CB291035

Overview
NameCB291035
Unique NameCB291035
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length666
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CB291035 vs. ExPASy Swiss-Prot
Match: H2A_STRPU (Histone H2A, embryonic OS=Strongylocentrotus purpuratus PE=1 SV=2)

HSP 1 Score: 127.872 bits (320), Expect = 4.739e-29
Identity = 71/125 (56.80%), Postives = 82/125 (65.60%), Query Frame = -3 
Query:  230 MAGRGKTLXXXXXXXXXXXXXXXGLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKTGTS 604
            M+GRGK+                GLQFPVGR+ RFL+ G YA+RVG GAP                 AGNAARDNKK+RI+PRH+QLAVRNDEEL+KLLG VTIA GGV+PNI  +LLPKKT  S
Sbjct:    1 MSGRGKS--GKARTKAKTRSSRAGLQFPVGRVHRFLRKGNYAKRVGGGAPVYMAAVLEYLTAEILELAGNAARDNKKSRIIPRHLQLAVRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKKTAKS 123
[Close]
BLAST of CB291035 vs. ExPASy Swiss-Prot
Match: H2AX_XENLA (Histone H2A.x OS=Xenopus laevis GN=h2afx PE=1 SV=3)

HSP 1 Score: 127.872 bits (320), Expect = 4.739e-29
Identity = 72/136 (52.94%), Postives = 86/136 (63.24%), Query Frame = -3 
Query:  209 MAGRGKTLXXXXXXXXXXXXXXXGLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKT----GTSGSKAADE 604
            M+GRGK +                LQFPVGR+ R L+ G YA RVGAGAP                 AGNAARDNKK+RI+PRH+QLAVRNDEEL+KLLG VTIA GGV+PNI  +LLPKK+     TSG K++ +
Sbjct:    1 MSGRGKAVSKTRAKAKTRSSRAG-LQFPVGRVHRLLRKGNYAHRVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKSRIIPRHLQLAVRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKKSSGGVSTSGKKSSQQ 135
[Close]
BLAST of CB291035 vs. ExPASy Swiss-Prot
Match: H2AE_PSAMI (Histone H2A, embryonic OS=Psammechinus miliaris PE=3 SV=2)

HSP 1 Score: 127.872 bits (320), Expect = 4.739e-29
Identity = 71/125 (56.80%), Postives = 82/125 (65.60%), Query Frame = -3 
Query:  230 MAGRGKTLXXXXXXXXXXXXXXXGLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKTGTS 604
            M+GRGK+                GLQFPVGR+ RFL+ G YA+RVG GAP                 AGNAARDNKK+RI+PRH+QLAVRNDEEL+KLLG VTIA GGV+PNI  +LLPKKT  S
Sbjct:    1 MSGRGKS--GKARTKAKTRSSRAGLQFPVGRVHRFLRKGNYAKRVGGGAPVYMAAVLEYLTAEILELAGNAARDNKKSRIIPRHLQLAVRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKKTAKS 123
[Close]
BLAST of CB291035 vs. ExPASy Swiss-Prot
Match: H2A3_LYTPI (Histone H2A, sperm (Fragment) OS=Lytechinus pictus PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 4.739e-29
Identity = 65/101 (64.36%), Postives = 74/101 (73.27%), Query Frame = -3 
Query:  230 LQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKTGTS 532
            LQFPVGR+ RFL+ G YA+RVGAGAP                 AGNAA DNKKTRI+PRH+QLA+RNDEEL+KLLG VTIA GGV+PNI  +LLPKKT  S
Sbjct:   10 LQFPVGRVHRFLRKGNYAQRVGAGAPVYLAAVFEYLAAEILELAGNAAPDNKKTRIIPRHLQLAIRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKKTAKS 110
[Close]
BLAST of CB291035 vs. ExPASy Swiss-Prot
Match: H2A1_PICST (Histone H2A.1 OS=Pichia stipitis GN=HTA2 PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 4.739e-29
Identity = 66/108 (61.11%), Postives = 79/108 (73.15%), Query Frame = -3 
Query:  209 LQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKTGTSGSKAADE 532
            L FPVGR+ R L+ G YA+RVG+GAP                 AGNAARDNKK+RI+PRH+QLA+RNDEEL+KLLG VTIA GGV+PNIH  LLPKK+G S +KA+ E
Sbjct:   24 LTFPVGRVHRLLRKGNYAQRVGSGAPVYLTSVLEYLAAEILELAGNAARDNKKSRIIPRHLQLAIRNDEELNKLLGHVTIAQGGVLPNIHQNLLPKKSGKS-AKASQE 130
[Close]
BLAST of CB291035 vs. ExPASy Swiss-Prot
Match: H2A1K_MOUSE (Histone H2A type 1-K OS=Mus musculus GN=Hist1h2ak PE=1 SV=3)

HSP 1 Score: 127.872 bits (320), Expect = 4.739e-29
Identity = 65/100 (65.00%), Postives = 74/100 (74.00%), Query Frame = -3 
Query:  233 LQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKTGT 532
            LQFPVGR+ R L+ G Y+ERVGAGAP                 AGNAARDNKKTRI+PRH+QLA+RNDEEL+KLLG VTIA GGV+PNI  +LLPKKT T
Sbjct:   24 LQFPVGRVHRLLRKGNYSERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPKKTET 123
[Close]
BLAST of CB291035 vs. ExPASy Swiss-Prot
Match: H2A1E_RAT (Histone H2A type 1-E OS=Rattus norvegicus PE=1 SV=2)

