CB291065

Overview
NameCB291065
Unique NameCB291065
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length916
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB291065 vs. ExPASy Swiss-Prot
Match: SPAST_DROPE (Spastin OS=Drosophila persimilis GN=spas PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 1.264e-29
Identity = 81/213 (38.03%), Postives = 123/213 (57.75%), Query Frame = -1
Query:  284 GEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLR-TKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDVD-LEGIANMADGYSGSDLKNLCVTAAHCPXXXXXXXXXXXXXXXXXENRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSESTNMNELLQWNELYGE 916
            GEK V+A+F++A  + PS++F+DEVDS+L  R + GEHEA R++K EF+V +DGL    D +R++VLAATNRP +LDEA +RR  +R+ V+LPD   RE ++  +L K+    D D L  ++ + DGYSGSDL  L   AA  P                  N           +R +   DF  + +++  SV+ +S ++ E  +W+  YG+
Sbjct:  590 GEKLVRALFAVARHLQPSIIFIDEVDSLLSERSS-GEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAALRRFTKRVYVSLPDEQTRELLLNRLLQKQGSPLDTDALRRLSKITDGYSGSDLTALAKDAALEP--------------IRELNVEQVKCLDINAMRHITEKDFHNSLKRIRRSVAPQSLSLYE--KWSSDYGD 785          
BLAST of CB291065 vs. ExPASy Swiss-Prot
Match: SPAST_DROMO (Spastin OS=Drosophila mojavensis GN=spas PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 1.264e-29
Identity = 82/215 (38.14%), Postives = 125/215 (58.14%), Query Frame = -1
Query:  284 GEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLR-TKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMA---DGYSGSDLKNLCVTAAHCPXXXXXXXXXXXXXXXXXENRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSESTNMNELLQWNELYGE 916
            GEK V+A+F++A  + PS++F+DEVDS+L  R +  EHEA R++K EF+V +DGL    + +R++VLAATNRP +LDEA +RR  +R+ V+LP+   RE ++  +L K+   S +D E +A +A   DGYSGSDL  L   AA  P                  N           +RP+   DF  + +++  SV+ +S N  E  +W++ YG+
Sbjct:  567 GEKLVRALFAVARHLQPSIIFIDEVDSLLSERSS-NEHEASRRLKTEFLVEFDGLPGNPEGDRIVVLAATNRPQELDEAALRRFTKRVYVSLPEVQTRELLLSRLLQKQ--GSPLDTEALARLAKITDGYSGSDLTALAKDAALEP--------------IRELNVEQVKCLDISAMRPITEKDFHNSLKRIRRSVAPQSLNSYE--KWSQDYGD 762          
BLAST of CB291065 vs. ExPASy Swiss-Prot
Match: SPAST_DROYA (Spastin OS=Drosophila yakuba GN=spas PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.650e-29
Identity = 81/213 (38.03%), Postives = 122/213 (57.28%), Query Frame = -1
Query:  284 GEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLR-TKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDVD-LEGIANMADGYSGSDLKNLCVTAAHCPXXXXXXXXXXXXXXXXXENRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSESTNMNELLQWNELYGE 916
            GEK V+A+F++A  + PS++F+DEVDS+L  R +  EHEA R++K EF+V +DGL    D +R++VLAATNRP +LDEA +RR  +R+ V+LPD   RE ++  +L K+    D + L  +A + DGYSGSDL  L   AA  P                  N           +R +   DF  + +++  SV+ +S N  E  +W++ YG+
Sbjct:  560 GEKLVRALFAVARHMQPSIIFIDEVDSLLSERSS-SEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAALRRFTKRVYVSLPDEQTRELLLNRLLQKQGSPLDTEALRRLAKITDGYSGSDLTALAKDAALEP--------------IRELNVEQVKCLDISAMRAITEQDFHSSLKRIRRSVAPQSLNSYE--KWSQDYGD 755          
