 536
            LQFPVGR+ R L+ G YAERVGAGAP                 AGNAARDNKKTRI+PRH+QLA+RNDEEL+KLLG VTIA GGV+PNI  +LLPKKT
Sbjct:   24 LQFPVGRVHRLLRKGNYAERVGAGAPVYMAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKKT 121
[Close]
BLAST of CB291034 vs. ExPASy Swiss-Prot
Match: H2A2A_MOUSE (Histone H2A type 2-A OS=Mus musculus GN=Hist2h2aa1 PE=1 SV=3)

HSP 1 Score: 128.257 bits (321), Expect = 3.662e-29
Identity = 65/98 (66.33%), Postives = 73/98 (74.49%), Query Frame = -3 
Query:  243 LQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKT 536
            LQFPVGR+ R L+ G YAERVGAGAP                 AGNAARDNKKTRI+PRH+QLA+RNDEEL+KLLG VTIA GGV+PNI  +LLPKKT
Sbjct:   24 LQFPVGRVHRLLRKGNYAERVGAGAPVYMAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKKT 121
[Close]
BLAST of CB291034 vs. ExPASy Swiss-Prot
Match: H2A2A_HUMAN (Histone H2A type 2-A OS=Homo sapiens GN=HIST2H2AA3 PE=1 SV=3)

HSP 1 Score: 128.257 bits (321), Expect = 3.662e-29
Identity = 65/98 (66.33%), Postives = 73/98 (74.49%), Query Frame = -3 
Query:  243 LQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKT 536
            LQFPVGR+ R L+ G YAERVGAGAP                 AGNAARDNKKTRI+PRH+QLA+RNDEEL+KLLG VTIA GGV+PNI  +LLPKKT
Sbjct:   24 LQFPVGRVHRLLRKGNYAERVGAGAPVYMAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKKT 121
[Close]
BLAST of CB291034 vs. ExPASy Swiss-Prot
Match: H2A1_RAT (Histone H2A type 1 OS=Rattus norvegicus PE=1 SV=2)

HSP 1 Score: 128.257 bits (321), Expect = 3.662e-29
Identity = 65/98 (66.33%), Postives = 73/98 (74.49%), Query Frame = -3 
Query:  243 LQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKT 536
            LQFPVGR+ R L+ G YAERVGAGAP                 AGNAARDNKKTRI+PRH+QLA+RNDEEL+KLLG VTIA GGV+PNI  +LLPKKT
Sbjct:   24 LQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKKT 121
[Close]
BLAST of CB291034 vs. ExPASy Swiss-Prot
Match: H2A1_HUMAN (Histone H2A type 1 OS=Homo sapiens GN=HIST1H2AG PE=1 SV=2)

HSP 1 Score: 128.257 bits (321), Expect = 3.662e-29
Identity = 65/98 (66.33%), Postives = 73/98 (74.49%), Query Frame = -3 
Query:  243 LQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKT 536
            LQFPVGR+ R L+ G YAERVGAGAP                 AGNAARDNKKTRI+PRH+QLA+RNDEEL+KLLG VTIA GGV+PNI  +LLPKKT
Sbjct:   24 LQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKKT 121
[Close]
BLAST of CB291034 vs. ExPASy Swiss-Prot
Match: H2A1_BOVIN (Histone H2A type 1 OS=Bos taurus PE=1 SV=2)

HSP 1 Score: 128.257 bits (321), Expect = 3.662e-29
Identity = 65/98 (66.33%), Postives = 73/98 (74.49%), Query Frame = -3 
Query:  243 LQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKT 536
            LQFPVGR+ R L+ G YAERVGAGAP                 AGNAARDNKKTRI+PRH+QLA+RNDEEL+KLLG VTIA GGV+PNI  +LLPKKT
Sbjct:   24 LQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKKT 121
[Close]
BLAST of CB291034 vs. ExPASy Swiss-Prot
Match: H2A1J_HUMAN (Histone H2A type 1-J OS=Homo sapiens GN=HIST1H2AJ PE=1 SV=3)

