CB291055

Overview
NameCB291055
Unique NameCB291055
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length774
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB291055 vs. ExPASy Swiss-Prot
Match: ARL3_PONAB (ADP-ribosylation factor-like protein 3 OS=Pongo abelii GN=ARL3 PE=2 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 6.602e-31
Identity = 72/161 (44.72%), Postives = 102/161 (63.35%), Query Frame = -3
Query:  254 LRVGLDNSGKTTIVLKINGEDTSVISLTLGFNIKTITYQKSTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELANFLKEERLSGASLLILANKQDINGAFTPTEIAKVLTLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQDIASR 736
            L +GLDN+GKTT++ ++  ED S I+ T GFNIK++  Q   LN+WD+GGQR IR YW+NYFE TD L                 ELA  L+EE+LS   +LI ANKQD+  A   +EIA+ L L  + + R W+I  CSA TGEG+ +G +W+ +++ ++
Sbjct:   21 LLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQGFKLNVWDIGGQRKIRPYWKNYFENTDIL-----------------ELAELLEEEKLSCVPVLIFANKQDLLTAAPASEIAEGLNLHTI-RDRVWQIQSCSALTGEGVQDGMNWVCKNVNAK 163          
BLAST of CB291055 vs. ExPASy Swiss-Prot
Match: ARF4_BOVIN (ADP-ribosylation factor 4 OS=Bos taurus GN=ARF4 PE=2 SV=3)

HSP 1 Score: 134.42 bits (337), Expect = 6.602e-31
Identity = 70/162 (43.21%), Postives = 101/162 (62.35%), Query Frame = -3
Query:  254 LRVGLDNSGKTTIVLKIN-GEDTSVISLTLGFNIKTITYQKSTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELANFLKEERLSGASLLILANKQDINGAFTPTEIAKVLTLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQDIASR 736
            L VGLD +GKTTI+ K+  GE  + I  T+GFN++T+ Y+     +WDVGGQ  IR  WR+YF+ T GL++VVDS+D  R+ +   EL   L+E+ L  A LL+ ANKQD+  A   +E+   L L+++ + R W +    A  G GL EG DWL  +++ R
Sbjct:   21 LMVGLDAAGKTTILYKLKLGEIVTTIP-TIGFNVETVEYKNICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIQEGAEELQKMLQEDELRDAVLLLFANKQDLPNAMAISEMTDKLGLQSL-RNRTWYVQATCATQGTGLYEGLDWLSNELSKR 180          
BLAST of CB291055 vs. ExPASy Swiss-Prot
Match: ARF1_SCHPO (ADP-ribosylation factor 1 OS=Schizosaccharomyces pombe GN=arf1 PE=2 SV=2)

HSP 1 Score: 134.42 bits (337), Expect = 6.602e-31
Identity = 69/162 (42.59%), Postives = 101/162 (62.35%), Query Frame = -3
Query:  254 LRVGLDNSGKTTIVLKIN-GEDTSVISLTLGFNIKTITYQKSTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELANFLKEERLSGASLLILANKQDINGAFTPTEIAKVLTLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQDIASR 736
            L VGLD +GKTTI+ K+  GE  + I  T+GFN++T+ Y+  +  +WDVGGQ  IR  WR+YF+ T G+++VVDS+D  R+ +   EL   L E+ L  A LL+ ANKQD+  A    EI   L L ++ + R W I    A +G+GL EG +WL  ++ ++
Sbjct:   21 LMVGLDAAGKTTILYKLKLGEIVTTIP-TIGFNVETVEYRNISFTVWDVGGQDKIRPLWRHYFQNTQGIIFVVDSNDRERISEAHEELQRMLNEDELRDALLLVFANKQDLPNAMNAAEITDKLGLHSL-RHRQWYIQATCATSGDGLYEGLEWLSTNLKNQ 180          
BLAST of CB291055 vs. ExPASy Swiss-Prot
Match: ARF1_DICDI (ADP-ribosylation factor 1 OS=Dictyostelium discoideum GN=arfA PE=1 SV=3)