HSP 1 Score: 127.872 bits (320), Expect = 4.739e-29
Identity = 65/98 (66.33%), Postives = 73/98 (74.49%), Query Frame = -3 
Query:  239 LQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKT 532
            LQFPVGR+ R L+ G YAERVGAGAP                 AGNAARDNKKTRI+PRH+QLA+RNDEEL+KLLG VTIA GGV+PNI  +LLPKKT
Sbjct:   24 LQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPKKT 121
[Close]
BLAST of CB291035 vs. ExPASy Swiss-Prot
Match: H2A1C_RAT (Histone H2A type 1-C OS=Rattus norvegicus PE=1 SV=2)

HSP 1 Score: 127.872 bits (320), Expect = 4.739e-29
Identity = 65/98 (66.33%), Postives = 73/98 (74.49%), Query Frame = -3 
Query:  239 LQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKT 532
            LQFPVGR+ R L+ G YAERVGAGAP                 AGNAARDNKKTRI+PRH+QLA+RNDEEL+KLLG VTIA GGV+PNI  +LLPKKT
Sbjct:   24 LQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPKKT 121
[Close]
BLAST of CB291035 vs. ExPASy Swiss-Prot
Match: H2A1C_HUMAN (Histone H2A type 1-C OS=Homo sapiens GN=HIST1H2AC PE=1 SV=3)

HSP 1 Score: 127.872 bits (320), Expect = 4.739e-29
Identity = 65/98 (66.33%), Postives = 73/98 (74.49%), Query Frame = -3 
Query:  239 LQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKT 532
            LQFPVGR+ R L+ G YAERVGAGAP                 AGNAARDNKKTRI+PRH+QLA+RNDEEL+KLLG VTIA GGV+PNI  +LLPKKT
Sbjct:   24 LQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPKKT 121
[Close]
BLAST of CB291035 vs. ExPASy Swiss-Prot
Match: H2AL_STRPU (Late histone H2A.L3 OS=Strongylocentrotus purpuratus PE=1 SV=2)

HSP 1 Score: 127.487 bits (319), Expect = 6.190e-29
Identity = 65/98 (66.33%), Postives = 73/98 (74.49%), Query Frame = -3 
Query:  239 LQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKT 532
            LQFPVGR+ RFL+ G YA+RVGAGAP                 AGNAARDNKKTRI+PRH+QLAVRNDEEL+KLL  VTIA GGV+PNI  +LLPKKT
Sbjct:   24 LQFPVGRVHRFLRKGNYAQRVGAGAPVYLAAVLEYLAAEILELAGNAARDNKKTRIIPRHLQLAVRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKKT 121
The following BLAST results are available for this feature:
BLAST of CB291035 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 235
Match NameE-valueIdentityDescription
H2A_STRPU4.739e-2956.80Histone H2A, embryonic OS=Strongylocentrotus purpu... [more]
H2AX_XENLA4.739e-2952.94Histone H2A.x OS=Xenopus laevis GN=h2afx PE=1 SV=3[more]
H2AE_PSAMI4.739e-2956.80Histone H2A, embryonic OS=Psammechinus miliaris PE... [more]
H2A3_LYTPI4.739e-2964.36Histone H2A, sperm (Fragment) OS=Lytechinus pictus... [more]
H2A1_PICST4.739e-2961.11Histone H2A.1 OS=Pichia stipitis GN=HTA2 PE=3 SV=1[more]
H2A1K_MOUSE4.739e-2965.00Histone H2A type 1-K OS=Mus musculus GN=Hist1h2ak ... [more]
H2A1E_RAT4.739e-2966.33Histone H2A type 1-E OS=Rattus norvegicus PE=1 SV=... [more]
H2A1C_RAT4.739e-2966.33Histone H2A type 1-C OS=Rattus norvegicus PE=1 SV=... [more]
H2A1C_HUMAN4.739e-2966.33Histone H2A type 1-C OS=Homo sapiens GN=HIST1H2AC ... [more]
H2AL_STRPU6.190e-2966.33Late histone H2A.L3 OS=Strongylocentrotus purpurat... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_02ba09_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_02ba09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB291035 ID=CB291035; Name=CB291035; organism=Citrus sinensis; type=EST; length=666bp
TTTTTTTTTTTTTAAAAGCAATTCTTCTTCTATTAAGCAACTGATAGAAA
TTATACACAAACATAGCTATTTGAAATCCTACCTACAACCACAAAAACAA
CAAACTAACTAAACAAACACTAAAAAGGCAAATGTCACATAGCACAATTA
ACACAAAGAGTGTTGATCATATCACTTTGACTCTTCTAGTGATGAGAATT
TAACTGTCTTCATCAGCAGCCTTGGACCCTGAAGTTCCAGTCTTCTTGGG
AAGGAGAAGGTTGTGGATGTTGGGCATCACACCACCGTTAGCAATGGTAA
CATCCCCAAGAAGCTTGCTGAGCTCCTCATCATTCCTGACAGCCAATTGG
ATGTGGCGAGGGACAATTCGTGTTTTCTTGTTGTCCCTTGCAGCATTTCC
AGCTAATTCCAAAACCTCAGCGGCGAGATATTCAAGGACGGCGGCGAGAT
AAACCGGGGCTCCGGCACCGACCCGTTCAGCATATTTCCCGGCTTTCAGG
AACCTGGCAATACGACCGACGGGAAATTGAAGCCCCGCTTTGCTGCTACG
TGAGGTGGCCTTCTTCGCCGCCCCGGACCCGAGAGTCTTGCCCCGACCCG
CCATCTCAAGTGAAAAAGCTCTTAACGAAGAAAGGAAAATGGAAAGAGCA
AAAGGTTGAGACTTGG
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