CB291037

Overview
NameCB291037
Unique NameCB291037
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length765
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB291037 vs. ExPASy Swiss-Prot
Match: PRS4_YEAST (26S protease regulatory subunit 4 homolog OS=Saccharomyces cerevisiae GN=RPT2 PE=1 SV=3)

HSP 1 Score: 167.162 bits (422), Expect = 9.165e-41
Identity = 80/148 (54.05%), Postives = 108/148 (72.97%), Query Frame = -1
Query:  301 IVFYDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLARLCPNSTGADIRSVCTEAGMFAIRA*RKTVTEKDFLDAVNKVIK 744
            IVF DE+DAIG  R+D   GG+ E+QRTMLE++NQLDGFD RG++KV+MATN+ +TLDPAL+RPGR+DRK+ F  PDL ++ +I  IHT  MN   D+  E L     + +GADI+++CTEAG+ A+R  R  VT +DF  A  +V+K
Sbjct:  278 IVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRGDVKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLSEDVNLETLVTTKDDLSGADIQAMCTEAGLLALRERRMQVTAEDFKQAKERVMK 425          
BLAST of CB291037 vs. ExPASy Swiss-Prot
Match: PRS6A_SOLLC (26S protease regulatory subunit 6A homolog OS=Solanum lycopersicum GN=TBP1 PE=2 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 1.197e-40
Identity = 83/153 (54.25%), Postives = 106/153 (69.28%), Query Frame = -1
Query:  307 ARSKKACIVFYDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLARLCPNSTGADIRSVCTEAGMFAIRA*RKTVTEKDFLDAVNKV 765
            A+ K  CI+F DE+DAIG  RFD  V GD EVQRTMLE++NQLDGF +   IKV+ ATNR D LDPAL+R GRLDRK+EF  P  E+R +I +IH+R MN   D+ FE LAR   +  GA +++VC EAGM A+R     VT +DF + + +V
Sbjct:  259 AKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIEFPHPTEEARARILQIHSRKMNVNPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVTHEDFNEGIIQV 411          
BLAST of CB291037 vs. ExPASy Swiss-Prot
Match: PRS6A_ORYSJ (26S protease regulatory subunit 6A homolog OS=Oryza sativa subsp. japonica GN=TBP1 PE=2 SV=2)

HSP 1 Score: 166.777 bits (421), Expect = 1.197e-40
Identity = 83/153 (54.25%), Postives = 106/153 (69.28%), Query Frame = -1
Query:  307 ARSKKACIVFYDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLARLCPNSTGADIRSVCTEAGMFAIRA*RKTVTEKDFLDAVNKV 765
            A+ K  CI+F DE+DAIG  RFD  V GD EVQRTMLE++NQLDGF +   IKV+ ATNR D LDPAL+R GRLDRK+EF  P  E+R +I +IH+R MN   D+ FE LAR   +  GA +++VC EAGM A+R     VT +DF + + +V
Sbjct:  265 AKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDERIKVIAATNRADILDPALMRSGRLDRKIEFPHPSEEARARILQIHSRKMNVNPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVTHEDFNEGIIQV 417          
BLAST of CB291037 vs. ExPASy Swiss-Prot
Match: PRS4_CAEEL (Probable 26S protease regulatory subunit 4 OS=Caenorhabditis elegans GN=rpt-2 PE=2 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 1.197e-40
Identity = 81/165 (49.09%), Postives = 115/165 (69.70%), Query Frame = -1
Query:  271 ARSKKACIVFYDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLARLCPNSTGADIRSVCTEAGMFAIRA*RKTVTEKDFLDAVNKVIKGYQKFSATPK 765
            A      IVF DE+DA+G  R+D   GG+ E+QRTMLE++NQLDGFD+RG++KVLMATNR ++LDPAL+RPGR+DRK+EF LPD +++ +IF+IHT  M   +++  E         +GADI+++CTEAG+ A+R  R  VT +DF  +   V+  Y+K    P+
Sbjct:  277 AEENAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVLMATNRIESLDPALIRPGRIDRKIEFPLPDEKTKRRIFQIHTSRMTLGKEVNLEEFITAKDELSGADIKAMCTEAGLLALRERRMRVTMEDFQKSKENVL--YRKKEGAPE 439          
BLAST of CB291037 vs. ExPASy Swiss-Prot
