CB291051

Overview
NameCB291051
Unique NameCB291051
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length781
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB291051 vs. ExPASy Swiss-Prot
Match: RL11_PICTO (50S ribosomal protein L11P OS=Picrophilus torridus GN=rpl11p PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 4.213e-17
Identity = 54/158 (34.18%), Postives = 94/158 (59.49%), Query Frame = -3
Query:  270 VVDVYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTVQNRQAK----VAVVPSAAALVIKALKEPERDRKKTKNIKHNGNITLDDVIEIAKVMRPRSMAKDLSGPVKEILGTCVFVGCTVDGKDPRDLQQEITDGDVEI 731
            +V V   V GG+      L P +GPLGL+  ++ +DI ++T K++ G++V V + V +   K    +  VP  +AL+ K L   +   KK + I   GN TL+ + ++A+  R   ++ ++ G V E+LG+ V +G TVDG+DP+++Q+ I +G++EI
Sbjct:    1 MVAVKTMVEGGKATTGPPLGPALGPLGLNLGQVVKDINEKT-KNFAGMQVPVTVNVIDPATKKYEIIVGVPPTSALLKKELGIEKGASKKKEKIA--GNATLEQIKKVAESKRSALLSYNMKGAVLEVLGSAVSLGITVDGRDPKEVQKMIKNGEIEI 155          
BLAST of CB291051 vs. ExPASy Swiss-Prot
Match: RL11_METTH (50S ribosomal protein L11P OS=Methanobacterium thermoautotrophicum GN=rpl11p PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 5.502e-17
Identity = 52/150 (34.67%), Postives = 90/150 (60.00%), Query Frame = -3
Query:  282 VYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTVQN--RQAKVAV-VPSAAALVIKALKEPERDRKKTKNIKHNGNITLDDVIEIAKVMRPRSMAKDLSGPVKEILGTCVFVGCTVDGKDPRDLQQEITDG 722
            V + + GG+      L P IGPLG++  ++ E+I ++TA D++G++V VK+ V    R  +V V  P   AL++  LK  +  +     +    +I+++ V++IA++     ++ D    VKEI+GTCV +G TV+GKDPR++Q+E+  G
Sbjct:    6 VEILIDGGKATPGPPLGPAIGPLGINMMQVVEEINRKTA-DFEGMKVPVKIIVDTDTRDFEVEVGTPPTTALIMDELKLEKGSQDP--GMDKIADISMEQVLKIARMKFDALLSNDYKRAVKEIMGTCVSMGITVNGKDPREVQREVDQG 152          
BLAST of CB291051 vs. ExPASy Swiss-Prot
Match: RL11_METHJ (50S ribosomal protein L11P OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=rpl11p PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 5.502e-17
Identity = 52/150 (34.67%), Postives = 86/150 (57.33%), Query Frame = -3
Query:  282 VYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTVQNRQ---AKVAVVPSAAALVIKALKEPERDRKKTKNIKHNGNITLDDVIEIAKVMRPRSMAKDLSGPVKEILGTCVFVGCTVDGKDPRDLQQEITDG 722
            V V V GG+  A   L P +GPLG++ K + ++I K+TA  + G++V V++ V  ++     V + P+ A ++ +A  E       TK +   G++ L+  + IAK+     ++ DL   VKE++GTCV +G TV GK P+D+ +EI  G
Sbjct:    5 VEVLVPGGKATAGPPLGPALGPLGINVKAVVDEINKKTAS-FNGMQVPVRVEVDEKKNFTISVGIPPTTALIMKEAGVEKGSGEPNTKIV---GDVPLEAAVTIAKMKLDDMLSYDLKNAVKEVVGTCVSLGITVSGKKPKDMLKEIDSG 150          
BLAST of CB291051 vs. ExPASy Swiss-Prot