BLAST of CB291065 vs. ExPASy Swiss-Prot
Match: SPAST_DROSE (Spastin OS=Drosophila sechellia GN=spas PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.650e-29
Identity = 81/213 (38.03%), Postives = 122/213 (57.28%), Query Frame = -1
Query:  284 GEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLR-TKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDVD-LEGIANMADGYSGSDLKNLCVTAAHCPXXXXXXXXXXXXXXXXXENRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSESTNMNELLQWNELYGE 916
            GEK V+A+F++A  + PS++F+DEVDS+L  R +  EHEA R++K EF+V +DGL    D +R++VLAATNRP +LDEA +RR  +R+ V+LPD   RE ++  +L K+    D + L  +A + DGYSGSDL  L   AA  P                  N           +R +   DF  + +++  SV+ +S N  E  +W++ YG+
Sbjct:  560 GEKLVRALFAVARHMQPSIIFIDEVDSLLSERSS-SEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAALRRFTKRVYVSLPDEQTRELLLNRLLQKQGSPLDTEALRRLAKITDGYSGSDLTALAKDAALEP--------------IRELNVEQVKCLDISAMRAITEQDFHSSLKRIRRSVAPQSLNSYE--KWSQDYGD 755          
BLAST of CB291065 vs. ExPASy Swiss-Prot
Match: SPAST_DROPS (Spastin OS=Drosophila pseudoobscura pseudoobscura GN=spas PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.650e-29
Identity = 69/141 (48.94%), Postives = 98/141 (69.50%), Query Frame = -1
Query:  500 GEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLR-TKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDVD-LEGIANMADGYSGSDLKNLCVTAA 916
            GEK V+A+F++A  + PS++F+DEVDS+L  R + GEHEA R++K EF+V +DGL    D +R++VLAATNRP +LDEA +RR  +R+ V+LPD   RE ++  +L K+    D D L  ++ + DGYSGSDL  L   AA
Sbjct:  590 GEKLVRALFAVARHLQPSIIFIDEVDSLLSERSS-GEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAALRRFTKRVYVSLPDEQTRELLLNRLLQKQGSPLDTDALRRLSKITDGYSGSDLTALAKDAA 729          
BLAST of CB291065 vs. ExPASy Swiss-Prot
Match: SPAST_DROME (Spastin OS=Drosophila melanogaster GN=spas PE=1 SV=2)

HSP 1 Score: 130.183 bits (326), Expect = 1.650e-29
Identity = 81/213 (38.03%), Postives = 122/213 (57.28%), Query Frame = -1
Query:  284 GEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLR-TKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDVD-LEGIANMADGYSGSDLKNLCVTAAHCPXXXXXXXXXXXXXXXXXENRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSESTNMNELLQWNELYGE 916
            GEK V+A+F++A  + PS++F+DEVDS+L  R +  EHEA R++K EF+V +DGL    D +R++VLAATNRP +LDEA +RR  +R+ V+LPD   RE ++  +L K+    D + L  +A + DGYSGSDL  L   AA  P                  N           +R +   DF  + +++  SV+ +S N  E  +W++ YG+
Sbjct:  560 GEKLVRALFAVARHMQPSIIFIDEVDSLLSERSS-SEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAALRRFTKRVYVSLPDEQTRELLLNRLLQKQGSPLDTEALRRLAKITDGYSGSDLTALAKDAALEP--------------IRELNVEQVKCLDISAMRAITEQDFHSSLKRIRRSVAPQSLNSYE--KWSQDYGD 755          
BLAST of CB291065 vs. ExPASy Swiss-Prot
Match: SPAST_DROER (Spastin OS=Drosophila erecta GN=spas PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.650e-29
