CB291036

Overview
NameCB291036
Unique NameCB291036
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length841
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB291036 vs. ExPASy Swiss-Prot
Match: PSMR_UNCMA (Proteasome-activating nucleotidase OS=Uncultured methanogenic archaeon RC-I GN=pan PE=3 SV=1)

HSP 1 Score: 201.445 bits (511), Expect = 5.058e-51
Identity = 97/177 (54.80%), Postives = 126/177 (71.19%), Query Frame = -2
Query:  310 IGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLARLCPNSTGADIRSVCTEAGMFAIRARRKTVTEKDFLDAVNKVI 840
            IGSELVQKY+GEGARMVRELF++A+ K   I+F DE+D+IG  R D    GD EVQRT+++++ ++DGFD RGN+++L ATNRPD LDPALLRPGR DR ++  +P  E+R QI KIH R MN   D+    +A +   S+GAD+ ++  EAGMFAIR  R  V   DF  AV KV+
Sbjct:  225 IGSELVQKYIGEGARMVRELFELAKEKSPSIIFIDEIDSIGAKRLDSITSGDREVQRTLVQLLAEMDGFDPRGNVRILAATNRPDILDPALLRPGRFDRMIKVPMPTAEAREQILKIHARKMNLADDVDLRKIALITDESSGADLSAIVMEAGMFAIRNNRDVVDSSDFNAAVAKVM 401          
BLAST of CB291036 vs. ExPASy Swiss-Prot
Match: PRS4_YEAST (26S protease regulatory subunit 4 homolog OS=Saccharomyces cerevisiae GN=RPT2 PE=1 SV=3)

HSP 1 Score: 201.06 bits (510), Expect = 6.605e-51
Identity = 94/178 (52.81%), Postives = 131/178 (73.60%), Query Frame = -2
Query:  307 IGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLARLCPNSTGADIRSVCTEAGMFAIRARRKTVTEKDFLDAVNKVIK 840
            +GSEL+QKY+G+G R+ R++F++A      IVF DE+DAIG  R+D   GG+ E+QRTMLE++NQLDGFD RG++KV+MATN+ +TLDPAL+RPGR+DRK+ F  PDL ++ +I  IHT  MN   D+  E L     + +GADI+++CTEAG+ A+R RR  VT +DF  A  +V+K
Sbjct:  248 VGSELIQKYLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRGDVKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLSEDVNLETLVTTKDDLSGADIQAMCTEAGLLALRERRMQVTAEDFKQAKERVMK 425          
BLAST of CB291036 vs. ExPASy Swiss-Prot
Match: PSMR_METTH (Proteasome-activating nucleotidase OS=Methanobacterium thermoautotrophicum GN=pan PE=3 SV=1)

HSP 1 Score: 200.29 bits (508), Expect = 1.127e-50
Identity = 91/177 (51.41%), Postives = 130/177 (73.45%), Query Frame = -2
Query:  310 IGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLARLCPNSTGADIRSVCTEAGMFAIRARRKTVTEKDFLDAVNKVI 840
            + SE V+KY+GEGAR+VR +F++A+ K   I+F DE+DA+   R      GD EVQRT+++++ +LDGF++RGN+ ++ ATNRPD LDPALLRPGR DR +E  LP+ + R +I KIHT  M    ++  ELLAR+   ++GAD++++CTEAGMFAIR  R  VT  DF+DAV+K++
Sbjct:  217 VASEFVRKYIGEGARLVRGVFELAKEKSPSIIFIDEIDAVAAKRLKSSTSGDREVQRTLMQLLAELDGFESRGNVGIVAATNRPDILDPALLRPGRFDRFIEVPLPNEDGRREILKIHTSGMALAEEVDIELLARITDGASGADLKAICTEAGMFAIRDERDEVTMADFMDAVDKIM 393          
BLAST of CB291036 vs. ExPASy Swiss-Prot
Match: PSMR_METMP (Proteasome-activating nucleotidase OS=Methanococcus maripaludis GN=pan PE=3 SV=1)

