CB291050

Overview
NameCB291050
Unique NameCB291050
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length809
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB291050 vs. ExPASy Swiss-Prot
Match: RL11_METAC (50S ribosomal protein L11P OS=Methanosarcina acetivorans GN=rpl11p PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.570e-14
Identity = 44/145 (30.34%), Postives = 85/145 (58.62%), Query Frame = -2
Query:  278 VTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTVQNRQ-AKVAV-VPSAAALVIKALKEPERDRKKTKNIKHNGNITLDDVIEIAKVMRPRSMAKDLSGTVKEILGTCVSVGCTVDGKDPRDLQQEITDG 706
            V GG+      L P +GPLG++ K++ E I ++T +D+ G++V VK+ V +++  ++ V  P  A+LV+K L   +        +   GN+T+  V ++A++ +   ++ DL   +KE++G+CV +G  V+G   +D Q+ + +G
Sbjct:    9 VPGGKANPGPPLGPALGPLGVNIKEVVEKINEKT-RDYNGMQVPVKVIVDDKKNVEIEVGTPPTASLVMKELGIQKGSGNAGSEVV--GNLTISQVAKVARMKKEDVLSYDLKAAMKEVMGSCVPMGVNVEGMKAKDCQKALDEG 150          
BLAST of CB291050 vs. ExPASy Swiss-Prot
Match: RL11_DESK1 (50S ribosomal protein L11P OS=Desulfurococcus kamchatkensis (strain 1221n / DSM 18924) GN=rpl11p PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.570e-14
Identity = 50/152 (32.89%), Postives = 86/152 (56.58%), Query Frame = -2
Query:  278 VYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTVQ--NRQAKVAV-VPSAAALVIK--ALKEPERDRKKTKNIKHNGNITLDDVIEIAKVMRPRSMAKDLSGTVKEILGTCVSVGCTVDGKDPRDLQQEITDG 718
            + V V GG+      L P + P  ++  ++ + I  +  KD++GL V V++T+    ++ +V V +P+  AL++K    K+P  D    K     GNI+ + V+++A + R    AK L   VK +LGT  S+G TVDGKDP+++Q+ + +G
Sbjct:    6 IRVMVEGGKATPGPPLGPTLSPYKVNIPQVVKAI-NDATKDFEGLSVPVEITIDIDTKEFEVRVGIPTTTALLMKEAGAKQPTGDPAHQKI----GNISFEQVVKVAILKRDSLTAKTLRAAVKTVLGTARSIGITVDGKDPKEVQKLVDEG 152          
BLAST of CB291050 vs. ExPASy Swiss-Prot
Match: YD417_YEAST (Putative uncharacterized protein YDR417C OS=Saccharomyces cerevisiae GN=YDR417C PE=5 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 7.953e-14
Identity = 38/70 (54.29%), Postives = 47/70 (67.14%), Query Frame = 3
Query:  555 FWTVSLTVTRKPFQSLAVSLAMSSPIFFGERPRGPIFGARELAAPTSPPVTRTYTSTTWLGSNFGGMIAL 764
            FW  + TVT  P  SL V+LA+SSP FFG++P GPIFGA+   APTSPP    Y   T  GSNFGG++ +
Sbjct:   39 FWIFNWTVTLIPLNSL-VALAISSPTFFGDKPNGPIFGAKAAEAPTSPPTALKYKYLTSFGSNFGGILTI 107          
BLAST of CB291050 vs. ExPASy Swiss-Prot
Match: RL11_SULTO (50S ribosomal protein L11P OS=Sulfolobus tokodaii GN=rpl11p PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.314e-13
Identity = 51/154 (33.12%), Postives = 80/154 (51.95%), Query Frame = -2
Query:  278 VYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAK--ETAKDWKGLRVTVKLTVQNRQAKVAV---VPSAAALVIKALK--EPERDRKKTKNIKHNGNITLDDVIEIAKVMRPRSMAKDLSGTVKEILGTCVSVGCTVDGKDPRDLQQEITDG 718
            + + V GG V     LAP +  LGL+   +GE + K  +    +KG+ V V L V     K  +   +P+  +L++K     EP  D    K     G+I  +D+I++A + +P+  AK L   VK ILGT  S+G TVD K P++L + + +G
Sbjct:    6 IKIVVEGGNVKPGPPLAPTLSQLGLN---VGEVVKKINDATSQFKGMSVPVTLEVDTDTKKYEIKVGIPTTTSLLLKFANASEPSGDPAHKKV----GDIKFEDIIQVAIMKKPQITAKTLKAAVKSILGTAHSIGLTVDKKSPKELVKAVDEG 152          
BLAST of CB291050 vs. ExPASy Swiss-Prot
Match: RL11_NANEQ (50S ribosomal protein L11P OS=Nanoarchaeum equitans GN=rpl11p PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.148e-12