HSP 1 Score: 128.257 bits (321), Expect = 3.662e-29
Identity = 65/98 (66.33%), Postives = 73/98 (74.49%), Query Frame = -3 
Query:  243 LQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKT 536
            LQFPVGR+ R L+ G YAERVGAGAP                 AGNAARDNKKTRI+PRH+QLA+RNDEEL+KLLG VTIA GGV+PNI  +LLPKKT
Sbjct:   24 LQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKKT 121
[Close]
BLAST of CB291034 vs. ExPASy Swiss-Prot
Match: H2A1H_HUMAN (Histone H2A type 1-H OS=Homo sapiens GN=HIST1H2AH PE=1 SV=3)

HSP 1 Score: 128.257 bits (321), Expect = 3.662e-29
Identity = 65/98 (66.33%), Postives = 73/98 (74.49%), Query Frame = -3 
Query:  243 LQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKT 536
            LQFPVGR+ R L+ G YAERVGAGAP                 AGNAARDNKKTRI+PRH+QLA+RNDEEL+KLLG VTIA GGV+PNI  +LLPKKT
Sbjct:   24 LQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKKT 121
The following BLAST results are available for this feature:
BLAST of CB291034 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 235
Match NameE-valueIdentityDescription
H2AJ_RAT3.662e-2962.86Histone H2A.J OS=Rattus norvegicus GN=H2afj PE=2 S... [more]
H2AJ_MOUSE3.662e-2962.86Histone H2A.J OS=Mus musculus GN=H2afj PE=2 SV=1[more]
H2A2A_RAT3.662e-2966.33Histone H2A type 2-A OS=Rattus norvegicus GN=Hist2... [more]
H2A2A_MOUSE3.662e-2966.33Histone H2A type 2-A OS=Mus musculus GN=Hist2h2aa1... [more]
H2A2A_HUMAN3.662e-2966.33Histone H2A type 2-A OS=Homo sapiens GN=HIST2H2AA3... [more]
H2A1_RAT3.662e-2966.33Histone H2A type 1 OS=Rattus norvegicus PE=1 SV=2[more]
H2A1_HUMAN3.662e-2966.33Histone H2A type 1 OS=Homo sapiens GN=HIST1H2AG PE... [more]
H2A1_BOVIN3.662e-2966.33Histone H2A type 1 OS=Bos taurus PE=1 SV=2[more]
H2A1J_HUMAN3.662e-2966.33Histone H2A type 1-J OS=Homo sapiens GN=HIST1H2AJ ... [more]
H2A1H_HUMAN3.662e-2966.33Histone H2A type 1-H OS=Homo sapiens GN=HIST1H2AH ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_02ba09_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_02ba09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB291034 ID=CB291034; Name=CB291034; organism=Citrus sinensis; type=EST; length=670bp
TTTTTTTTTTTTTTTTTAAAAGCAATTCTTCTTCTATTAAGCAACTGAGA
GAAATTATACACAAACATAGCTATTTGAAATCCTAACTACAACCACAAAA
ACAACAAACTAACTAAACAAACACTAAAAAGGCAAATGTCACATAGCACA
ATTAACACAAAGAGTGTTGATCATATCACTTTGACTCTTCTAGTGATGAG
AATTTAACTGTCTTCATCAGCAGCCTTGGACCCTGAAGTTCCAGTCTTCT
TGGGAAGGAGAAGGTTGTGGATGTTGGGCATCACACCACCGTTAGCAATG
GTAACATCCCCAAGAAGCTTGCTGAGCTCCTCATCATTCCTGACAGCCAA
TTGGATGTGGCGAGGGACAATTCGTGTTTTCTTGTTGTCCCTTGCAGCAT
TTCCAGCTAATTCCAAAACCTCAGCGGCGAGATATTCAAGGACGGCGGCG
AGATAAACCGGGGCTCCGGCACCGACCCGTTCAGCATATTTCCCGGCTTT
CAGGAACCTGGCAATACGACCGACGGGAAATTGAAGCCCCGCTTTGCTGC
TACGTGAGGTGGCCTTCTTCGCCGCCCCGGACCCGAGAGTCTTGCCCCGA
CCCGCCATCTCAAGTGAAAAAGCTCTTAACGAAGAAAGGAAAATGGAAAG
AGCAAAAGGTTGAGACTTGG
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