HSP 1 Score: 200.29 bits (508), Expect = 1.127e-50
Identity = 89/184 (48.37%), Postives = 136/184 (73.91%), Query Frame = -2
Query:  289 IGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLARLCPNSTGADIRSVCTEAGMFAIRARRKTVTEKDFLDAVNKVIKGYQKFS 840
            +GSELV+K++GEGA++VR++F++A+ K  CI+F DE+DA+   R +   GGD EVQRT+++++ ++DGFD+RG++K++ ATNRPD LDPA+LRPGR DR +E  +PD + R +I KIHT  MN  + +    +A++  N  GAD+++VCTEAGMFAIR  R+ +   DF +A++K+    +K S
Sbjct:  214 VGSELVKKFIGEGAKLVRDVFKLAKEKSPCIIFIDEIDAVASKRTESLTGGDREVQRTLMQLLAEMDGFDSRGDVKIIAATNRPDILDPAILRPGRFDRIIEISMPDEDGRLEILKIHTEKMNL-KGVDLREVAKIAENMVGADLKAVCTEAGMFAIREEREFIKMDDFREAISKITGKKEKCS 396          
BLAST of CB291036 vs. ExPASy Swiss-Prot
Match: PSMR_METM6 (Proteasome-activating nucleotidase OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=pan PE=3 SV=1)

HSP 1 Score: 200.29 bits (508), Expect = 1.127e-50
Identity = 90/184 (48.91%), Postives = 135/184 (73.37%), Query Frame = -2
Query:  289 IGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLARLCPNSTGADIRSVCTEAGMFAIRARRKTVTEKDFLDAVNKVIKGYQKFS 840
            +GSELV+K++GEGA++VR++F++A+ K  CI+F DE+DA+   R +   GGD EVQRT+++++ ++DGFD+RG++K++ ATNRPD LDPA+LRPGR DR +E  +PD + R  I KIHT  MN  + +    +A+L  N  GAD+++VCTEAGMFAIR  R+ +   DF +A++K+    +K S
Sbjct:  214 VGSELVKKFIGEGAKLVRDVFKLAKEKSPCIIFIDEIDAVASKRTESLTGGDREVQRTLMQLLAEMDGFDSRGDVKIIAATNRPDILDPAILRPGRFDRIIEISMPDEDGRLDILKIHTEKMNL-KGVDLREVAKLAENMVGADLKAVCTEAGMFAIREEREFIKMDDFKEAISKITGKKEKCS 396          
BLAST of CB291036 vs. ExPASy Swiss-Prot
Match: PSMR_METMJ (Proteasome-activating nucleotidase OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=pan PE=3 SV=1)

HSP 1 Score: 199.519 bits (506), Expect = 1.922e-50
Identity = 93/182 (51.10%), Postives = 128/182 (70.33%), Query Frame = -2
Query:  295 IGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLARLCPNSTGADIRSVCTEAGMFAIRARRKTVTEKDFLDAVNKVIKGYQK 840
            +GSELVQKY+GEGAR+VRELF +A+ +   I+F DE+DAIG  R D    GD EVQRT+++++ ++DGFD RG++K++ ATNR D LD ALLRPGR DR +E  LPD + R  I KIHT+ MN   D+    ++RL     GAD+R++C EAGMFAIR  R  V  +DF+ A++K+   + +
Sbjct:  219 VGSELVQKYIGEGARLVRELFDLAKQRAPSIIFIDEIDAIGAHRNDSTTSGDREVQRTLMQLLAEMDGFDNRGDVKIVAATNRIDILDRALLRPGRFDRMIEIPLPDHQGRLAILKIHTQYMNIGEDVNLSEVSRLTEGKNGADLRAICMEAGMFAIRMERDAVNSEDFMKAIDKLALDFDR 400          
BLAST of CB291036 vs. ExPASy Swiss-Prot
Match: PSMR_METM5 (Proteasome-activating nucleotidase OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=pan PE=3 SV=1)