Identity = 44/152 (28.95%), Postives = 84/152 (55.26%), Query Frame = -2
Query:  278 VDVYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTV--QNRQAKVAV-VPSAAALVIKALKEPERDRKKTKNIKHNGNITLDDVIEIAKVMRPRSMAKDLSGTVKEILGTCVSVGCTVDGKDPRDLQQEITDG 724
            + + + VTGG+      + P + P  ++P K+  +I K T K+++GL V V++ +  + ++ K+ V +P  +AL++KA       ++     +  GN+++ DV+EIAK          L   VK +LGT  + G  V+ KDP+++ +E+ +G
Sbjct:    4 IAIRLLVTGGKATPGPPIGPALSPFKINPGKVVAEINKLT-KEYEGLPVPVEIIINPETKEYKIIVGLPPTSALLMKAAGVTRGPQRTVH--EWVGNVSMKDVVEIAKKKIDSMPTSSLKAAVKSVLGTARATGIKVENKDPKEVTKEVDEG 152          
BLAST of CB291050 vs. ExPASy Swiss-Prot
Match: RL11_HALMA (50S ribosomal protein L11P OS=Haloarcula marismortui GN=rpl11p PE=1 SV=3)

HSP 1 Score: 68.9366 bits (167), Expect = 3.694e-11
Identity = 43/152 (28.29%), Postives = 81/152 (53.29%), Query Frame = -2
Query:  269 VYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAK-DWKGLRVTVKLTVQNR-QAKVAVVPSAAALVIKALKEPERDRKKTKNIKHNGNITLDDVIEIAKVMRPRSMAKDLSGTVKEILGTCVSVGCTVDGKDPRDLQQEITDGDVE 718
            + V V GGE      L P++GP  +  + + ++I  +TA  D   + VTVK       + +V V P+A  +  +A  E      +   +    ++++D V +IA+   P  ++ DL+   KE++GTC S+G T++G++PR+ ++ I  G+ +
Sbjct:    5 IEVLVPGGEANPGPPLGPELGPTPVDVQAVVQEINDQTAAFDGTEVPVTVKYDDDGSFEIEVGVPPTAELIKDEAGFETGSGEPQEDFV---ADLSVDQVKQIAEQKHPDLLSYDLTNAAKEVVGTCTSLGVTIEGENPREFKERIDAGEYD 153          
The following BLAST results are available for this feature:
BLAST of CB291050 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 66
Match NameE-valueIdentityDescription
RL11_METAC3.570e-1430.3450S ribosomal protein L11P OS=Methanosarcina aceti... [more]
RL11_DESK13.570e-1432.8950S ribosomal protein L11P OS=Desulfurococcus kamc... [more]
YD417_YEAST7.953e-1454.29Putative uncharacterized protein YDR417C OS=Saccha... [more]
RL11_SULTO2.314e-1333.1250S ribosomal protein L11P OS=Sulfolobus tokodaii ... [more]
RL11_NANEQ1.148e-1228.9550S ribosomal protein L11P OS=Nanoarchaeum equitan... [more]
RL11_HALMA3.694e-1128.2950S ribosomal protein L11P OS=Haloarcula marismort... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_02bb07_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_02bb07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB291050 ID=CB291050; Name=CB291050; organism=Citrus sinensis; type=EST; length=809bp
TTTTTTTTTTTTTTTTTAATTTCAAAGATCCAATATACGTCTTCTGAAGC
ATCATTCAACATAAGTCCACTAAATTAAACCTTACATCTCCTAAATTCCA
ATAATAAAGCACTCGTTTAAAGCTCGAATAATTGGAGACATCATCAAAAT
CCTTGTAAAGATCCAAAACTGATAATTAAAAAAAAAGGCACTGATATATA
GAGATAAAAACAAAAATTAAAATCTAAAATAGACCCCCTCACAAACAGAG
TCTTCAATCAAGAGGAATTTCGACATCACCATCAGTGATCTCCTGCTGCA
GGTCCCTAGGGTCCTTGCCATCGACCGTACACCCAACAGAAACGCATGTG
CCCAAAATCTCCTTAACGGTGCCACTCAAATCCTTAGCCATCGACCTGGG
CCGCATCACTTTTGCGATTTCGATGACGTCATCGAGGGTAATGTTGCCGT
TGTGCTTGATGTTCTTGGTCTTCTTCCTGTCCCTCTCGGGTTCCTTGAGG
GCTTTAATCACCAGGGCGGCGGCGGAGGGAACGACGGCGACCTTGGCCTG
ACGGTTCTGGACGGTGAGCTTGACGGTGACACGTAAGCCCTTCCAGTCCT
TGGCGGTTTCCTTGGCGATGTCCTCTCCGATTTTCTTTGGGGAGAGACCG
AGGGGACCGATCTTTGGGGCGAGGGAACTGGCGGCTCCCACCTCGCCACC
GGTCACGCGGACGTACACGTCCACCACTTGGCTCGGGTCGAACTTCGGCG
GCATGATTGCTCTGCTGGTTACGGCTACAAAGAGTGTGTGAAGTGCTTTT
TGCCTCGTG
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