CB291037

Overview
NameCB291037
Unique NameCB291037
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length765
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB291037 vs. ExPASy Swiss-Prot
Match: PRS8_BOVIN (26S protease regulatory subunit 8 OS=Bos taurus GN=PSMC5 PE=2 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 8.856e-44
Identity = 88/155 (56.77%), Postives = 115/155 (74.19%), Query Frame = -1
Query:  301 ARSKKACIVFYDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLARLCPNSTGADIRSVCTEAGMFAIRA*RKTVTEKDFLDAVNKVIK 765
            AR     I+F DE+D+IG +R + G GGD+EVQRTMLE++NQLDGF+A  NIKV+MATNR D LD ALLRPGR+DRK+EF  P+ E+R  I KIH+R MN  R I    +A L P ++GA+++ VCTEAGM+A+R  R  VT++DF  AV KV++
Sbjct:  238 AREHAPSIIFMDEIDSIGSSRLEGGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDSALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQ 392          
BLAST of CB291037 vs. ExPASy Swiss-Prot
Match: PRS10_BOVIN (26S protease regulatory subunit S10B OS=Bos taurus GN=PSMC6 PE=2 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 4.395e-43
Identity = 82/153 (53.59%), Postives = 109/153 (71.24%), Query Frame = -1
Query:  307 ARSKKACIVFYDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLARLCPNSTGADIRSVCTEAGMFAIRA*RKTVTEKDFLDAVNKV 765
            AR  + CI+F DE+DAIGG RF +G   D E+QRT++E++NQ+DGFD    +K++MATNRPDTLDPALLRPGRLDRK+   LP+ ++R  I KIH   +    +I +E + +L     GAD+ +VCTEAGMFAIRA    V ++DF+ AV KV
Sbjct:  222 ARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDTLHRVKMIMATNRPDTLDPALLRPGRLDRKIHIDLPNEQARLDILKIHAGPITKHGEIDYEAIVKLSDGFNGADLGNVCTEAGMFAIRADHDFVVQEDFMKAVRKV 374          
BLAST of CB291037 vs. ExPASy Swiss-Prot
Match: PSMR_PYRFU (Proteasome-activating nucleotidase OS=Pyrococcus furiosus GN=pan PE=3 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 7.497e-43
Identity = 83/159 (52.20%), Postives = 114/159 (71.70%), Query Frame = -1
Query:  289 ARSKKACIVFYDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLARLCPNSTGADIRSVCTEAGMFAIRA*RKTVTEKDFLDAVNKVIKGYQK 765
            A+ K   I+F DE+DAIG  R D+  GG+ EV RT+++++ ++DGFD RGN+KV+ ATNRPD LDPALLRPGR DR +E  LPD E R +I K+HTR M   R +   L+A L   ++GAD++++ TEAGMFAIR  R  VT++DFL A++KV+   +K
Sbjct:  226 AKEKAPTIIFIDEIDAIGAKRLDETTGGEREVNRTLMQLLAEMDGFDPRGNVKVIAATNRPDILDPALLRPGRFDRLIEVPLPDFEGRLEILKVHTRRMKL-RGVDLRLIAELTEGASGADLKAIATEAGMFAIRERRTYVTQEDFLKAIDKVLGNEKK 383          
BLAST of CB291037 vs. ExPASy Swiss-Prot
Match: PRS4_DICDI (26S protease regulatory subunit 4 homolog OS=Dictyostelium discoideum GN=psmC1 PE=1 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 7.497e-43
Identity = 83/158 (52.53%), Postives = 116/158 (73.42%), Query Frame = -1
Query:  271 IVFYDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLARLCPNSTGADIRSVCTEAGMFAIRA*RKTVTEKDFLDAVNKVIKGYQKFSATPK 744
            IVF DE+DA+G  R+D   GG+ E+QRTMLE++NQLDGFDAR ++KV+MATNR +TLDPAL+RPGR+DRK+EF LPD++++ +IF+IHT  MN   D+  E       + +GADI+++CTE+G+ A+R  R  VT  DF  A  KV+  Y+K +  P+
Sbjct:  280 IVFIDEIDAVGTKRYDSQSGGEREIQRTMLELLNQLDGFDARTDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDIKTKRKIFEIHTAKMNLSEDVNLEEFVMSKDDLSGADIKAICTESGLLALRERRMRVTHTDFKKAKEKVL--YRKTAGAPE 435          
BLAST of CB291037 vs. ExPASy Swiss-Prot
