CB291048

Overview
NameCB291048
Unique NameCB291048
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length937
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB291048 vs. ExPASy Swiss-Prot
Match: THIO_OPHHA (Thioredoxin OS=Ophiophagus hannah GN=TXN PE=3 SV=3)

HSP 1 Score: 88.9669 bits (219), Expect = 4.331e-17
Identity = 37/83 (44.58%), Postives = 59/83 (71.08%), Query Frame = -2
Query:  184 VVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTIAKHL 432
            +VVDF+A+WCGPC+ I PF   + +K P+V+F+++DVD+ + VA+   V+ MPTF F K  + V +  GA KE+L++ I K++
Sbjct:   23 IVVDFSATWCGPCKMIKPFFHSMVEKYPDVVFIEIDVDDAQDVASHCDVKCMPTFQFYKNNEKVHEFSGANKEKLEEAIKKYM 105          
BLAST of CB291048 vs. ExPASy Swiss-Prot
Match: THIO_PONAB (Thioredoxin OS=Pongo abelii GN=TXN PE=3 SV=3)

HSP 1 Score: 88.5817 bits (218), Expect = 5.657e-17
Identity = 42/80 (52.50%), Postives = 59/80 (73.75%), Query Frame = -2
Query:  196 VVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTF-MFLKEGKIVDKVVGAKKEELQQTI 432
            VVVDF+A+WCGPC+ I PF   L++K  NV+FL+VDVD+ + VA++  V+ MPTF  F K+G+ V +  GA KE+L+ TI
Sbjct:   23 VVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVDDCQDVASECEVKCMPTFQFFFKKGQKVGEFSGANKEKLEATI 102          
BLAST of CB291048 vs. ExPASy Swiss-Prot
Match: THIO_GEOCY (Thioredoxin OS=Geodia cydonium GN=THIO PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.260e-16
Identity = 44/83 (53.01%), Postives = 57/83 (68.67%), Query Frame = -2
Query:  187 VVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGK-IVDKVVGAKKEELQQTIAKH 432
            VV+DFTASWCGPC+ IAP   E+AK+ P+V+F KVDVDE    A    ++AMPTF F K GK + D V GA +  L++ I K+
Sbjct:   23 VVIDFTASWCGPCQRIAPKYVEMAKEFPDVIFYKVDVDENDETAEAEKIQAMPTFKFYKSGKALSDYVQGANEAGLREKIKKN 105          
BLAST of CB291048 vs. ExPASy Swiss-Prot
Match: TRXH_CHLRE (Thioredoxin H-type OS=Chlamydomonas reinhardtii GN=TRXH PE=1 SV=3)

HSP 1 Score: 83.9593 bits (206), Expect = 1.393e-15
Identity = 41/85 (48.24%), Postives = 56/85 (65.88%), Query Frame = -2
Query:  181 VVVDFTASWCGPCRFIAPFLAELAKKLPN-VLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTIAKHLA 432
            +VVDFTA+WCGPC+ IAP    L+      V+FLKVDVD + +VA    + AMPTF   K+G   D +VGA +++L+  +AKH A
Sbjct:   28 IVVDFTATWCGPCKMIAPLFETLSNDYAGKVIFLKVDVDAVAAVAEAAGITAMPTFHVYKDGVKADDLVGASQDKLKALVAKHAA 112          
BLAST of CB291048 vs. ExPASy Swiss-Prot
Match: TRX1_YEAST (Thioredoxin-1 OS=Saccharomyces cerevisiae GN=TRX1 PE=1 SV=3)

HSP 1 Score: 83.9593 bits (206), Expect = 1.393e-15
Identity = 41/80 (51.25%), Postives = 52/80 (65.00%), Query Frame = -2
Query:  193 VVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTIA 432
            VVVDF A+WCGPC+ IAP + + +++ P   F K+DVDEL  VA    V AMPT +  K GK V KVVGA    ++Q IA
Sbjct:   21 VVVDFYATWCGPCKMIAPMIEKFSEQYPQADFYKLDVDELGDVAQKNEVSAMPTLLLFKNGKEVAKVVGANPAAIKQAIA 100          
BLAST of CB291048 vs. ExPASy Swiss-Prot
Match: TRX2_YEAST (Thioredoxin-2 OS=Saccharomyces cerevisiae GN=TRX2 PE=1 SV=3)

