CB291065

Overview
NameCB291065
Unique NameCB291065
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length916
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB291065 vs. ExPASy Swiss-Prot
Match: KATL2_HUMAN (Katanin p60 ATPase-containing subunit A-like 2 OS=Homo sapiens GN=KATNAL2 PE=2 SV=3)

HSP 1 Score: 98.9821 bits (245), Expect = 4.074e-20
Identity = 58/149 (38.93%), Postives = 93/149 (62.42%), Query Frame = -1
Query:  491 EKYVKAVFSLASKIAPSVVFVDEVDSMLGRR--ENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKE------ELASDVDLEGIANMADGYSGSDLKNLCVTAAHCP 913
            EK V+ +F LA   APS +F+DE++S++ +R   + GEHE   +MK E +V  DGL  + ++ V VLAA+N P++LD A++RRL +R++V+LP    R+ +I   L         EL ++++   ++   +GYSGSD+K +C  AA  P
Sbjct:  332 EKLVRVLFELARYHAPSTIFLDELESVMSQRGTASGGEHEGSLRMKTELLVQMDGL-ARSEDLVFVLAASNLPWELDCAMLRRLEKRILVDLPSREARQAMIYHWLPPVSKSRALELHTELEYSVLSQETEGYSGSDIKLVCREAAMRP 479          
BLAST of CB291065 vs. ExPASy Swiss-Prot
Match: CDCH_HALSA (Protein cdcH OS=Halobacterium salinarium GN=cdcH PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.548e-19
Identity = 54/140 (38.57%), Postives = 82/140 (58.57%), Query Frame = -1
Query:  500 EKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAA 913
            EK ++  F  A ++AP+V+F DE+DS+   R   G +    ++ N+ +   DGL  ++ E V+V+AATNRP  +D A++R  R  R + V  P    RE+I+++      LA+DV L  +A  ADGY GSDL N+   AA
Sbjct:  541 EKAIRQTFRKARQVAPTVIFFDELDSLAPGRGQTGGNNVSERVVNQLLTELDGL--EEMEEVMVIAATNRPDIIDPALIRSGRFDRLVQVGQPGIEGREQILKIHTQDTPLAADVSLRELAERADGYVGSDLANIAREAA 678          

HSP 2 Score: 77.0258 bits (188), Expect = 1.658e-13
Identity = 61/212 (28.77%), Postives = 109/212 (51.42%), Query Frame = -1
Query:  287 EKYVKAVFSLASKIAPSVVFVDEVDSMLGRREN-PGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPXXXXXXXXXXXXXXXXXENRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSESTNMNELLQWNELYG 913
            E+ ++ +F  A   +PS++F+DE+DS+  +RE+  GE E  R++  + +   DGL  + + +V+V+AATNR   +D A+ R  R  R + + +PD   RE+I+++      L+ DV+L  +A+   G+ G+D+++L   AA                    +    PP  S +D   +K +DFK A  +V  S   E       + W+++ G
Sbjct:  268 EQQLREIFEDAKDDSPSIIFIDELDSIAPKREDVTGEVE--RRVVAQLLTMMDGL--EGRGQVIVIAATNRVDAVDPALRRPGRFDREIEIGVPDEIGREEILKIHTRGMPLSDDVNLSTLADDTHGFVGADIESLSKEAA-------MRALRRYLPEIDLDEEDIPP--SLIDRMIVKREDFKGALSEVEPSAMREVLVELPKITWDDVGG 466          
BLAST of CB291065 vs. ExPASy Swiss-Prot
Match: VPS4B_MOUSE (Vacuolar protein sorting-associated protein 4B OS=Mus musculus GN=Vps4b PE=1 SV=2)