HSP 1 Score: 134.42 bits (337), Expect = 6.602e-31
Identity = 69/161 (42.86%), Postives = 99/161 (61.49%), Query Frame = -3
Query:  257 LRVGLDNSGKTTIVLKIN-GEDTSVISLTLGFNIKTITYQKSTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELANFLKEERLSGASLLILANKQDINGAFTPTEIAKVLTLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQDIAS 736
            L VGLD +GKTTI+ K+  GE  + I  T+GFN++T+ ++     +WDVGGQ  IR  WR+YF+ T GL++VVDS+D  R+ +   EL   L E+ L  A LL+  NKQD+  A +  E+   L L ++ ++R W I    A +G+GL EG DWL   + S
Sbjct:   21 LMVGLDAAGKTTILYKLKLGEIVTTIP-TIGFNVETVEFKNINFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIQEACDELTKMLNEDELRDAVLLVFCNKQDLPNAMSVAEVTDKLNLHSL-RSRKWYIQSTCATSGDGLYEGLDWLSNTLTS 179          
BLAST of CB291055 vs. ExPASy Swiss-Prot
Match: ARD1_RAT (GTP-binding protein ARD-1 (Fragment) OS=Rattus norvegicus GN=Trim23 PE=2 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 6.602e-31
Identity = 66/158 (41.77%), Postives = 97/158 (61.39%), Query Frame = -3
Query:  257 VGLDNSGKTTIVLKINGEDTSVISLTLGFNIKTITYQKSTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELANFLKEERLSGASLLILANKQDINGAFTPTEIAKVLTLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQDIAS 730
            +GLD +GKTTI+ K+  ++      T+GFN++T+ Y+     IWDVG +  +R  W++Y+  T  +V+VVDSS   R+ +   ELA  L E+ L  A LLI ANKQD+ GA +  EI ++L+L  +   R W I GC A +G GL EG DWL + + +
Sbjct:  390 LGLDGAGKTTILFKLKQDEFMQPIPTIGFNVETVEYKNLKFTIWDVGEKHKLRPLWKHYYLNTQAVVFVVDSSHRDRISEAHSELAKLLTEKELRDALLLIFANKQDVAGALSVEEITELLSLHKLCCGRSWYIQGCDARSGMGLYEGLDWLSRQLVA 547          
BLAST of CB291055 vs. ExPASy Swiss-Prot
Match: ARF6_CHICK (ADP-ribosylation factor 6 OS=Gallus gallus GN=ARF6 PE=2 SV=3)

HSP 1 Score: 132.88 bits (333), Expect = 1.921e-30
Identity = 68/161 (42.24%), Postives = 100/161 (62.11%), Query Frame = -3
Query:  257 LRVGLDNSGKTTIVLKIN-GEDTSVISLTLGFNIKTITYQKSTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELANFLKEERLSGASLLILANKQDINGAFTPTEIAKVLTLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQDIAS 736
            L +GLD +GKTTI+ K+  G+  + I  T+GFN++T+TY+    N+WDVGGQ  IR  WR+Y+  T GL++VVD +D  R+D+ + EL   + +  +  A +LI ANKQD+  A  P EI + L L  + + R+W +    A TG+GL EG  WL  +  S
Sbjct:   17 LMLGLDAAGKTTILYKLKLGQSVTTIP-TVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRI-RDRNWYVQPSCATTGDGLYEGLTWLTSNYKS 175          
BLAST of CB291055 vs. ExPASy Swiss-Prot
Match: ARF5_RAT (ADP-ribosylation factor 5 OS=Rattus norvegicus GN=Arf5 PE=1 SV=2)

