CB291036

Overview
NameCB291036
Unique NameCB291036
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length841
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB291036 vs. ExPASy Swiss-Prot
Match: PRS8A_ARATH (26S protease regulatory subunit 8 homolog A OS=Arabidopsis thaliana GN=RPT6A PE=2 SV=1)

HSP 1 Score: 211.846 bits (538), Expect = 3.742e-54
Identity = 110/178 (61.80%), Postives = 136/178 (76.40%), Query Frame = -2
Query:  307 GSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVG-GDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLARLCPNSTGADIRSVCTEAGMFAIRARRKTVTEKDFLDAVNKVIK 837
            GSELVQKY+GEG+RMVRELF MAR     I+F DE+D+IG AR + G G GD+EVQRTMLE++NQLDGF+A   IKVLMATNR D LD ALLRPGR+DRK+EF  P+ ESR  I KIH+R MN  R I  + +A     ++GA++++VCTEAGMFA+R RR  VT++DF  AV KV+K
Sbjct:  228 GSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRFDILKIHSRKMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRVHVTQEDFEMAVAKVMK 405          
BLAST of CB291036 vs. ExPASy Swiss-Prot
Match: PSMR_THEGJ (Proteasome-activating nucleotidase OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=pan PE=3 SV=1)

HSP 1 Score: 211.46 bits (537), Expect = 4.887e-54
Identity = 98/177 (55.37%), Postives = 136/177 (76.84%), Query Frame = -2
Query:  310 IGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLARLCPNSTGADIRSVCTEAGMFAIRARRKTVTEKDFLDAVNKVI 840
            +GSELV+K++GEGAR+V ELF+MA+ K   I+F DE+DAIG  R D+  GG+ EV RT+++++ ++DGFD RGN+KV+ ATNRPD LDPALLRPGR DR +E  LPD   R +I K+HTR MN  R++   ++A +   ++GAD++++ TEAGMFAIR RR  VT++DFL AV+KV+
Sbjct:  204 VGSELVRKFIGEGARLVHELFEMAKEKAPTIIFIDEIDAIGAKRMDETTGGEREVNRTLMQLLAEMDGFDPRGNVKVIAATNRPDILDPALLRPGRFDRLIEVPLPDFRGRLEILKVHTRKMNL-RNVDLSIIADITEGASGADLKAIATEAGMFAIRDRRTYVTQEDFLKAVDKVL 379          
BLAST of CB291036 vs. ExPASy Swiss-Prot
Match: PRS8_SCHPO (26S protease regulatory subunit 8 homolog OS=Schizosaccharomyces pombe GN=let1 PE=2 SV=1)

HSP 1 Score: 211.075 bits (536), Expect = 6.383e-54
Identity = 107/177 (60.45%), Postives = 136/177 (76.84%), Query Frame = -2
Query:  310 GSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVG-GDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLARLCPNSTGADIRSVCTEAGMFAIRARRKTVTEKDFLDAVNKVI 837
            GSELVQKY+GEG+RMVRELF MAR     I+F DE+D+IG +R D   G GD+EVQRTMLE++NQLDGF+A  NIKV+MATNR D LDPALLRPGR+DRK+EF  P  E+R +I +IH+R+MN  R I  + +A     ++GA+++ VCTEAGMFA+R RR  VT++DF  AV KV+
Sbjct:  212 GSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRSDSSGGSGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDPALLRPGRIDRKIEFPPPSAEARAEILRIHSRSMNLTRGIDLKSIAEKMNGASGAELKGVCTEAGMFALRERRVHVTQEDFELAVAKVL 388          
BLAST of CB291036 vs. ExPASy Swiss-Prot
Match: PSMR_PYRHO (Proteasome-activating nucleotidase OS=Pyrococcus horikoshii GN=pan PE=3 SV=1)