HSP 1 Score: 96.6709 bits (239), Expect = 2.022e-19
Identity = 52/131 (39.69%), Postives = 81/131 (61.83%), Query Frame = -1
Query:  524 EKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVIL-AKEELASDVDLEGIANMADGYSGSDL 913
            EK VK +F LA +  PS++F+DE+DS+ G R    E EA R++K EF+V   G+   D + +LVL ATN P+ LD A+ RR  +R+ + LP+A  R  + R+ L + +   ++ D + +    DGYSG+D+
Sbjct:  213 EKLVKNLFQLARENKPSIIFIDEIDSLCGSRSE-NESEAARRIKTEFLVQMQGVGV-DNDGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGSTQNSLTEADFQELGRKTDGYSGADI 341          
BLAST of CB291065 vs. ExPASy Swiss-Prot
Match: KATL2_MOUSE (Katanin p60 ATPase-containing subunit A-like 2 OS=Mus musculus GN=Katnal2 PE=2 SV=2)

HSP 1 Score: 96.6709 bits (239), Expect = 2.022e-19
Identity = 58/149 (38.93%), Postives = 91/149 (61.07%), Query Frame = -1
Query:  491 EKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENP--GEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKE------ELASDVDLEGIANMADGYSGSDLKNLCVTAAHCP 913
            EK V+ +F LA   APS +F+DE++S++ +R     GEHE   +MK E +V  DGL  + ++ V VLAA+N P++LD A++RRL +R++V+LP    R+ +I   L         EL + ++   ++   +GYSGSD+K +C  AA  P
Sbjct:  333 EKLVRVLFELARYHAPSTIFLDELESVMSQRGMVPGGEHEGSLRMKTELLVQMDGL-ARSEDLVFVLAASNLPWELDCAMLRRLEKRILVDLPSQEARQAMIYHWLPPVSKNHALELHTQLEYSVLSQETEGYSGSDIKLVCREAAMRP 480          
BLAST of CB291065 vs. ExPASy Swiss-Prot
Match: FTSH4_ARATH (Cell division protease ftsH homolog 4, mitochondrial OS=Arabidopsis thaliana GN=FTSH4 PE=1 SV=2)

HSP 1 Score: 96.2857 bits (238), Expect = 2.641e-19
Identity = 57/141 (40.43%), Postives = 85/141 (60.28%), Query Frame = -1
Query:  500 GEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAA 916
            G + V+ +FS A K +P ++F+DE+D++ G R NP + + M+   N+ +V  DG   K  E ++V+AATN P  LD+A+VR  R  R ++V  PD   R +I+   ++K   A DVDL  IA    G+SG+DL NL   AA
Sbjct:  304 GARRVRDLFSAAKKCSPCIIFIDEIDAIGGSR-NPKDQQYMKMTLNQMLVELDGF--KQNEGIIVVAATNFPESLDKALVRPGRFDRHIVVPNPDVEGRRQILESHMSKVLKAEDVDLMIIARGTPGFSGADLANLVNVAA 441          
BLAST of CB291065 vs. ExPASy Swiss-Prot
Match: Y1297_ARCFU (Cell division cycle protein 48 homolog AF_1297 OS=Archaeoglobus fulgidus GN=AF_1297 PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 4.504e-19
Identity = 50/136 (36.76%), Postives = 86/136 (63.24%), Query Frame = -1
Query:  512 EKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLC 913
            EK+V+ +F  A ++AP V+F DE+DS+  RR   G+     ++ ++ +   DGL  ++ + V+V+AATNRP  +D A++R  RL R + +  PD   R +I ++ L  + LA DV++E +A   +GYSG+D++ +C
Sbjct:  534 EKHVREMFRKARQVAPCVIFFDEIDSLAPRRGGIGDSHVTERVVSQLLTELDGL--EELKDVVVIAATNRPDMIDPALLRPGRLERHIYIPPPDKKARVEIFKIHLRGKPLADDVNIEELAEKTEGYSGADIEAVC 667          