HSP 1 Score: 132.88 bits (333), Expect = 1.921e-30
Identity = 69/162 (42.59%), Postives = 101/162 (62.35%), Query Frame = -3
Query:  254 LRVGLDNSGKTTIVLKIN-GEDTSVISLTLGFNIKTITYQKSTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELANFLKEERLSGASLLILANKQDINGAFTPTEIAKVLTLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQDIASR 736
            L VGLD +GKTTI+ K+  GE  + I  T+GFN++T+ Y+     +WDVGGQ  IR  WR+YF+ T GL++VVDS+D  R+ +   EL   L+E+ L  A LL+ ANKQD+  A   +E+   L L+ + ++R W +    A  G GL +G DWL  +++ R
Sbjct:   21 LMVGLDAAGKTTILYKLKLGEIVTTIP-TIGFNVETVEYKNICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNAMPVSELTDKLGLQHL-RSRTWYVQATCATQGTGLYDGLDWLSHELSKR 180          
BLAST of CB291055 vs. ExPASy Swiss-Prot
Match: ARF5_MOUSE (ADP-ribosylation factor 5 OS=Mus musculus GN=Arf5 PE=2 SV=2)

HSP 1 Score: 132.88 bits (333), Expect = 1.921e-30
Identity = 69/162 (42.59%), Postives = 101/162 (62.35%), Query Frame = -3
Query:  254 LRVGLDNSGKTTIVLKIN-GEDTSVISLTLGFNIKTITYQKSTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELANFLKEERLSGASLLILANKQDINGAFTPTEIAKVLTLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQDIASR 736
            L VGLD +GKTTI+ K+  GE  + I  T+GFN++T+ Y+     +WDVGGQ  IR  WR+YF+ T GL++VVDS+D  R+ +   EL   L+E+ L  A LL+ ANKQD+  A   +E+   L L+ + ++R W +    A  G GL +G DWL  +++ R
Sbjct:   21 LMVGLDAAGKTTILYKLKLGEIVTTIP-TIGFNVETVEYKNICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNAMPVSELTDKLGLQHL-RSRTWYVQATCATQGTGLYDGLDWLSHELSKR 180          
BLAST of CB291055 vs. ExPASy Swiss-Prot
Match: ARF5_HUMAN (ADP-ribosylation factor 5 OS=Homo sapiens GN=ARF5 PE=1 SV=2)

HSP 1 Score: 132.88 bits (333), Expect = 1.921e-30
Identity = 69/162 (42.59%), Postives = 101/162 (62.35%), Query Frame = -3
Query:  254 LRVGLDNSGKTTIVLKIN-GEDTSVISLTLGFNIKTITYQKSTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELANFLKEERLSGASLLILANKQDINGAFTPTEIAKVLTLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQDIASR 736
            L VGLD +GKTTI+ K+  GE  + I  T+GFN++T+ Y+     +WDVGGQ  IR  WR+YF+ T GL++VVDS+D  R+ +   EL   L+E+ L  A LL+ ANKQD+  A   +E+   L L+ + ++R W +    A  G GL +G DWL  +++ R
Sbjct:   21 LMVGLDAAGKTTILYKLKLGEIVTTIP-TIGFNVETVEYKNICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNAMPVSELTDKLGLQHL-RSRTWYVQATCATQGTGLYDGLDWLSHELSKR 180          
BLAST of CB291055 vs. ExPASy Swiss-Prot
Match: ARF_ASHGO (ADP-ribosylation factor OS=Ashbya gossypii GN=ARF1 PE=3 SV=3)