HSP 1 Score: 210.305 bits (534), Expect = 1.089e-53
Identity = 98/182 (53.85%), Postives = 136/182 (74.73%), Query Frame = -2
Query:  295 IGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLARLCPNSTGADIRSVCTEAGMFAIRARRKTVTEKDFLDAVNKVIKGYQK 840
            +GSELV+KY+GEGAR+V ELF++A+ K   I+F DE+DAIG  R D+  GG+ EV RT+++++ ++DGFD RGN+KV+ ATNRPD LDPALLRPGR DR +E  LPD E R +I K+HTR M   + +    +A +   ++GAD++++ TEAGMFAIR RR  VT++DFL AV+KV+   +K
Sbjct:  206 VGSELVRKYIGEGARLVHELFELAKEKAPTIIFIDEIDAIGAKRMDETTGGEREVNRTLMQLLAEMDGFDPRGNVKVIAATNRPDILDPALLRPGRFDRLIEVPLPDFEGRLEILKVHTRRMKL-KGVDLRAIAEMTEGASGADLKAIATEAGMFAIRERRTYVTQEDFLKAVDKVLGNERK 386          
BLAST of CB291036 vs. ExPASy Swiss-Prot
Match: PRS4_DICDI (26S protease regulatory subunit 4 homolog OS=Dictyostelium discoideum GN=psmC1 PE=1 SV=1)

HSP 1 Score: 209.534 bits (532), Expect = 1.857e-53
Identity = 99/188 (52.66%), Postives = 140/188 (74.47%), Query Frame = -2
Query:  277 IGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLARLCPNSTGADIRSVCTEAGMFAIRARRKTVTEKDFLDAVNKVIKGYQKFSATPK 840
            +GSEL+QKY+G+G ++VRELF++A      IVF DE+DA+G  R+D   GG+ E+QRTMLE++NQLDGFDAR ++KV+MATNR +TLDPAL+RPGR+DRK+EF LPD++++ +IF+IHT  MN   D+  E       + +GADI+++CTE+G+ A+R RR  VT  DF  A  KV+  Y+K +  P+
Sbjct:  250 VGSELIQKYLGDGPKLVRELFRVADECAPSIVFIDEIDAVGTKRYDSQSGGEREIQRTMLELLNQLDGFDARTDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDIKTKRKIFEIHTAKMNLSEDVNLEEFVMSKDDLSGADIKAICTESGLLALRERRMRVTHTDFKKAKEKVL--YRKTAGAPE 435          
BLAST of CB291036 vs. ExPASy Swiss-Prot
Match: PSMR_PYRKO (Proteasome-activating nucleotidase OS=Pyrococcus kodakaraensis GN=pan PE=3 SV=1)

HSP 1 Score: 209.149 bits (531), Expect = 2.426e-53
Identity = 97/177 (54.80%), Postives = 135/177 (76.27%), Query Frame = -2
Query:  310 IGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLARLCPNSTGADIRSVCTEAGMFAIRARRKTVTEKDFLDAVNKVI 840
            +GSELV+K++GEGAR+V ELF++A+ K   I+F DE+DAIG  R D+  GG+ EV RT+++++ ++DGFD RGN+KV+ ATNRPD LDPALLRPGR DR +E  LPD + R +I K+HTR MN  + +   ++A +   ++GAD++++ TEAGMFAIR RR  VT+ DFL AV+KVI
Sbjct:  204 VGSELVRKFIGEGARLVHELFELAKEKAPTIIFIDEIDAIGAKRMDETTGGEREVNRTLMQLLAEMDGFDPRGNVKVIAATNRPDILDPALLRPGRFDRLIEVPLPDYQGRLEILKVHTRKMNL-KGVDLRVIAEITEGASGADLKAIATEAGMFAIRDRRTYVTQDDFLKAVDKVI 379          
BLAST of CB291036 vs. ExPASy Swiss-Prot
Match: PRS8_YEAST (26S protease regulatory subunit 8 homolog OS=Saccharomyces cerevisiae GN=RPT6 PE=1 SV=4)