HSP 2 Score: 92.8189 bits (229), Expect = 2.920e-18
Identity = 54/141 (38.30%), Postives = 87/141 (61.70%), Query Frame = -1
Query:  500 EKYVKAVFSLASKIAPSVVFVDEVDSMLGRREN-PGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAA 913
            E+ ++ +F  A + APS++F+DE+DS+  +RE   GE E  R++  + +   DGL  +    V+V+AATNRP  +D A+ R  R  R + + +PD   R++I+ +   K  LA DVDLE +A + +G+ G+DL+ LC  AA
Sbjct:  261 EQRLREIFEEAKENAPSIIFIDEIDSIAPKREEVTGEVE--RRVVAQLLALMDGLEARGD--VIVIAATNRPDAIDPALRRPGRFDREIEIGVPDKEGRKEILEIHTRKMPLAEDVDLEELAELTNGFVGADLEALCKEAA 397          
BLAST of CB291065 vs. ExPASy Swiss-Prot
Match: FTSH_SALTY (Cell division protease ftsH OS=Salmonella typhimurium GN=ftsH PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 5.883e-19
Identity = 56/144 (38.89%), Postives = 87/144 (60.42%), Query Frame = -1
Query:  500 GEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPG---EHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAA 916
            G   V+ +F  A K AP ++F+DE+D++ GR+   G    H+   +  N+ +V  DG   +  E ++V+AATNRP  LD A++R  R  R+++V LPD   RE+I++V + +  LA+D+D   IA    G+SG+DL NL   AA
Sbjct:  229 GASRVRDMFEQAKKAAPCIIFIDEIDAV-GRQRGAGLGGGHDEREQTLNQMLVEMDGF--EGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLATDIDAAIIARGTPGFSGADLANLVNEAA 369          
BLAST of CB291065 vs. ExPASy Swiss-Prot
Match: FTSH_SALTI (Cell division protease ftsH OS=Salmonella typhi GN=ftsH PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 5.883e-19
Identity = 56/144 (38.89%), Postives = 87/144 (60.42%), Query Frame = -1
Query:  500 GEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPG---EHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAA 916
            G   V+ +F  A K AP ++F+DE+D++ GR+   G    H+   +  N+ +V  DG   +  E ++V+AATNRP  LD A++R  R  R+++V LPD   RE+I++V + +  LA+D+D   IA    G+SG+DL NL   AA
Sbjct:  229 GASRVRDMFEQAKKAAPCIIFIDEIDAV-GRQRGAGLGGGHDEREQTLNQMLVEMDGF--EGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLATDIDAAIIARGTPGFSGADLANLVNEAA 369          
BLAST of CB291065 vs. ExPASy Swiss-Prot
Match: FTSH1_HAEIN (Cell division protease ftsH homolog 1 OS=Haemophilus influenzae GN=ftsH-A PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 7.683e-19
Identity = 58/144 (40.28%), Postives = 84/144 (58.33%), Query Frame = -1
Query:  500 GEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPG---EHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAA 916
            G   V+ +F  A K AP ++F+DE+D++ GR+   G    H+   +  N+ +V  DG    D   V+V+AATNRP  LD A+ R  R  R+++V LPD   RE+I++V + K  +A DVD   +A    GYSG+DL NL   AA
Sbjct:  228 GASRVRDMFEQAKKNAPCLIFIDEIDAV-GRQRGAGLGGGHDEREQTLNQMLVEMDGFSGNDG--VIVIAATNRPDVLDPALTRPGRFDRQVVVGLPDVKGREQILKVHMRKVSVAQDVDAMTLARGTPGYSGADLANLVNEAA 368          
BLAST of CB291065 vs. ExPASy Swiss-Prot
Match: FTSH_SHIFL (Cell division protease ftsH OS=Shigella flexneri GN=ftsH PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 1.003e-18