Match: PRS8_XENLA (26S protease regulatory subunit 8 OS=Xenopus laevis GN=psmc5 PE=2 SV=2)

HSP 1 Score: 172.555 bits (436), Expect = 2.181e-42
Identity = 88/155 (56.77%), Postives = 115/155 (74.19%), Query Frame = -1
Query:  301 ARSKKACIVFYDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLARLCPNSTGADIRSVCTEAGMFAIRA*RKTVTEKDFLDAVNKVIK 765
            AR     I+F DE+D+IG +R + G GGD+EVQRTMLE++NQLDGF+A  NIKV+MATNR D LD ALLRPGR+DRK+EF  P+ E+R  I KIH+R MN  R I    +A L P ++GA+++ VCTEAGM+A+R  R  VT++DF  AV KV++
Sbjct:  233 AREHAPSIIFMDEIDSIG-SRLEGGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDSALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQ 386          
BLAST of CB291037 vs. ExPASy Swiss-Prot
Match: PSMR_THEGJ (Proteasome-activating nucleotidase OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=pan PE=3 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 2.849e-42
Identity = 81/154 (52.60%), Postives = 113/154 (73.38%), Query Frame = -1
Query:  304 ARSKKACIVFYDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLARLCPNSTGADIRSVCTEAGMFAIRA*RKTVTEKDFLDAVNKVI 765
            A+ K   I+F DE+DAIG  R D+  GG+ EV RT+++++ ++DGFD RGN+KV+ ATNRPD LDPALLRPGR DR +E  LPD   R +I K+HTR MN  R++   ++A +   ++GAD++++ TEAGMFAIR  R  VT++DFL AV+KV+
Sbjct:  227 AKEKAPTIIFIDEIDAIGAKRMDETTGGEREVNRTLMQLLAEMDGFDPRGNVKVIAATNRPDILDPALLRPGRFDRLIEVPLPDFRGRLEILKVHTRKMNL-RNVDLSIIADITEGASGADLKAIATEAGMFAIRDRRTYVTQEDFLKAVDKVL 379          
BLAST of CB291037 vs. ExPASy Swiss-Prot
Match: PSMR_PYRAB (Proteasome-activating nucleotidase OS=Pyrococcus abyssi GN=pan PE=3 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 2.849e-42
Identity = 81/159 (50.94%), Postives = 115/159 (72.33%), Query Frame = -1
Query:  289 ARSKKACIVFYDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLARLCPNSTGADIRSVCTEAGMFAIRA*RKTVTEKDFLDAVNKVIKGYQK 765
            A+ K   I+F DE+DAIG  R D+  GG+ EV RT+++++ ++DGFD RGN+KV+ ATNRPD LDPALLRPGR DR +E  LPD E R +I K+HTR M   +++   ++A +   ++GAD++++ TEAGMFAIR  R  VT++DFL AV+KV+   +K
Sbjct:  229 AKEKAPTIIFIDEIDAIGAKRMDETTGGEREVNRTLMQLLAEMDGFDPRGNVKVIAATNRPDILDPALLRPGRFDRLIEVPLPDFEGRLEILKVHTRRMKL-KNVDLRVIAEITEGASGADLKAIATEAGMFAIRERRTYVTQEDFLKAVDKVLGNERK 386          
BLAST of CB291037 vs. ExPASy Swiss-Prot
Match: PSMR_ARCFU (Proteasome-activating nucleotidase OS=Archaeoglobus fulgidus GN=pan PE=1 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 2.849e-42
Identity = 85/155 (54.84%), Postives = 109/155 (70.32%), Query Frame = -1
Query:  301 ARSKKACIVFYDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLARLCPNSTGADIRSVCTEAGMFAIRA*RKTVTEKDFLDAVNKVIK 765
            A+ K   I+F DE+DAI   R +    GD EVQRTM++++ +LDGFD RG++KV+ ATNR D LDPA+LRPGR DR +E  LP  E R QIFKIHTR M    D+ F+ LAR+   ++GADI+++CTEAGMFAIR  R  VT  DF  A+ KV+K
Sbjct:  230 AKEKAPSIIFIDELDAIAARRTNSDTSGDREVQRTMMQLLAELDGFDPRGDVKVIGATNRIDILDPAILRPGRFDRIIEVPLPTFEGRIQIFKIHTRKMKLAEDVDFKELARITEGASGADIKAICTEAGMFAIREERAKVTMLDFTKAIEKVLK 384          
BLAST of CB291037 vs. ExPASy Swiss-Prot
Match: PRS4_RAT (26S protease regulatory subunit 4 OS=Rattus norvegicus GN=Psmc1 PE=2 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 4.860e-42
Identity = 83/158 (52.53%), Postives = 116/158 (73.42%), Query Frame = -1
