CB291101

Overview
NameCB291101
Unique NameCB291101
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length852
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB291101 vs. ExPASy Swiss-Prot
Match: GDIB_RAT (Rab GDP dissociation inhibitor beta OS=Rattus norvegicus GN=Gdi2 PE=1 SV=2)

HSP 1 Score: 191.43 bits (485), Expect = 5.329e-48
Identity = 90/179 (50.28%), Postives = 131/179 (73.18%), Query Frame = -3
Query:  314 YMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPNKVRKVGRVARAIAIMSHPIPNTNDSHSVQVILPQKQLGRRSDMYLFCCSYSHNVAPKGKFIAFVSTEAETDHPQTELKPGIDLLGPVDEIFYDIYDRYEPVNEPSLDNCFISTSYDATTHFESTVTDVLNMYTMITG 850
            YMLNKP  ++   + GKVVGV SEGE A+CK+++CDPSY+ ++V KVG+V R I I+SHPI NTND++S Q+I+PQ Q+ R+SD+Y+   S++HNVA +GK+IA VST  ET  P+ E++P ++LL P+++ F  I D + P +  +    FIS +YDATTHFE+T  D+ ++Y  +TG
Sbjct:  249 YMLNKPIEEI-IVQNGKVVGVKSEGEIARCKQLICDPSYVKDRVEKVGQVIRVICILSHPIKNTNDANSCQIIIPQNQVNRKSDIYVCMISFAHNVAAQGKYIAIVSTTVETKEPEKEIRPALELLEPIEQKFVSISDLFVPKDLGTDSQIFISRAYDATTHFETTCDDIKDIYKRMTG 426          
BLAST of CB291101 vs. ExPASy Swiss-Prot
Match: GDIB_MOUSE (Rab GDP dissociation inhibitor beta OS=Mus musculus GN=Gdi2 PE=1 SV=1)

HSP 1 Score: 191.43 bits (485), Expect = 5.329e-48
Identity = 90/179 (50.28%), Postives = 131/179 (73.18%), Query Frame = -3
Query:  314 YMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPNKVRKVGRVARAIAIMSHPIPNTNDSHSVQVILPQKQLGRRSDMYLFCCSYSHNVAPKGKFIAFVSTEAETDHPQTELKPGIDLLGPVDEIFYDIYDRYEPVNEPSLDNCFISTSYDATTHFESTVTDVLNMYTMITG 850
            YMLNKP  ++   + GKVVGV SEGE A+CK+++CDPSY+ ++V KVG+V R I I+SHPI NTND++S Q+I+PQ Q+ R+SD+Y+   S++HNVA +GK+IA VST  ET  P+ E++P ++LL P+++ F  I D + P +  +    FIS +YDATTHFE+T  D+ ++Y  +TG
Sbjct:  249 YMLNKPIEEI-IVQNGKVVGVKSEGEIARCKQLICDPSYVKDRVEKVGQVIRVICILSHPIKNTNDANSCQIIIPQNQVNRKSDIYVCMISFAHNVAAQGKYIAIVSTTVETKEPEKEIRPALELLEPIEQKFVSISDLFVPKDLGTDSQIFISRAYDATTHFETTCDDIKDIYKRMTG 426          
BLAST of CB291101 vs. ExPASy Swiss-Prot
Match: GDIB_PONAB (Rab GDP dissociation inhibitor beta OS=Pongo abelii GN=GDI2 PE=2 SV=1)

HSP 1 Score: 190.66 bits (483), Expect = 9.091e-48
Identity = 90/179 (50.28%), Postives = 130/179 (72.63%), Query Frame = -3
Query:  314 YMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPNKVRKVGRVARAIAIMSHPIPNTNDSHSVQVILPQKQLGRRSDMYLFCCSYSHNVAPKGKFIAFVSTEAETDHPQTELKPGIDLLGPVDEIFYDIYDRYEPVNEPSLDNCFISTSYDATTHFESTVTDVLNMYTMITG 850
            YMLNKP  ++   + GKV+GV SEGE A+CK+++CDPSY+ ++V KVG+V R I I+SHPI NTND++S Q+I+PQ Q+ R+SD+Y+   S++HNVA +GK+IA VST  ET  P+ E++P ++LL P+++ F  I D   P +  +    FIS +YDATTHFE+T  D+ N+Y  +TG
Sbjct:  249 YMLNKPIEEI-IVQNGKVIGVKSEGEIARCKQLICDPSYVKDRVEKVGQVIRVICILSHPIKNTNDANSCQIIIPQNQVNRKSDIYVCMISFAHNVAAQGKYIAIVSTTVETKEPEKEIRPALELLEPIEQKFVSISDLLVPKDLGTESLIFISRTYDATTHFETTCDDIKNIYKRMTG 426          
BLAST of CB291101 vs. ExPASy Swiss-Prot
Match: GDIB_BOVIN (Rab GDP dissociation inhibitor beta OS=Bos taurus GN=GDI2 PE=2 SV=3)