Identity = 56/144 (38.89%), Postives = 86/144 (59.72%), Query Frame = -1
Query:  500 GEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPG---EHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAA 916
            G   V+ +F  A K AP ++F+DE+D++ GR+   G    H+   +  N+ +V  DG   +  E ++V+AATNRP  LD A++R  R  R+++V LPD   RE+I++V + +  LA D+D   IA    G+SG+DL NL   AA
Sbjct:  229 GASRVRDMFEQAKKAAPCIIFIDEIDAV-GRQRGAGLGGGHDEREQTLNQMLVEMDGF--EGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNEAA 369          
The following BLAST results are available for this feature:
BLAST of CB291065 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 300
Match NameE-valueIdentityDescription
KATL2_HUMAN4.074e-2038.93Katanin p60 ATPase-containing subunit A-like 2 OS=... [more]
CDCH_HALSA1.548e-1938.57Protein cdcH OS=Halobacterium salinarium GN=cdcH P... [more]
VPS4B_MOUSE2.022e-1939.69Vacuolar protein sorting-associated protein 4B OS=... [more]
KATL2_MOUSE2.022e-1938.93Katanin p60 ATPase-containing subunit A-like 2 OS=... [more]
FTSH4_ARATH2.641e-1940.43Cell division protease ftsH homolog 4, mitochondri... [more]
Y1297_ARCFU4.504e-1936.76Cell division cycle protein 48 homolog AF_1297 OS=... [more]
FTSH_SALTY5.883e-1938.89Cell division protease ftsH OS=Salmonella typhimur... [more]
FTSH_SALTI5.883e-1938.89Cell division protease ftsH OS=Salmonella typhi GN... [more]
FTSH1_HAEIN7.683e-1940.28Cell division protease ftsH homolog 1 OS=Haemophil... [more]
FTSH_SHIFL1.003e-1838.89Cell division protease ftsH OS=Shigella flexneri G... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_02bc03_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_02bc03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB291065 ID=CB291065; Name=CB291065; organism=Citrus sinensis; type=EST; length=916bp
TTTTTTTTTTTTTTTTTAACGAAGGAAAATAACACTTTTGATTTAAGTTA
ACCTGCTTGATGAATATAAAAAAGAATTCCTAACAAAAGGGTAAAAGCTT
CCAAAACCTATATATATTACAATGAAAAAGGGACAGCCCAACAGAATTCT
CCATAAATACAGGTCCCTGATCTTGGCCATCATTTAGGATGATAAAGACG
AATAAACCACACAAGAATGCTATACAAAAGAGATACCACCTCTACATAAA
GTAGCTCAGAGATTTCCTTTTCCTCGATCCACCTTCTCCATATAGTTCAT
TCCATTGAAGGAGCTCATTCATATTTGTAGACTCTGATGATACACTTGCA
CACACCTGCTCATGTGCATATTTGAAATCGTCCATCTTCAGAGGGCGAAC
GTCGACGCTGCTGTACAATGGAGGTGAAGCTCTATTCTCGGCCAATGCTA
AAGCTCTCTCCTTCTTTTCCTTCTCCAAAATTTCTCGTATGGGACAATGT
GCGGCAGTCACACACAGGTTCTTTAGATCACTTCCAGAGTACCCATCAGC
CATGTTTGCAATTCCTTCCAAATCCACATCAGATGCCAATTCTTCTTTGG
CCAAGATAACTCTTATAATCTTTTCTCTGTTTGGGGCATCTGGCAAGTTA
ACCATCAATCTCCTTGGAAGCCTCCTAACAACAGCCTCATCAAGGTCAAA
AGGCCTATTGGTAGCAGCAAGTACCAGAACTCGTTCTTTATCCTTTGTGC
GCAAACCATCCCAGTTAACCATGAATTCGTTCTTCATTTTACGCATAGCT
TCATGCTCTCCTGGATTTTCCCGTCTTCCTAACATGCTGTCAACCTCATC
AACAAAAACAACACTTGGAGCAATTTTACTGGCCAGAGAGAAGACTGCTT
TAACATACTTCTCTCC
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