HSP 1 Score: 209.149 bits (531), Expect = 2.426e-53
Identity = 103/181 (56.91%), Postives = 133/181 (73.48%), Query Frame = -2
Query:  295 GSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLARLCPNSTGADIRSVCTEAGMFAIRARRKTVTEKDFLDAVNKVIKGYQK 837
            G+ELVQKY+GEG+RMVRELF MAR     I+F DE+D+IG  R +   GGD+EVQRTMLE++NQLDGF+   NIK++MATNR D LDPALLRPGR+DRK+EF  P + +R +I +IH+R MN  R I    +A      +GAD++ VCTEAGM+A+R RR  VT++DF  AV KV+   Q+
Sbjct:  215 GAELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSKNIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLTRGINLRKVAEKMNGCSGADVKGVCTEAGMYALRERRIHVTQEDFELAVGKVMNKNQE 395          
BLAST of CB291036 vs. ExPASy Swiss-Prot
Match: PRS8_ENCCU (26S protease regulatory subunit 8 homolog OS=Encephalitozoon cuniculi GN=RPT6 PE=1 SV=1)

HSP 1 Score: 208.764 bits (530), Expect = 3.168e-53
Identity = 103/177 (58.19%), Postives = 134/177 (75.71%), Query Frame = -2
Query:  307 GSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLARLCPNSTGADIRSVCTEAGMFAIRARRKTVTEKDFLDAVNKVIK 837
            GSELVQKY+GEG+R+VRELF MAR     I+F DE+D+IG  R D   G D+EVQRTMLE++NQLDGF++  NIKV+MATNR D LDPALLR GR+DRK+EF  P+  +R +I KIH+R MN  + I  E +A      +GA++++VCTEAGM+A+R RR  VT++DF  AV+KV+K
Sbjct:  263 GSELVQKYIGEGSRLVRELFIMAREHAPSIIFMDEIDSIGSTRGDSNKGSDSEVQRTMLELLNQLDGFESHNNIKVIMATNRIDILDPALLRTGRIDRKIEFPPPNESARLEILKIHSRKMNLTKGIDLETIASKMVGCSGAEVKAVCTEAGMYALRERRVHVTQEDFEMAVHKVLK 439          
BLAST of CB291036 vs. ExPASy Swiss-Prot
Match: PS10B_ARATH (26S protease regulatory subunit S10B homolog B OS=Arabidopsis thaliana GN=RPT4B PE=2 SV=1)

HSP 1 Score: 208.379 bits (529), Expect = 4.137e-53
Identity = 95/176 (53.98%), Postives = 129/176 (73.30%), Query Frame = -2
Query:  313 IGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLARLCPNSTGADIRSVCTEAGMFAIRARRKTVTEKDFLDAVNKV 840
            + S ++ KY+GE AR++RE+F  AR  + CI+F DE+DAIGG RF +G   D E+QRT++E++NQLDGFD  G +K++MATNRPD LDPALLRPGRLDRK+E  LP+ +SR +I KIH   +    +I +E + +L     GAD+R++CTEAGMFAIRA R  V  +DF+ AV K+
Sbjct:  205 VSSAIIDKYIGESARLIREMFNYAREHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHASGIAKHGEIDYEAIVKLGEGFNGADLRNICTEAGMFAIRAERDYVIHEDFMKAVRKL 380          
BLAST of CB291036 vs. ExPASy Swiss-Prot
Match: PS10A_ARATH (26S protease regulatory subunit 10B homolog A OS=Arabidopsis thaliana GN=RPT4A PE=2 SV=1)