Match: PSMR_METMP (Proteasome-activating nucleotidase OS=Methanococcus maripaludis GN=pan PE=3 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 2.042e-40
Identity = 76/161 (47.20%), Postives = 113/161 (70.19%), Query Frame = -1
Query:  283 ARSKKACIVFYDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLARLCPNSTGADIRSVCTEAGMFAIRA*RKTVTEKDFLDAVNKVIKGYQKFS 765
            A+ K  CI+F DE+DA+   R +   GGD EVQRT+++++ ++DGFD+RG++K++ ATNRPD LDPA+LRPGR DR +E  +PD + R +I KIHT  MN  + +    +A++  N  GAD+++VCTEAGMFAIR  R+ +   DF +A++K+    +K S
Sbjct:  237 AKEKSPCIIFIDEIDAVASKRTESLTGGDREVQRTLMQLLAEMDGFDSRGDVKIIAATNRPDILDPAILRPGRFDRIIEISMPDEDGRLEILKIHTEKMNL-KGVDLREVAKIAENMVGADLKAVCTEAGMFAIREEREFIKMDDFREAISKITGKKEKCS 396          
BLAST of CB291037 vs. ExPASy Swiss-Prot
Match: PSMR_METM6 (Proteasome-activating nucleotidase OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=pan PE=3 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 2.042e-40
Identity = 77/161 (47.83%), Postives = 112/161 (69.57%), Query Frame = -1
Query:  283 ARSKKACIVFYDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLARLCPNSTGADIRSVCTEAGMFAIRA*RKTVTEKDFLDAVNKVIKGYQKFS 765
            A+ K  CI+F DE+DA+   R +   GGD EVQRT+++++ ++DGFD+RG++K++ ATNRPD LDPA+LRPGR DR +E  +PD + R  I KIHT  MN  + +    +A+L  N  GAD+++VCTEAGMFAIR  R+ +   DF +A++K+    +K S
Sbjct:  237 AKEKSPCIIFIDEIDAVASKRTESLTGGDREVQRTLMQLLAEMDGFDSRGDVKIIAATNRPDILDPAILRPGRFDRIIEISMPDEDGRLDILKIHTEKMNL-KGVDLREVAKLAENMVGADLKAVCTEAGMFAIREEREFIKMDDFKEAISKITGKKEKCS 396          
BLAST of CB291037 vs. ExPASy Swiss-Prot
Match: PSMR_METM5 (Proteasome-activating nucleotidase OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=pan PE=3 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 4.548e-40
Identity = 76/161 (47.20%), Postives = 111/161 (68.94%), Query Frame = -1
Query:  283 ARSKKACIVFYDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLARLCPNSTGADIRSVCTEAGMFAIRA*RKTVTEKDFLDAVNKVIKGYQKFS 765
            A+ K  CI+F DE+DA+   R +   GGD EVQRT+++++ ++DGFD+RG++K++ ATNRPD LDPA+LRPGR DR +E  +PD + R  I KIHT  MN  + +    +A++  N  GAD+++VCTEAGMFAIR  R+ +   DF +A+ K+    +K S
Sbjct:  237 AKEKSPCIIFIDEIDAVASKRTESLTGGDREVQRTLMQLLAEMDGFDSRGDVKIIAATNRPDILDPAILRPGRFDRIIEISMPDEDGRLDILKIHTEKMNL-KGVDLREVAKIAENMVGADLKAVCTEAGMFAIREEREFIKMDDFREAITKITGKKEKCS 396          
BLAST of CB291037 vs. ExPASy Swiss-Prot
Match: PRS8_NAEFO (26S protease regulatory subunit 8 homolog OS=Naegleria fowleri PE=2 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 4.548e-40
Identity = 85/156 (54.49%), Postives = 112/156 (71.79%), Query Frame = -1
Query:  301 ARSKKACIVFYDEVDAIGGARFDDGVGG-DNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLARLCPNSTGADIRSVCTEAGMFAIRA*RKTVTEKDFLDAVNKVIK 765
            AR     I+F DE+D+IG  R + G GG D+EVQRTMLE++NQLDGF++  NIK++MATNR D LDPALLRPGR+DRK+EF  P+  +R  I KIH+R MN  R I    +A +   ++GA+I++ CTEAGMFA+R  R  VT++D   AV KV+K
Sbjct:  245 AREHAPSIIFMDEIDSIGSTRTEGGKGGGDSEVQRTMLELLNQLDGFESTQNIKIIMATNRIDILDPALLRPGRIDRKIEFPNPNELARLDILKIHSRRMNLTRGINLRKIASMLGGASGAEIKATCTEAGMFALRERRVHVTQEDLEMAVAKVMK 400          
BLAST of CB291037 vs. ExPASy Swiss-Prot
Match: PSMR_METJA (Proteasome-activating nucleotidase OS=Methanocaldococcus jannaschii GN=pan PE=1 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 5.940e-40
Identity = 78/155 (50.32%), Postives = 108/155 (69.68%), Query Frame = -1