HSP 1 Score: 199.134 bits (505), Expect = 2.510e-50
Identity = 89/184 (48.37%), Postives = 134/184 (72.83%), Query Frame = -2
Query:  289 IGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLARLCPNSTGADIRSVCTEAGMFAIRARRKTVTEKDFLDAVNKVIKGYQKFS 840
            +GSELV+K++GEGA++VR++F++A+ K  CI+F DE+DA+   R +   GGD EVQRT+++++ ++DGFD+RG++K++ ATNRPD LDPA+LRPGR DR +E  +PD + R  I KIHT  MN  + +    +A++  N  GAD+++VCTEAGMFAIR  R+ +   DF +A+ K+    +K S
Sbjct:  214 VGSELVKKFIGEGAKLVRDVFKLAKEKSPCIIFIDEIDAVASKRTESLTGGDREVQRTLMQLLAEMDGFDSRGDVKIIAATNRPDILDPAILRPGRFDRIIEISMPDEDGRLDILKIHTEKMNL-KGVDLREVAKIAENMVGADLKAVCTEAGMFAIREEREFIKMDDFREAITKITGKKEKCS 396          
BLAST of CB291036 vs. ExPASy Swiss-Prot
Match: PSMR_METB6 (Proteasome-activating nucleotidase OS=Methanoregula boonei (strain 6A8) GN=pan PE=3 SV=1)

HSP 1 Score: 199.134 bits (505), Expect = 2.510e-50
Identity = 92/176 (52.27%), Postives = 125/176 (71.02%), Query Frame = -2
Query:  313 IGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLARLCPNSTGADIRSVCTEAGMFAIRARRKTVTEKDFLDAVNKV 840
            +GSELVQKY+GEGAR+VRELF +A+ K   I+F DE+DA+G +R +    GD EVQRT+++++  +DGF+ RG++K++ ATNR D LD ALLRPGR DR +E  LPD E R  I K+HTRT+  E  +    +A L     GAD+R++C EAGM+AIR  R  +T +DFL A+ KV
Sbjct:  244 VGSELVQKYIGEGARLVRELFDLAKKKAPTIIFIDEIDAVGASRTEANTSGDREVQRTLMQLLAGMDGFETRGDVKIIGATNRIDILDKALLRPGRFDRIIEIPLPDEEGRLSILKVHTRTLTMEETVNLPEIAGLTEGKNGADLRAICMEAGMYAIRNERPAITREDFLSAIEKV 419          
BLAST of CB291036 vs. ExPASy Swiss-Prot
Match: PSMR_METJA (Proteasome-activating nucleotidase OS=Methanocaldococcus jannaschii GN=pan PE=1 SV=1)

HSP 1 Score: 196.052 bits (497), Expect = 2.125e-49
Identity = 90/178 (50.56%), Postives = 130/178 (73.03%), Query Frame = -2
Query:  307 IGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLARLCPNSTGADIRSVCTEAGMFAIRARRKTVTEKDFLDAVNKVIK 840
            +GSELV+K++GEGA +V+++F++A+ K   I+F DE+DAI   R D   GGD EVQRT+++++ ++DGFDARG++K++ ATNRPD LDPA+LRPGR DR +E   PD + R +I KIHTR MN   D+  E +A++     GA+++++CTEAGM AIR  R  VT  DF  AV K+++
Sbjct:  236 VGSELVKKFIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARGDVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAEDVNLEEIAKMTEGCVGAELKAICTEAGMNAIRELRDYVTMDDFRKAVEKIME 413          
BLAST of CB291036 vs. ExPASy Swiss-Prot
Match: PSMR_METHJ (Proteasome-activating nucleotidase OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=pan PE=3 SV=1)

