CB291037

Overview
NameCB291037
Unique NameCB291037
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length765
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB291037 vs. ExPASy Swiss-Prot
Match: PSMR_METB6 (Proteasome-activating nucleotidase OS=Methanoregula boonei (strain 6A8) GN=pan PE=3 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 3.260e-38
Identity = 74/153 (48.37%), Postives = 103/153 (67.32%), Query Frame = -1
Query:  307 ARSKKACIVFYDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLARLCPNSTGADIRSVCTEAGMFAIRA*RKTVTEKDFLDAVNKV 765
            A+ K   I+F DE+DA+G +R +    GD EVQRT+++++  +DGF+ RG++K++ ATNR D LD ALLRPGR DR +E  LPD E R  I K+HTRT+  E  +    +A L     GAD+R++C EAGM+AIR  R  +T +DFL A+ KV
Sbjct:  267 AKKKAPTIIFIDEIDAVGASRTEANTSGDREVQRTLMQLLAGMDGFETRGDVKIIGATNRIDILDKALLRPGRFDRIIEIPLPDEEGRLSILKVHTRTLTMEETVNLPEIAGLTEGKNGADLRAICMEAGMYAIRNERPAITREDFLSAIEKV 419          
BLAST of CB291037 vs. ExPASy Swiss-Prot
Match: PRS6A_SCHPO (26S protease regulatory subunit 6A OS=Schizosaccharomyces pombe GN=tbp1 PE=2 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 4.257e-38
Identity = 81/153 (52.94%), Postives = 104/153 (67.97%), Query Frame = -1
Query:  307 ARSKKACIVFYDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLARLCPNSTGADIRSVCTEAGMFAIRA*RKTVTEKDFLDAVNKV 765
            A+ K   I+F DE+DAIG  RFD    GD EVQRTMLE++NQLDGF +   +KV+ ATNR DTLDPALLR GRLDRK+EF LP+ E+R  I +IH+R M  + DI +E LAR      GA ++SVC EAGM A+R     +  + F+D + +V
Sbjct:  274 AKEKSPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSDDRVKVIAATNRVDTLDPALLRSGRLDRKLEFPLPNEEARVGILRIHSRKMAIDDDINWEELARSTDEYNGAMLKSVCVEAGMIALRQGDTKINHEHFMDGILEV 426          
BLAST of CB291037 vs. ExPASy Swiss-Prot
Match: PR6AB_XENLA (26S protease regulatory subunit 6A-B OS=Xenopus laevis GN=psmc3-B PE=2 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 4.257e-38
Identity = 77/153 (50.33%), Postives = 105/153 (68.63%), Query Frame = -1
Query:  307 ARSKKACIVFYDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLARLCPNSTGADIRSVCTEAGMFAIRA*RKTVTEKDFLDAVNKV 765
            A+ K   I+F DE+DAIG  RFD    GD EVQRTMLE++NQLDGF     +KV+ ATNR D LDPALLR GRLDRK+EF +P+ E+R +I +IH+R MN   D+ +E LAR   +  GA  ++VC EAG+ A+R     +T +D+++ + +V
Sbjct:  240 AKEKAPSIIFIDELDAIGNKRFDSEKAGDREVQRTMLELLNQLDGFQPTTQVKVIAATNRVDILDPALLRSGRLDRKIEFPMPNEEARARIMQIHSRKMNVSPDVNYEELARCTDDFNGAQCKAVCVEAGIIALRRGATELTHEDYMEGILEV 392          
BLAST of CB291037 vs. ExPASy Swiss-Prot
Match: PSMR_SULIY (Proteasome-activating nucleotidase OS=Sulfolobus islandicus (strain Y.G.57.14 / Yellowstone #1) GN=pan PE=3 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 5.560e-38
Identity = 76/153 (49.67%), Postives = 104/153 (67.97%), Query Frame = -1
Query:  307 ARSKKACIVFYDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLARLCPNSTGADIRSVCTEAGMFAIRA*RKTVTEKDFLDAVNKV 765
            A+ K   I+F DE+DAIG  R D G  G+ E+QRT+++++ +LDGF+   N+K++ ATNR D LDPALLRPGR DR +E  LPD   RT+IF I+ + M  E +I  ELL++L    +GADI++VC EA   AIR  R  VT KD +DA+ K+
Sbjct:  223 AKRKAPSIIFIDEIDAIGAKRIDIGTSGEREIQRTLMQLLAELDGFNPLDNVKIIAATNRIDILDPALLRPGRFDRIIEVPLPDFRGRTEIFNIYLKKMKVEDNINLELLSQLSEGFSGADIKNVCVEAAYMAIRDGRNKVTMKDLVDAITKI 375          
BLAST of CB291037 vs. ExPASy Swiss-Prot