Query:  301 ARSKKACIVFYDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLARLCPNSTGADIRSVCTEAGMFAIRA*RKTVTEKDFLDAVNKVIK 765
            A+ K   I+F DE+DAI   R D   GGD EVQRT+++++ ++DGFDARG++K++ ATNRPD LDPA+LRPGR DR +E   PD + R +I KIHTR MN   D+  E +A++     GA+++++CTEAGM AIR  R  VT  DF  AV K+++
Sbjct:  259 AKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARGDVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAEDVNLEEIAKMTEGCVGAELKAICTEAGMNAIRELRDYVTMDDFRKAVEKIME 413          
BLAST of CB291037 vs. ExPASy Swiss-Prot
Match: PS6AB_ARATH (26S protease regulatory subunit 6A homolog B OS=Arabidopsis thaliana GN=RPT5B PE=1 SV=3)

HSP 1 Score: 164.466 bits (415), Expect = 5.940e-40
Identity = 82/153 (53.59%), Postives = 105/153 (68.63%), Query Frame = -1
Query:  307 ARSKKACIVFYDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLARLCPNSTGADIRSVCTEAGMFAIRA*RKTVTEKDFLDAVNKV 765
            A+ K  CI+F DE+DAIG  RFD  V GD EVQRTMLE++NQLDGF +   IKV+ ATNR D LDPAL+R GRLDRK+EF  P  E+R +I +IH+R MN   D+ FE LAR   +  GA +++VC EAGM A+R     V  +DF + + +V
Sbjct:  259 AKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIEFPHPTEEARGRILQIHSRKMNVNADVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQV 411          
The following BLAST results are available for this feature:
BLAST of CB291037 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 297
Match NameE-valueIdentityDescription
PRS4_YEAST9.165e-4154.0526S protease regulatory subunit 4 homolog OS=Sacch... [more]
PRS6A_SOLLC1.197e-4054.2526S protease regulatory subunit 6A homolog OS=Sola... [more]
PRS6A_ORYSJ1.197e-4054.2526S protease regulatory subunit 6A homolog OS=Oryz... [more]
PRS4_CAEEL1.197e-4049.09Probable 26S protease regulatory subunit 4 OS=Caen... [more]
PSMR_METMP2.042e-4047.20Proteasome-activating nucleotidase OS=Methanococcu... [more]
PSMR_METM62.042e-4047.83Proteasome-activating nucleotidase OS=Methanococcu... [more]
PSMR_METM54.548e-4047.20Proteasome-activating nucleotidase OS=Methanococcu... [more]
PRS8_NAEFO4.548e-4054.4926S protease regulatory subunit 8 homolog OS=Naegl... [more]
PSMR_METJA5.940e-4050.32Proteasome-activating nucleotidase OS=Methanocaldo... [more]
PS6AB_ARATH5.940e-4053.5926S protease regulatory subunit 6A homolog B OS=Ar... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_02ba10_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_02ba10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB291037 ID=CB291037; Name=CB291037; organism=Citrus sinensis; type=EST; length=765bp
TTTTTTTAGAAAGAAATATTCATAAAATAATTTAATCGTTTGTTCTAACA
GAAATTGGAAAATCCACGTAATTATGACATCATACAAAATGGTTCTTGAG
AGGGCAAATGTTACGCAAACACAGCAAGTTTAAACAACAGAGAATCAAAT
TGATGGGACAGCCTCTCAAAGGAACTTCATGATCTTGGATAACCCTCTGA
GAAGGTGGAACAATTGCGTCCAAGCATCTCTCCAAAAAGAAAAACATCGG
AATCAATTGTAGACCATATATTTAGGCGTTGCACTGAACTTTTGATATCC
CTTGATGACTTTGTTCACTGCATCGAGGAAGTCTTTCTCTGTCACTGTTT
TTCTTCATGCCCGGATGGCAAACATCCCAGCTTCTGTGCATACACTCCTT
ATATCAGCTCCGGTGGAATTGGGGCAAAGCCTAGCCAATAGCTCAAAGCG
GATATCTCTTTCACAGTTCATTGTTCGCGTGTGGATCTTAAATATCTGTG
TCCGGCTCTCCAAATCAGGAAGGCCAAACTCAACCTTACGATCTAATCGT
CCGGGACGCAACAGGGCCGGATCAAGTGTGTCAGGCCTGTTTGTTGCCAT
TAGAACTTTGATATTTCCACGAGCATCAAACCCATCAAGCTGATTCACAA
TTTCAAGCATTGTGCGTTGAACCTCGTTGTCCCCGCCAACACCATCATCA
AAACGTGCACCTCCTATAGCATCAACTTCATCATAGAAGACAATACAAGC
CTTCTTTGAACGTGC
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