HSP 1 Score: 132.494 bits (332), Expect = 2.509e-30
Identity = 64/161 (39.75%), Postives = 100/161 (62.11%), Query Frame = -3
Query:  254 LRVGLDNSGKTTIVLKINGEDTSVISLTLGFNIKTITYQKSTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELANFLKEERLSGASLLILANKQDINGAFTPTEIAKVLTLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQDIASR 736
            L VGLD +GKTT++ K+   +      T+GFN++T+ Y+  +  +WDVGGQ  IR  WR+YF  T+G+++VVDS+D  R+ + +  L   L E+ +  A LL+ ANKQD+  A +  EI + L L ++ + R W I    A +GEGL EG +WL  ++ ++
Sbjct:   21 LMVGLDGAGKTTVLYKLKLGEVVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFRNTEGIIFVVDSNDRSRIAEAREVLQRMLNEDEIRNAVLLVFANKQDLPEAMSAAEITEKLGLHSI-RQRPWYIQATCATSGEGLYEGLEWLSTNLKNQ 180          
The following BLAST results are available for this feature:
BLAST of CB291055 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 217
Match NameE-valueIdentityDescription
ARL3_PONAB6.602e-3144.72ADP-ribosylation factor-like protein 3 OS=Pongo ab... [more]
ARF4_BOVIN6.602e-3143.21ADP-ribosylation factor 4 OS=Bos taurus GN=ARF4 PE... [more]
ARF1_SCHPO6.602e-3142.59ADP-ribosylation factor 1 OS=Schizosaccharomyces p... [more]
ARF1_DICDI6.602e-3142.86ADP-ribosylation factor 1 OS=Dictyostelium discoid... [more]
ARD1_RAT6.602e-3141.77GTP-binding protein ARD-1 (Fragment) OS=Rattus nor... [more]
ARF6_CHICK1.921e-3042.24ADP-ribosylation factor 6 OS=Gallus gallus GN=ARF6... [more]
ARF5_RAT1.921e-3042.59ADP-ribosylation factor 5 OS=Rattus norvegicus GN=... [more]
ARF5_MOUSE1.921e-3042.59ADP-ribosylation factor 5 OS=Mus musculus GN=Arf5 ... [more]
ARF5_HUMAN1.921e-3042.59ADP-ribosylation factor 5 OS=Homo sapiens GN=ARF5 ... [more]
ARF_ASHGO2.509e-3039.75ADP-ribosylation factor OS=Ashbya gossypii GN=ARF1... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_02bb09_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_02bb09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB291055 ID=CB291055; Name=CB291055; organism=Citrus sinensis; type=EST; length=774bp
GGGGAAAAATAATTACTTTTCAATGCATTTGTTCATAATCTTGCTCTCTG
GACAGCCATTTCAGCTGTAAGATGGATCACCATCTACCCAACGGGCTCAT
TCTTGTACAACAGATACAGCTCATGAGCCAATCAATCACATGGGCATACA
TCTCACATGGTTTTGTCCCATAAACCACACTCTTTTTTTCACATTACAAG
GAAAATTTAAAAAATTTTTCTTGTACAACAACGGGTTAATCAAGAAGGTA
GATCCGGGAGGCAATGTCCTGAACTAACCAATCAAATCCCTCTAGCAGTC
CCTCACCTGTGTAGGCACTGCAACCCACAATTTTCCAGTGTCGAGTTTTG
TCCATGGCTTCCAAGGTCAGAACTTTAGCAATCTCTGTTGGGGTAAAAGC
ACCATTGATGTCCTGCTTATTTGCTAAAATCAATAAGGATGCCCCTGATA
GCCTCTCTTCCTTTAAAAAATTGGCTAATTCCATTTTGCAATCATCCAGT
CTTCTAAGATCGGAACTATCAACCACCCACACCAAACCATCAGTTTGCTC
AAAGTAATTCCTCCAATATGATCTTATAGTCCTTTGGCCTCCTACATCCC
ATATGTTTAAAGTGGACTTTTGGTAAGTAATGGTTTTGATATTGAATCCC
AGGGTAAGACTGATAACGCTAGTATCTTCTCCGTTTATCTTCAAAACAAT
AGTGGTCTTCCCAGAATTATCAAGACCCACCCTAAGAATGCGCATTTCCT
TCTCTTTTTTCTTGATCTTCCTTA
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