HSP 1 Score: 208.379 bits (529), Expect = 4.137e-53
Identity = 95/176 (53.98%), Postives = 128/176 (72.73%), Query Frame = -2
Query:  313 IGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLARLCPNSTGADIRSVCTEAGMFAIRARRKTVTEKDFLDAVNKV 840
            + S ++ KY+GE AR++RE+F  AR  + CI+F DE+DAIGG RF +G   D E+QRT++E++NQLDGFD  G +K++MATNRPD LDPALLRPGRLDRK+E  LP+ +SR  I KIH   +    +I +E + +L     GAD+R++CTEAGMFAIRA R  V  +DF+ AV K+
Sbjct:  205 VSSAIIDKYIGESARLIREMFNYAREHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDNLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMDILKIHAAGIAKHGEIDYEAIVKLAEGFNGADLRNICTEAGMFAIRAERDYVIHEDFMKAVRKL 380          
The following BLAST results are available for this feature:
BLAST of CB291036 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 370
Match NameE-valueIdentityDescription
PRS8A_ARATH3.742e-5461.8026S protease regulatory subunit 8 homolog A OS=Ara... [more]
PSMR_THEGJ4.887e-5455.37Proteasome-activating nucleotidase OS=Thermococcus... [more]
PRS8_SCHPO6.383e-5460.4526S protease regulatory subunit 8 homolog OS=Schiz... [more]
PSMR_PYRHO1.089e-5353.85Proteasome-activating nucleotidase OS=Pyrococcus h... [more]
PRS4_DICDI1.857e-5352.6626S protease regulatory subunit 4 homolog OS=Dicty... [more]
PSMR_PYRKO2.426e-5354.80Proteasome-activating nucleotidase OS=Pyrococcus k... [more]
PRS8_YEAST2.426e-5356.9126S protease regulatory subunit 8 homolog OS=Sacch... [more]
PRS8_ENCCU3.168e-5358.1926S protease regulatory subunit 8 homolog OS=Encep... [more]
PS10B_ARATH4.137e-5353.9826S protease regulatory subunit S10B homolog B OS=... [more]
PS10A_ARATH4.137e-5353.9826S protease regulatory subunit 10B homolog A OS=A... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_02ba10_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_02ba10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB291036 ID=CB291036; Name=CB291036; organism=Citrus sinensis; type=EST; length=841bp
TTTTTTTTTTTTTAGAAAGAAATATTCATAAAATAATTTAATTCCATGTT
CTAACAGAAATTGGAAAATCCACGTAATTATGAAATCATACAAAATGGTT
CTTGAGAGGGCAAATGTTACGCAAACACAGCAAGTTTAAACAACAGAGAA
TCAAATTGATGGGACAGCCTCTCAAAGGAACTTCATGATCTTGGATAACC
CTCTGAGAAGGTGGAACAATTGCGTCCAAGCATCTCTCCAGAAAGAAAAA
CATCGGAATCAATTGTAGACCATATATTTAGGCGTTGCACTGAACTTTTG
ATATCCCTTGATGACTTTGTTCACTGCATCGAGGAAGTCTTTCTCTGTCA
CTGTTTTTCTTCGTGCCCGGATGGCAAACATCCCAGCTTCTGTGCATACA
CTCCTTATATCAGCTCCGGTGGAATTGGGGCAAAGCCTAGCCAAGAGCTC
AAAGCGGATATCTCTTTCACAGTTCATTGTTCGCGTGTGGATCTTAAATA
TCTGTGTCCGGCTCTCCAAATCAGGAAGGCCAAACTCAACCTTACGATCT
AATCGTCCGGGACGCAACAGGGCCGGATCAAGTGTGTCAGGCCTGTTTGT
TGCCATTAGAACTTTGATATTTCCACGAGCATCAAACCCATCAAGCTGAT
TCACAATTTCAAGCATTGTGCGTTGAACCTCGTTGTCCCCGCCAACACCA
TCATCAAAACGTGCACCTCCTATAGCATCAACTTCATCAAAGAAGACAAT
ACAAGCCTTCTTTGAACGTGCCATCTGAAATAGTTCGCGAACCATACGAG
CTCCCTCACCAACATATTTCTGTACAAGCTCACTCCCAATC
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