Match: RL11_METMJ (50S ribosomal protein L11P OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=rpl11p PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 7.186e-17
Identity = 53/152 (34.87%), Postives = 88/152 (57.89%), Query Frame = -3
Query:  273 VYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTVQNRQAKVAVV--PSAAALVIKALKEPERDRKKTKNIKHNGNITLDDVIEIAKVMRPRSMAKDLSGPVKEILGTCVFVGCTVDGKDPRDLQQEITDGDVE 722
            V V V GG+  A   L P +GPLG++ K + +DI K+TA ++ G++V V +TV +++     V  P   ALV+K     +   +    +   G++ L+  + IA++     ++ DL   VKE+LGTCV VG TV+GK PR++ Q + +G+ +
Sbjct:    5 VEVLVPGGKATAGPPLGPALGPLGINVKAVVDDINKKTA-EFNGMQVPVTVTVDDKKNFTIEVGIPPTTALVMKEAGITKGSTEPGALVA--GDLPLEAAVRIARMKFDGMLSYDLKSAVKEVLGTCVSVGVTVEGKKPREMIQAVNNGEYD 153          
BLAST of CB291051 vs. ExPASy Swiss-Prot
Match: RL11_UNCMA (50S ribosomal protein L11P OS=Uncultured methanogenic archaeon RC-I GN=rpl11p PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.731e-16
Identity = 52/149 (34.90%), Postives = 84/149 (56.38%), Query Frame = -3
Query:  282 VYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTVQ-NRQAKVAV-VPSAAALVIKALKEPERDRKKTKNIKHNGNITLDDVIEIAKVMRPRSMAKDLSGPVKEILGTCVFVGCTVDGKDPRDLQQEITDG 722
            V V V GG+      L P +GPLG++ KK+ ++I  +T KD+ G+ V VK+ V  +R   V V  P  +ALV+  LK  +     T N    G++T++  I++A++ R   ++  L   VKE+ GTCV +G  ++GK P++   E+  G
Sbjct:    5 VEVLVPGGKANPGPPLGPALGPLGINIKKVVDEINNKT-KDYNGMTVPVKVIVDASRNFTVEVGTPPTSALVLSELKLEKGSG--TPNTNFIGSLTIEQAIKVAQMKRDAMLSYTLKNAVKEVAGTCVSLGVMIEGKKPKEFIAEVNAG 150          
BLAST of CB291051 vs. ExPASy Swiss-Prot
Match: RL11_METM7 (50S ribosomal protein L11P OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=rpl11p PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.731e-16
Identity = 53/157 (33.76%), Postives = 88/157 (56.05%), Query Frame = -3
Query:  273 QVVDVYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTVQNRQAKVAV---VPSAAALVIKALKEPERDRKKTKNIKHNGNITLDDVIEIAKVMRPRSMAKDLSGPVKEILGTCVFVGCTVDGKDPRDLQQEITDGDVE 734
            QVV++ V  +GG+  A   L P IGPLG++  ++ + I  E  KD+ G+ V VK+ V   +    V   +P A+ALV K L      ++    +   GN+T++ V++IAK+ +   +A +L    KE++GTCV VG  V+G  P++ Q+ +  G  +
Sbjct:    4 QVVEILV--SGGKATAGPPLGPAIGPLGVNIMQVVQKI-NEMTKDYDGMSVPVKVIVNTDKRTFEVEVGIPPASALVKKELGITTGSQEPKHQVA--GNLTMEQVVKIAKMKQDAMLAYNLKNASKEVIGTCVSVGVNVEGMTPKEAQKAVDAGQFD 155          
BLAST of CB291051 vs. ExPASy Swiss-Prot
Match: RL11_METM6 (50S ribosomal protein L11P OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=rpl11p PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.731e-16