Match: PSMR_SULIM (Proteasome-activating nucleotidase OS=Sulfolobus islandicus (strain M.14.25 / Kamchatka #1) GN=pan PE=3 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 5.560e-38
Identity = 76/153 (49.67%), Postives = 104/153 (67.97%), Query Frame = -1
Query:  307 ARSKKACIVFYDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLARLCPNSTGADIRSVCTEAGMFAIRA*RKTVTEKDFLDAVNKV 765
            A+ K   I+F DE+DAIG  R D G  G+ E+QRT+++++ +LDGF+   N+K++ ATNR D LDPALLRPGR DR +E  LPD   RT+IF I+ + M  E +I  ELL++L    +GADI++VC EA   AIR  R  VT KD +DA+ K+
Sbjct:  223 AKRKAPSIIFIDEIDAIGAKRIDIGTSGEREIQRTLMQLLAELDGFNPLDNVKIIAATNRIDILDPALLRPGRFDRIIEVPLPDFRGRTEIFNIYLKKMKVEDNINLELLSQLSEGFSGADIKNVCVEAAYMAIRDGRNKVTMKDLVDAITKI 375          
BLAST of CB291037 vs. ExPASy Swiss-Prot
Match: PSMR_SULIL (Proteasome-activating nucleotidase OS=Sulfolobus islandicus (strain L.S.2.15 / Lassen #1) GN=pan PE=3 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 5.560e-38
Identity = 76/153 (49.67%), Postives = 104/153 (67.97%), Query Frame = -1
Query:  307 ARSKKACIVFYDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLARLCPNSTGADIRSVCTEAGMFAIRA*RKTVTEKDFLDAVNKV 765
            A+ K   I+F DE+DAIG  R D G  G+ E+QRT+++++ +LDGF+   N+K++ ATNR D LDPALLRPGR DR +E  LPD   RT+IF I+ + M  E +I  ELL++L    +GADI++VC EA   AIR  R  VT KD +DA+ K+
Sbjct:  223 AKRKAPSIIFIDEIDAIGAKRIDIGTSGEREIQRTLMQLLAELDGFNPLDNVKIIAATNRIDILDPALLRPGRFDRIIEVPLPDFRGRTEIFNIYLKKMKVEDNINLELLSQLSEGFSGADIKNVCVEAAYMAIRDGRNKVTMKDLVDAITKI 375          
BLAST of CB291037 vs. ExPASy Swiss-Prot
Match: PSMR_SULIK (Proteasome-activating nucleotidase OS=Sulfolobus islandicus (strain M.16.4 / Kamchatka #3) GN=pan PE=3 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 5.560e-38
Identity = 76/153 (49.67%), Postives = 104/153 (67.97%), Query Frame = -1
Query:  307 ARSKKACIVFYDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLARLCPNSTGADIRSVCTEAGMFAIRA*RKTVTEKDFLDAVNKV 765
            A+ K   I+F DE+DAIG  R D G  G+ E+QRT+++++ +LDGF+   N+K++ ATNR D LDPALLRPGR DR +E  LPD   RT+IF I+ + M  E +I  ELL++L    +GADI++VC EA   AIR  R  VT KD +DA+ K+
Sbjct:  223 AKRKAPSIIFIDEIDAIGAKRIDIGTSGEREIQRTLMQLLAELDGFNPLDNVKIIAATNRIDILDPALLRPGRFDRIIEVPLPDFRGRTEIFNIYLKKMKVEDNINLELLSQLSEGFSGADIKNVCVEAAYMAIRDGRNKVTMKDLVDAITKI 375          
BLAST of CB291037 vs. ExPASy Swiss-Prot
Match: PSMR_SULIA (Proteasome-activating nucleotidase OS=Sulfolobus islandicus (strain M.16.27) GN=pan PE=3 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 5.560e-38
Identity = 76/153 (49.67%), Postives = 104/153 (67.97%), Query Frame = -1
Query:  307 ARSKKACIVFYDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLARLCPNSTGADIRSVCTEAGMFAIRA*RKTVTEKDFLDAVNKV 765
            A+ K   I+F DE+DAIG  R D G  G+ E+QRT+++++ +LDGF+   N+K++ ATNR D LDPALLRPGR DR +E  LPD   RT+IF I+ + M  E +I  ELL++L    +GADI++VC EA   AIR  R  VT KD +DA+ K+
Sbjct:  223 AKRKAPSIIFIDEIDAIGAKRIDIGTSGEREIQRTLMQLLAELDGFNPLDNVKIIAATNRIDILDPALLRPGRFDRIIEVPLPDFRGRTEIFNIYLKKMKVEDNINLELLSQLSEGFSGADIKNVCVEAAYMAIRDGRNKVTMKDLVDAITKI 375          
BLAST of CB291037 vs. ExPASy Swiss-Prot
Match: PRS6A_ENCCU (26S protease regulatory subunit 6A OS=Encephalitozoon cuniculi GN=RPT5 PE=1 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 5.560e-38
Identity = 76/154 (49.35%), Postives = 104/154 (67.53%), Query Frame = -1