Identity = 81/213 (38.03%), Postives = 122/213 (57.28%), Query Frame = -1
Query:  284 GEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLR-TKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDVD-LEGIANMADGYSGSDLKNLCVTAAHCPXXXXXXXXXXXXXXXXXENRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSESTNMNELLQWNELYGE 916
            GEK V+A+F++A  + PS++F+DEVDS+L  R +  EHEA R++K EF+V +DGL    D +R++VLAATNRP +LDEA +RR  +R+ V+LPD   RE ++  +L K+    D + L  +A + DGYSGSDL  L   AA  P                  N           +R +   DF  + +++  SV+ +S N  E  +W++ YG+
Sbjct:  560 GEKLVRALFAVARHMQPSIIFIDEVDSLLSERSS-SEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAALRRFTKRVYVSLPDEQTRELLLNRLLQKQGSPLDTEALRRLAKITDGYSGSDLTALAKDAALEP--------------IRELNVEQVKCLDISAMRAITEQDFHSSLKRIRRSVAPQSLNSYE--KWSQDYGD 755          
BLAST of CB291065 vs. ExPASy Swiss-Prot
Match: FIGL1_DROME (Fidgetin-like protein 1 OS=Drosophila melanogaster GN=CG3326 PE=2 SV=2)

HSP 1 Score: 129.798 bits (325), Expect = 2.155e-29
Identity = 81/213 (38.03%), Postives = 120/213 (56.34%), Query Frame = -1
Query:  287 EKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDV-DLEGIANMADGYSGSDLKNLCVTAAHCPXXXXXXXXXXXXXXXXXENRASPPLYSSVDVRPL---KMDDFKYAHEQVCASVSSESTNMNELLQWNELYG 913
            EK VK +F++A+   P+++F+DEVDS+L +R +  E+E+  ++KNEF+++ DG  + ++ RVLV+ ATNRP +LDEAV RR  RRL V LP    R+KII  ++ + +   DV  +  +A + DGYSG+D+  LC  A+  P                     +P     ++   L    MDDFK A   +  SVSSE     E   WNE+YG
Sbjct:  328 EKLVKTLFAVAAAHQPAIIFIDEVDSLLSKR-SANENESTLRLKNEFLIHLDGAASNEEIRVLVIGATNRPQELDEAVRRRFVRRLYVPLPTREARQKIIEKLIHQVKHNLDVRQVIELAELTDGYSGADVDTLCRYASMAP-----------------LRSLTPDQMEVIETHQLPAVTMDDFKQALRVISKSVSSEDCKQFE--AWNEIYG 520          
BLAST of CB291065 vs. ExPASy Swiss-Prot
Match: SPAST_DROGR (Spastin OS=Drosophila grimshawi GN=spas PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 2.815e-29
Identity = 81/213 (38.03%), Postives = 122/213 (57.28%), Query Frame = -1
Query:  284 GEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLR-TKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEG-IANMADGYSGSDLKNLCVTAAHCPXXXXXXXXXXXXXXXXXENRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSESTNMNELLQWNELYGE 916
            GEK V+A+F++A  + PS++F+DEVDS+L  R +  EHEA R++K EF+V +DGL    D +R++VLAATNRP +LDEA +RR  +R+ V+LPD   RE ++  +L K+    D D  G +A + +GYSGSDL  L   AA  P                  N           +R +   DF  + +++  SV+ +S N  E  +W++ YG+
Sbjct:  584 GEKLVRALFAVARHMQPSIIFIDEVDSLLSERSS-NEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAALRRFTKRVYVSLPDVQTRELLLNRLLQKQGSPLDSDALGRLAKITEGYSGSDLTALAKDAALEP--------------IRELNVEQVKCLDISAMRQITEKDFHNSLKRIRRSVAPQSLNSYE--KWSQDYGD 779          
BLAST of CB291065 vs. ExPASy Swiss-Prot
Match: SPAST_DROVI (Spastin OS=Drosophila virilis GN=spas PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 3.676e-29
Identity = 82/215 (38.14%), Postives = 124/215 (57.67%), Query Frame = -1