Identity = 53/157 (33.76%), Postives = 88/157 (56.05%), Query Frame = -3
Query:  273 QVVDVYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTVQNRQAKVAV---VPSAAALVIKALKEPERDRKKTKNIKHNGNITLDDVIEIAKVMRPRSMAKDLSGPVKEILGTCVFVGCTVDGKDPRDLQQEITDGDVE 734
            QVV++ V  +GG+  A   L P IGPLG++  ++ + I  E  KD+ G+ V VK+ V   +    V   +P A+ALV K L      ++    +   GN+T++ V++IAK+ +   +A +L    KE++GTCV VG  V+G  P++ Q+ +  G  +
Sbjct:    4 QVVEILV--SGGKATAGPPLGPAIGPLGVNIMQVVQKI-NEMTKDYDGMSVPVKVIVNTDKRTFEVEVGIPPASALVKKELGITTGSQEPKHQVA--GNLTMEQVVKIAKMKQDAMLAYNLKNASKEVIGTCVSVGVNVEGMTPKEAQKAVDAGQFD 155          
BLAST of CB291051 vs. ExPASy Swiss-Prot
Match: RL11_METS5 (50S ribosomal protein L11P OS=Metallosphaera sedula (strain ATCC 51363 / DSM 5348) GN=rpl11p PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.566e-16
Identity = 59/154 (38.31%), Postives = 82/154 (53.25%), Query Frame = -3
Query:  282 VYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAK--ETAKDWKGLRVTVKLTVQNRQAKVAV---VPSAAALVIK--ALKEPERDRKKTKNIKHNGNITLDDVIEIAKVMRPRSMAKDLSGPVKEILGTCVFVGCTVDGKDPRDLQQEITDG 722
            + V V GG V     LAP +  LGL+   +GE + K  E    +KG+ V V L V     K  V   VP+  +L++K      P  D +  K     GNI++DDVIE+A   +P   AK+L G VK ILGT   +G TVD KDP+ + +E+ +G
Sbjct:    6 IKVVVEGGNVKPGPPLAPTLSQLGLN---VGEVVKKINEATSQFKGMTVPVTLDVDTDTKKYEVSVGVPTTTSLLVKKAGASGPSGDPEHKKI----GNISMDDVIEVAISKKPSLTAKELKGAVKSILGTAKSIGLTVDNKDPKLVVREVEEG 152          
BLAST of CB291051 vs. ExPASy Swiss-Prot
Match: RL11_METMP (50S ribosomal protein L11P OS=Methanococcus maripaludis GN=rpl11p PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 4.658e-16
Identity = 55/159 (34.59%), Postives = 91/159 (57.23%), Query Frame = -3
Query:  273 QVVDVYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTVQNRQAKVAV---VPSAAALVIKALKEPERDRKKTKNIKHN--GNITLDDVIEIAKVMRPRSMAKDLSGPVKEILGTCVFVGCTVDGKDPRDLQQEITDGDVE 734
            QVV++ V  +GG+  A   L P IGPLG++  ++ + I   T KD++G+ V VK+ V   +    V   +P A+AL+ K +       K ++  KH   GNIT++ +++IAK+ +   +A +L    KE++GTCV VG +V+G  P + Q+ I  G  +
Sbjct:    4 QVVEILV--SGGKATAGPPLGPAIGPLGVNIMQVVQKINNMT-KDYEGMSVPVKVIVDTDKRTFEVEVGIPPASALIKKEIGI----EKGSQEPKHQVAGNITMEQIVKIAKMKQDAMLAYNLKNASKEVVGTCVSVGISVEGMTPSEAQKAIDAGQFD 155          
BLAST of CB291051 vs. ExPASy Swiss-Prot
Match: RL11_METPE (50S ribosomal protein L11P OS=Methanosphaerula palustris (strain ATCC BAA-1556 / DSM 19958 / E1-9c) GN=rpl11p PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 6.084e-16
Identity = 51/156 (32.69%), Postives = 91/156 (58.33%), Query Frame = -3