HSP 1 Score: 83.1889 bits (204), Expect = 2.377e-15
Identity = 39/83 (46.99%), Postives = 55/83 (66.27%), Query Frame = -2
Query:  184 VVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTIAKHL 432
            VVVDF A+WCGPC+ IAP + + A++  +  F K+DVDE+  VA    V +MPT +F K GK V +VVGA    ++Q IA ++
Sbjct:   22 VVVDFFATWCGPCKMIAPMIEKFAEQYSDAAFYKLDVDEVSDVAQKAEVSSMPTLIFYKGGKEVTRVVGANPAAIKQAIASNV 104          
BLAST of CB291048 vs. ExPASy Swiss-Prot
Match: THIO1_CAEEL (Thioredoxin-1 OS=Caenorhabditis elegans GN=trx-1 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 2.377e-15
Identity = 34/84 (40.48%), Postives = 57/84 (67.86%), Query Frame = -2
Query:  181 VVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTIAKHLA 432
            +++DF A+WCGPC+ IAP   ELA     ++F KVDVDE + + + + V+ MPTF+F K G  ++ + G  ++EL+Q + +H++
Sbjct:   30 IILDFYATWCGPCKAIAPLYKELATTHKGIIFCKVDVDEAEDLCSKYDVKMMPTFIFTKNGDAIEALEGCVEDELRQKVLEHVS 113          
BLAST of CB291048 vs. ExPASy Swiss-Prot
Match: THIO_PLAF7 (Thioredoxin OS=Plasmodium falciparum (isolate 3D7) GN=PF14_0545 PE=1 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 3.104e-15
Identity = 39/84 (46.43%), Postives = 52/84 (61.90%), Query Frame = -2
Query:  181 VVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTIAKHLA 432
            V+VDF A WCGPC+ IAPF  E +K    ++F+KVDVDE+  V     + +MPTF   K G  VD ++GA    L+Q I K+ A
Sbjct:   21 VIVDFFAEWCGPCKRIAPFYEECSKTYTKMVFIKVDVDEVSEVTEKENITSMPTFKVYKNGSSVDTLLGANDSALKQLIEKYAA 104          
BLAST of CB291048 vs. ExPASy Swiss-Prot
Match: THIO_ICTPU (Thioredoxin OS=Ictalurus punctatus GN=txn PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 5.295e-15
Identity = 40/84 (47.62%), Postives = 55/84 (65.48%), Query Frame = -2
Query:  187 VVVDFTASWCGPCRFIAPFLAELAKK--LPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTIAKH 432
            VVVDFTA+WCGPC+ I P    L+K     NV+FLKVDVD+   V++   ++ MPTF F K G+ +D+  GA ++ L+Q I  H
Sbjct:   23 VVVDFTATWCGPCQKIGPIFETLSKSEDYQNVVFLKVDVDDAADVSSHCDIKCMPTFHFYKNGQKIDEFSGANEQTLKQKINDH 106          
BLAST of CB291048 vs. ExPASy Swiss-Prot
Match: THIO2_DROME (Thioredoxin-2 OS=Drosophila melanogaster GN=Trx-2 PE=1 SV=2)