HSP 1 Score: 196.052 bits (497), Expect = 2.125e-49
Identity = 94/175 (53.71%), Postives = 124/175 (70.86%), Query Frame = -2
Query:  316 IGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLARLCPNSTGADIRSVCTEAGMFAIRARRKTVTEKDFLDAVNK 840
            +GSELVQKY+GEGAR+VRELF +A+ K   IVF DE+DAIG +R +    GD EVQRT+++++  +DGF+ RG++K++ ATNR D LD ALLRPGR DR +E  LPD E R  I K+HTR MN   D+    +ARL     GA++ ++C EAGMFAIR     V ++DFL A+NK
Sbjct:  219 VGSELVQKYIGEGARLVRELFDLAKEKAPSIVFIDEIDAIGASRTEAMTSGDREVQRTLMQLLAAMDGFEPRGDVKIIGATNRIDILDAALLRPGRFDRIIEIPLPDTEGRYSILKVHTRCMNLSEDVDLMEVARLTEGRNGAELNAICMEAGMFAIRKEHPQVDQEDFLTALNK 393          
The following BLAST results are available for this feature:
BLAST of CB291036 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 370
Match NameE-valueIdentityDescription
PSMR_UNCMA5.058e-5154.80Proteasome-activating nucleotidase OS=Uncultured m... [more]
PRS4_YEAST6.605e-5152.8126S protease regulatory subunit 4 homolog OS=Sacch... [more]
PSMR_METTH1.127e-5051.41Proteasome-activating nucleotidase OS=Methanobacte... [more]
PSMR_METMP1.127e-5048.37Proteasome-activating nucleotidase OS=Methanococcu... [more]
PSMR_METM61.127e-5048.91Proteasome-activating nucleotidase OS=Methanococcu... [more]
PSMR_METMJ1.922e-5051.10Proteasome-activating nucleotidase OS=Methanoculle... [more]
PSMR_METM52.510e-5048.37Proteasome-activating nucleotidase OS=Methanococcu... [more]
PSMR_METB62.510e-5052.27Proteasome-activating nucleotidase OS=Methanoregul... [more]
PSMR_METJA2.125e-4950.56Proteasome-activating nucleotidase OS=Methanocaldo... [more]
PSMR_METHJ2.125e-4953.71Proteasome-activating nucleotidase OS=Methanospiri... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_02ba10_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_02ba10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB291036 ID=CB291036; Name=CB291036; organism=Citrus sinensis; type=EST; length=841bp
TTTTTTTTTTTTTAGAAAGAAATATTCATAAAATAATTTAATTCCATGTT
CTAACAGAAATTGGAAAATCCACGTAATTATGAAATCATACAAAATGGTT
CTTGAGAGGGCAAATGTTACGCAAACACAGCAAGTTTAAACAACAGAGAA
TCAAATTGATGGGACAGCCTCTCAAAGGAACTTCATGATCTTGGATAACC
CTCTGAGAAGGTGGAACAATTGCGTCCAAGCATCTCTCCAGAAAGAAAAA
CATCGGAATCAATTGTAGACCATATATTTAGGCGTTGCACTGAACTTTTG
ATATCCCTTGATGACTTTGTTCACTGCATCGAGGAAGTCTTTCTCTGTCA
CTGTTTTTCTTCGTGCCCGGATGGCAAACATCCCAGCTTCTGTGCATACA
CTCCTTATATCAGCTCCGGTGGAATTGGGGCAAAGCCTAGCCAAGAGCTC
AAAGCGGATATCTCTTTCACAGTTCATTGTTCGCGTGTGGATCTTAAATA
TCTGTGTCCGGCTCTCCAAATCAGGAAGGCCAAACTCAACCTTACGATCT
AATCGTCCGGGACGCAACAGGGCCGGATCAAGTGTGTCAGGCCTGTTTGT
TGCCATTAGAACTTTGATATTTCCACGAGCATCAAACCCATCAAGCTGAT
TCACAATTTCAAGCATTGTGCGTTGAACCTCGTTGTCCCCGCCAACACCA
TCATCAAAACGTGCACCTCCTATAGCATCAACTTCATCAAAGAAGACAAT
ACAAGCCTTCTTTGAACGTGCCATCTGAAATAGTTCGCGAACCATACGAG
CTCCCTCACCAACATATTTCTGTACAAGCTCACTCCCAATC
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