Query:  261 VYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTVQNRQ-AKVAV-VPSAAALVIKALKEPERDRKKTKNIKHNGNITLDDVIEIAKVMRPRSMAKDLSGPVKEILGTCVFVGCTVDGKDPRDLQQEITDGDVEIPLD 722
            V V V GG   A   + P +GPLG++ K + +DI K+TA ++ G++V VK+ V +++   ++V +P   ALV+K +   +   +    I   G++ ++  + IA++     ++ +L   VKE++GTCV VG TVDGK P+++   I+ G  +  L+
Sbjct:    5 VEVLVPGGRATAGPPIGPALGPLGINVKAVVDDINKKTA-EFNGMQVPVKIEVDDKKNVTISVGIPPTTALVMKEVGIEKGSAEPNSIIV--GDLPIEAAVRIARMKLDDMLSYELKTAVKEVIGTCVSVGVTVDGKKPKEILAAISAGQYDSVLE 157          
The following BLAST results are available for this feature:
BLAST of CB291051 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 65
Match NameE-valueIdentityDescription
RL11_PICTO4.213e-1734.1850S ribosomal protein L11P OS=Picrophilus torridus... [more]
RL11_METTH5.502e-1734.6750S ribosomal protein L11P OS=Methanobacterium the... [more]
RL11_METHJ5.502e-1734.6750S ribosomal protein L11P OS=Methanospirillum hun... [more]
RL11_METMJ7.186e-1734.8750S ribosomal protein L11P OS=Methanoculleus maris... [more]
RL11_UNCMA2.731e-1634.9050S ribosomal protein L11P OS=Uncultured methanoge... [more]
RL11_METM72.731e-1633.7650S ribosomal protein L11P OS=Methanococcus maripa... [more]
RL11_METM62.731e-1633.7650S ribosomal protein L11P OS=Methanococcus maripa... [more]
RL11_METS53.566e-1638.3150S ribosomal protein L11P OS=Metallosphaera sedul... [more]
RL11_METMP4.658e-1634.5950S ribosomal protein L11P OS=Methanococcus maripa... [more]
RL11_METPE6.084e-1632.6950S ribosomal protein L11P OS=Methanosphaerula pal... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS01_02bb07_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_02bb07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB291051 ID=CB291051; Name=CB291051; organism=Citrus sinensis; type=EST; length=781bp
TTTTTTTTTTTTGTATTTTAAAGTTCAAAGATCCAATATACCCTTTTCTG
AAGCATCATTCAACATAAGTCCACTAAATTAAACCTTACATCTCCTAAAT
TCCAATAATAAAGCACTCGTTTAAAGCTCGAATAATTGGAGACATCATCA
AAATCCTTGTAAAGATCCAAAACTGATAATTAAAAAAAAAGGGACTGATA
TATAGAGATAAAAACAAAAATTAAAATCTAAAATAGACCCCCTCACAAAC
AGAGTCTTCAATCAAGAGGAATTTCGACATCACCATCAGTGATCTCCTGC
TGGAGGTCCCTAGGGTCCTTGCCATCGACCGTACACCCAACAAAAACGCA
TGTGCCCAAAATCTCCTTAACGGGGCCACTCAAATCCTTAGCCATCGACC
TGGGCCGCATCACTTTTGCGATTTCGATGACGTCATCGAGGGTAATGTTG
CCGTTGTGCTTGATGTTCTTGGTCTTCTTCCTGTCCCTCTCGGGTTCCTT
GAGGGCTTTAATCACCAGGGCGGCGGCGGAGGGAACAACGGCGACCTTGG
CCTGACGGTTCTGGACGGTGAGCTTGACGGTGACACGTAAGCCCTTCCAG
TCCTTGGCGGTTTCCTTGGCGATGTCCTCTCCGATTTTCTTTGGGGAGAG
ACCGAGGGGACCGATCTTTGGGGCGAGGGAACTGGCGGCTCCCACCTCGC
CACCGGTCACGCGGACGTACACGTCCACCACTTGGCTCGGGTCAAACTTC
GGCGGCATGATTGCTCTGCTGGTTACGGCTA
back to top