Query:  284 GEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLR-TKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMA---DGYSGSDLKNLCVTAAHCPXXXXXXXXXXXXXXXXXENRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSESTNMNELLQWNELYGE 916
            GEK V+A+F++A  + PS++F+DEVDS+L  R +  EHEA R++K EF+V +DGL    + +R++VLAATNRP +LDEA +RR  +R+ V+LP    RE ++  +L K+   S +D E +A +A   DGYSGSDL  L   AA  P                  N           +RP+   DF  + +++  SV+ +S N  E  +W++ YG+
Sbjct:  571 GEKLVRALFAVARHMQPSIIFIDEVDSLLSERSS-NEHEASRRLKTEFLVEFDGLPGNPEGDRIVVLAATNRPQELDEAALRRFTKRVYVSLPGVQTRELLLSRLLQKQ--GSPLDTEALARLAKITDGYSGSDLTALAKDAALEP--------------IRELNVEQVKCLDISAMRPITEKDFHNSLKRIRRSVAPQSLNSYE--KWSQDYGD 766          
The following BLAST results are available for this feature:
BLAST of CB291065 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 300
Match NameE-valueIdentityDescription
SPAST_DROPE1.264e-2938.03Spastin OS=Drosophila persimilis GN=spas PE=3 SV=1[more]
SPAST_DROMO1.264e-2938.14Spastin OS=Drosophila mojavensis GN=spas PE=3 SV=1[more]
SPAST_DROYA1.650e-2938.03Spastin OS=Drosophila yakuba GN=spas PE=3 SV=1[more]
SPAST_DROSE1.650e-2938.03Spastin OS=Drosophila sechellia GN=spas PE=3 SV=1[more]
SPAST_DROPS1.650e-2948.94Spastin OS=Drosophila pseudoobscura pseudoobscura ... [more]
SPAST_DROME1.650e-2938.03Spastin OS=Drosophila melanogaster GN=spas PE=1 SV... [more]
SPAST_DROER1.650e-2938.03Spastin OS=Drosophila erecta GN=spas PE=3 SV=1[more]
FIGL1_DROME2.155e-2938.03Fidgetin-like protein 1 OS=Drosophila melanogaster... [more]
SPAST_DROGR2.815e-2938.03Spastin OS=Drosophila grimshawi GN=spas PE=3 SV=1[more]
SPAST_DROVI3.676e-2938.14Spastin OS=Drosophila virilis GN=spas PE=3 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_02bc03_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_02bc03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB291065 ID=CB291065; Name=CB291065; organism=Citrus sinensis; type=EST; length=916bp
TTTTTTTTTTTTTTTTTAACGAAGGAAAATAACACTTTTGATTTAAGTTA
ACCTGCTTGATGAATATAAAAAAGAATTCCTAACAAAAGGGTAAAAGCTT
CCAAAACCTATATATATTACAATGAAAAAGGGACAGCCCAACAGAATTCT
CCATAAATACAGGTCCCTGATCTTGGCCATCATTTAGGATGATAAAGACG
AATAAACCACACAAGAATGCTATACAAAAGAGATACCACCTCTACATAAA
GTAGCTCAGAGATTTCCTTTTCCTCGATCCACCTTCTCCATATAGTTCAT
TCCATTGAAGGAGCTCATTCATATTTGTAGACTCTGATGATACACTTGCA
CACACCTGCTCATGTGCATATTTGAAATCGTCCATCTTCAGAGGGCGAAC
GTCGACGCTGCTGTACAATGGAGGTGAAGCTCTATTCTCGGCCAATGCTA
AAGCTCTCTCCTTCTTTTCCTTCTCCAAAATTTCTCGTATGGGACAATGT
GCGGCAGTCACACACAGGTTCTTTAGATCACTTCCAGAGTACCCATCAGC
CATGTTTGCAATTCCTTCCAAATCCACATCAGATGCCAATTCTTCTTTGG
CCAAGATAACTCTTATAATCTTTTCTCTGTTTGGGGCATCTGGCAAGTTA
ACCATCAATCTCCTTGGAAGCCTCCTAACAACAGCCTCATCAAGGTCAAA
AGGCCTATTGGTAGCAGCAAGTACCAGAACTCGTTCTTTATCCTTTGTGC
GCAAACCATCCCAGTTAACCATGAATTCGTTCTTCATTTTACGCATAGCT
TCATGCTCTCCTGGATTTTCCCGTCTTCCTAACATGCTGTCAACCTCATC
AACAAAAACAACACTTGGAGCAATTTTACTGGCCAGAGAGAAGACTGCTT
TAACATACTTCTCTCC
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