Query:  271 IVFYDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLARLCPNSTGADIRSVCTEAGMFAIRA*RKTVTEKDFLDAVNKVIKGYQKFSATPK 744
            IVF DE+DAIG  R+D   GG+ E+QRTMLE++NQLDGFD+RG++KV+MATNR +TLDPAL+RPGR+DRK+EF LPD +++ +IF+IHT  M    D+  + L     + +GADI+++CTEAG+ A+R  R  VT +DF  +   V+  Y+K   TP+
Sbjct:  281 IVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKKRIFQIHTSRMTLADDVTLDDLIMAKDDLSGADIKAICTEAGLMALRERRMKVTNEDFKKSKENVL--YKKQEGTPE 436          
BLAST of CB291037 vs. ExPASy Swiss-Prot
Match: PRS4_MOUSE (26S protease regulatory subunit 4 OS=Mus musculus GN=Psmc1 PE=1 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 4.860e-42
Identity = 83/158 (52.53%), Postives = 116/158 (73.42%), Query Frame = -1
Query:  271 IVFYDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLARLCPNSTGADIRSVCTEAGMFAIRA*RKTVTEKDFLDAVNKVIKGYQKFSATPK 744
            IVF DE+DAIG  R+D   GG+ E+QRTMLE++NQLDGFD+RG++KV+MATNR +TLDPAL+RPGR+DRK+EF LPD +++ +IF+IHT  M    D+  + L     + +GADI+++CTEAG+ A+R  R  VT +DF  +   V+  Y+K   TP+
Sbjct:  281 IVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKKRIFQIHTSRMTLADDVTLDDLIMAKDDLSGADIKAICTEAGLMALRERRMKVTNEDFKKSKENVL--YKKQEGTPE 436          
The following BLAST results are available for this feature:
BLAST of CB291037 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 297
Match NameE-valueIdentityDescription
PRS8_BOVIN8.856e-4456.7726S protease regulatory subunit 8 OS=Bos taurus GN... [more]
PRS10_BOVIN4.395e-4353.5926S protease regulatory subunit S10B OS=Bos taurus... [more]
PSMR_PYRFU7.497e-4352.20Proteasome-activating nucleotidase OS=Pyrococcus f... [more]
PRS4_DICDI7.497e-4352.5326S protease regulatory subunit 4 homolog OS=Dicty... [more]
PRS8_XENLA2.181e-4256.7726S protease regulatory subunit 8 OS=Xenopus laevi... [more]
PSMR_THEGJ2.849e-4252.60Proteasome-activating nucleotidase OS=Thermococcus... [more]
PSMR_PYRAB2.849e-4250.94Proteasome-activating nucleotidase OS=Pyrococcus a... [more]
PSMR_ARCFU2.849e-4254.84Proteasome-activating nucleotidase OS=Archaeoglobu... [more]
PRS4_RAT4.860e-4252.5326S protease regulatory subunit 4 OS=Rattus norveg... [more]
PRS4_MOUSE4.860e-4252.5326S protease regulatory subunit 4 OS=Mus musculus ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_02ba10_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_02ba10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB291037 ID=CB291037; Name=CB291037; organism=Citrus sinensis; type=EST; length=765bp
TTTTTTTAGAAAGAAATATTCATAAAATAATTTAATCGTTTGTTCTAACA
GAAATTGGAAAATCCACGTAATTATGACATCATACAAAATGGTTCTTGAG
AGGGCAAATGTTACGCAAACACAGCAAGTTTAAACAACAGAGAATCAAAT
TGATGGGACAGCCTCTCAAAGGAACTTCATGATCTTGGATAACCCTCTGA
GAAGGTGGAACAATTGCGTCCAAGCATCTCTCCAAAAAGAAAAACATCGG
AATCAATTGTAGACCATATATTTAGGCGTTGCACTGAACTTTTGATATCC
CTTGATGACTTTGTTCACTGCATCGAGGAAGTCTTTCTCTGTCACTGTTT
TTCTTCATGCCCGGATGGCAAACATCCCAGCTTCTGTGCATACACTCCTT
ATATCAGCTCCGGTGGAATTGGGGCAAAGCCTAGCCAATAGCTCAAAGCG
GATATCTCTTTCACAGTTCATTGTTCGCGTGTGGATCTTAAATATCTGTG
TCCGGCTCTCCAAATCAGGAAGGCCAAACTCAACCTTACGATCTAATCGT
CCGGGACGCAACAGGGCCGGATCAAGTGTGTCAGGCCTGTTTGTTGCCAT
TAGAACTTTGATATTTCCACGAGCATCAAACCCATCAAGCTGATTCACAA
TTTCAAGCATTGTGCGTTGAACCTCGTTGTCCCCGCCAACACCATCATCA
AAACGTGCACCTCCTATAGCATCAACTTCATCATAGAAGACAATACAAGC
CTTCTTTGAACGTGC
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