HSP 1 Score: 82.0333 bits (201), Expect = 5.295e-15
Identity = 38/84 (45.24%), Postives = 58/84 (69.05%), Query Frame = -2
Query:  184 VVVDFTASWCGPCRFIAPFLAELAKKLP-NVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTIAKHL 432
            VV+DF A+WCGPC+ I+P L EL+ +   NV+ LKVDVDE + +A ++ + +MPTF+FLK G  V++  GA  + L+  I  ++
Sbjct:   31 VVLDFFATWCGPCKMISPKLVELSTQFADNVVVLKVDVDECEDIAMEYNISSMPTFVFLKNGVKVEEFAGANAKRLEDVIKANI 114          
The following BLAST results are available for this feature:
BLAST of CB291048 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 101
Match NameE-valueIdentityDescription
THIO_OPHHA4.331e-1744.58Thioredoxin OS=Ophiophagus hannah GN=TXN PE=3 SV=3[more]
THIO_PONAB5.657e-1752.50Thioredoxin OS=Pongo abelii GN=TXN PE=3 SV=3[more]
THIO_GEOCY1.260e-1653.01Thioredoxin OS=Geodia cydonium GN=THIO PE=3 SV=1[more]
TRXH_CHLRE1.393e-1548.24Thioredoxin H-type OS=Chlamydomonas reinhardtii GN... [more]
TRX1_YEAST1.393e-1551.25Thioredoxin-1 OS=Saccharomyces cerevisiae GN=TRX1 ... [more]
TRX2_YEAST2.377e-1546.99Thioredoxin-2 OS=Saccharomyces cerevisiae GN=TRX2 ... [more]
THIO1_CAEEL2.377e-1540.48Thioredoxin-1 OS=Caenorhabditis elegans GN=trx-1 P... [more]
THIO_PLAF73.104e-1546.43Thioredoxin OS=Plasmodium falciparum (isolate 3D7)... [more]
THIO_ICTPU5.295e-1547.62Thioredoxin OS=Ictalurus punctatus GN=txn PE=3 SV=... [more]
THIO2_DROME5.295e-1545.24Thioredoxin-2 OS=Drosophila melanogaster GN=Trx-2 ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS01_02bb06_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_02bb06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB291048 ID=CB291048; Name=CB291048; organism=Citrus sinensis; type=EST; length=937bp
TTTTTTTTTTTTTTTTGAGCTTCATAGAACAGTAAATTACGGAATATTCA
AACACACAAACAAACACAATCCCATAACCACTCTAATAAGTAAATTACAG
ACTGATAGCATATATTGAGGTCTATAGCCTCTAAAGCCAAAAGGCAGGAG
GATAGTTATAACTTATTAGGCAGAAGCAGTTGCCAGATGCTTGGCAATAG
TCTGCTGCAGTTCCTCTTTCTTTGCTCCAACCACCTTGTCCACAATCTTC
CCCTCTTTCAGGAACATGAAAGTTGGCATGGCCTCCACTGCCCAGTCAGT
GGCAACACTCTTCAGTTCATCCACATCAACCTTCAGAAACAGGACATTAG
GCAGTTTCTTGGCCAGCTCTGCCAAGAAAGGAGCAATGAAACGGCATGGT
CCGCACCATGAAGCAGTGAAATCAACAACAACCTGTATCAATGAAGGAGC
TCAGGCAATGCCAAACAACTGCTAACAGCAAAACCATCAATCATAATCAA
ATGAGTAGTGCTACACATCCCAAATTTTTTATCCCAAAAAACTATCCTAA
ATGACGTGGCATTTATCAATTTTTTGGTGAGATAATACAATTAATTCACT
TAGATCTTGTAAAGAATTATCAACCACTCAATTAATAACACATCACTTGG
TATCAAATTTGAGATAAAAGATTTGAGATGTCTATCATTATTCTAATCAA
ATATCCACCACTACTAACAAAAAGAGGTCCACCTCACCAATAAAAACTGG
CGTGACACAATACTACTATGACAATTGACTAAACAGTAATTGAAACAGTC
CAAAAAGAATATAGTGTAATTAGCAGACTATGTCAAGTGAGGTAAATACA
AGTAGGCAGCGCCACAAATATCGTCACTTCGGGCATGGCTAGGGCCTCAT
CAGACGACATTTTATACAAAAGCTTTAAAATTCATTT
back to top