Query:  304 ARSKKACIVFYDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLARLCPNSTGADIRSVCTEAGMFAIRA*RKTVTEKDFLDAVNKVI 765
            A+ +K  I+F DE+DAIG  R D    GD EVQRTMLE++NQLDGF +   +K++ ATNR D LDPALLR GRLDRK+EF LP+   R +I +IH R M+   D+ F+ LAR      GA  ++VC EAGM A+R  +  +++ DF+D + +V+
Sbjct:  237 AKERKPTIIFIDEIDAIGAKRSDSDQTGDREVQRTMLELLNQLDGFSSSEEVKIIAATNRVDILDPALLRSGRLDRKIEFPLPNTLGRKRILQIHARKMSVRDDVNFDELARSTEGFNGAQCKAVCVEAGMAALRKEKTEISQNDFMDGIQEVL 390          
BLAST of CB291037 vs. ExPASy Swiss-Prot
Match: PRS6A_MOUSE (26S protease regulatory subunit 6A OS=Mus musculus GN=Psmc3 PE=2 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 7.262e-38
Identity = 78/153 (50.98%), Postives = 104/153 (67.97%), Query Frame = -1
Query:  307 ARSKKACIVFYDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLARLCPNSTGADIRSVCTEAGMFAIRA*RKTVTEKDFLDAVNKV 765
            A+ K   I+F DE+DAIG  RFD    GD EVQRTMLE++NQLDGF     +KV+ ATNR D LDPALLR GRLDRK+EF +P+ E+R +I +IH+R MN   D+ +E LAR   +  GA  ++VC EAGM A+R     +T +D ++ + +V
Sbjct:  278 AKEKAPSIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFQPNTQVKVIAATNRVDILDPALLRSGRLDRKIEFPMPNEEARARIMQIHSRKMNVSPDVNYEELARCTDDFNGAQSKAVCVEAGMIALRRGATELTHEDHMEGILEV 430          
The following BLAST results are available for this feature:
BLAST of CB291037 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 297
Match NameE-valueIdentityDescription
PSMR_METB63.260e-3848.37Proteasome-activating nucleotidase OS=Methanoregul... [more]
PRS6A_SCHPO4.257e-3852.9426S protease regulatory subunit 6A OS=Schizosaccha... [more]
PR6AB_XENLA4.257e-3850.3326S protease regulatory subunit 6A-B OS=Xenopus la... [more]
PSMR_SULIY5.560e-3849.67Proteasome-activating nucleotidase OS=Sulfolobus i... [more]
PSMR_SULIM5.560e-3849.67Proteasome-activating nucleotidase OS=Sulfolobus i... [more]
PSMR_SULIL5.560e-3849.67Proteasome-activating nucleotidase OS=Sulfolobus i... [more]
PSMR_SULIK5.560e-3849.67Proteasome-activating nucleotidase OS=Sulfolobus i... [more]
PSMR_SULIA5.560e-3849.67Proteasome-activating nucleotidase OS=Sulfolobus i... [more]
PRS6A_ENCCU5.560e-3849.3526S protease regulatory subunit 6A OS=Encephalitoz... [more]
PRS6A_MOUSE7.262e-3850.9826S protease regulatory subunit 6A OS=Mus musculus... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_02ba10_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_02ba10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB291037 ID=CB291037; Name=CB291037; organism=Citrus sinensis; type=EST; length=765bp
TTTTTTTAGAAAGAAATATTCATAAAATAATTTAATCGTTTGTTCTAACA
GAAATTGGAAAATCCACGTAATTATGACATCATACAAAATGGTTCTTGAG
AGGGCAAATGTTACGCAAACACAGCAAGTTTAAACAACAGAGAATCAAAT
TGATGGGACAGCCTCTCAAAGGAACTTCATGATCTTGGATAACCCTCTGA
GAAGGTGGAACAATTGCGTCCAAGCATCTCTCCAAAAAGAAAAACATCGG
AATCAATTGTAGACCATATATTTAGGCGTTGCACTGAACTTTTGATATCC
CTTGATGACTTTGTTCACTGCATCGAGGAAGTCTTTCTCTGTCACTGTTT
TTCTTCATGCCCGGATGGCAAACATCCCAGCTTCTGTGCATACACTCCTT
ATATCAGCTCCGGTGGAATTGGGGCAAAGCCTAGCCAATAGCTCAAAGCG
GATATCTCTTTCACAGTTCATTGTTCGCGTGTGGATCTTAAATATCTGTG
TCCGGCTCTCCAAATCAGGAAGGCCAAACTCAACCTTACGATCTAATCGT
CCGGGACGCAACAGGGCCGGATCAAGTGTGTCAGGCCTGTTTGTTGCCAT
TAGAACTTTGATATTTCCACGAGCATCAAACCCATCAAGCTGATTCACAA
TTTCAAGCATTGTGCGTTGAACCTCGTTGTCCCCGCCAACACCATCATCA
AAACGTGCACCTCCTATAGCATCAACTTCATCATAGAAGACAATACAAGC
CTTCTTTGAACGTGC
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