HSP 1 Score: 184.111 bits (466), Expect = 8.509e-46
Identity = 87/179 (48.60%), Postives = 127/179 (70.95%), Query Frame = -3
Query:  314 YMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPNKVRKVGRVARAIAIMSHPIPNTNDSHSVQVILPQKQLGRRSDMYLFCCSYSHNVAPKGKFIAFVSTEAETDHPQTELKPGIDLLGPVDEIFYDIYDRYEPVNEPSLDNCFISTSYDATTHFESTVTDVLNMYTMITG 850
            YMLNKP  ++   + GKV+GV SEGE A+CK+++CDPSY+ ++V KVG+V R I I+SHPI NTND++S Q+I+PQ Q+ R+SD+Y+   S +HNVA +GK+IA  ST  ET  P+ E++P ++LL P+++ F  I D   P +  +    FIS +YDATTHFE+T  D+ ++Y  + G
Sbjct:  249 YMLNKPIEEIIM-QNGKVIGVKSEGEIARCKQLICDPSYVKDRVEKVGQVIRVICILSHPIKNTNDANSCQIIIPQNQVNRKSDIYVCMISSAHNVAAQGKYIAIASTTVETKEPEKEIRPALELLEPIEQKFVSISDLLVPKDLGTESQIFISRTYDATTHFETTCDDIKDIYKRMMG 426          
BLAST of CB291101 vs. ExPASy Swiss-Prot
Match: GDIB_PIG (Rab GDP dissociation inhibitor beta OS=Sus scrofa GN=GDI2 PE=2 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 1.111e-45
Identity = 87/179 (48.60%), Postives = 128/179 (71.51%), Query Frame = -3
Query:  314 YMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPNKVRKVGRVARAIAIMSHPIPNTNDSHSVQVILPQKQLGRRSDMYLFCCSYSHNVAPKGKFIAFVSTEAETDHPQTELKPGIDLLGPVDEIFYDIYDRYEPVNEPSLDNCFISTSYDATTHFESTVTDVLNMYTMITG 850
            YMLNKP  ++   + GKV+GV SEGE A+CK+++CDPSY+ ++V KVG+V R I I+SHPI NT+D++S Q+I+PQ Q+ R+SD+Y+   S +HNVA +GK+IA  ST  ET  P+ E++P ++LL P+++ F  I D   P +  +    FIS +YDATTHFE+T  D+ ++Y  +TG
Sbjct:  249 YMLNKPIEEI-IVQNGKVIGVKSEGEIARCKQLICDPSYVKDRVEKVGQVIRVICILSHPIKNTSDANSCQIIIPQNQVNRKSDIYVCMISSAHNVAAQGKYIAIASTTVETKEPEKEIRPALELLKPIEQKFVSISDLLVPKDLGTDSQIFISRTYDATTHFETTCGDIKDIYKRMTG 426          
BLAST of CB291101 vs. ExPASy Swiss-Prot
Match: GDI1_SCHPO (Probable secretory pathway GDP dissociation inhibitor 1 OS=Schizosaccharomyces pombe GN=gdi1 PE=2 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 7.203e-45
Identity = 85/179 (47.49%), Postives = 124/179 (69.27%), Query Frame = -3
Query:  314 YMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPNKVRKVGRVARAIAIMSHPIPNTNDSHSVQVILPQKQLGRRSDMYLFCCSYSHNVAPKGKFIAFVSTEAETDHPQTELKPGIDLLGPVDEIFYDIYDRYEPVNEPSLDNCFISTSYDATTHFESTVTDVLNMYTMITG 850
            YMLN+P  ++ + ++G  +GV S  + AK K+++ DPSY   KVR VGR+ RAI I++HPIPNT++  SVQ+I+PQ Q+ R+ D+Y+   S  HNV PKG ++A +ST  ET +P +E+ PG+ LLGPV E F  + + YEPV + + D C+IS S DAT+HFE+   DV ++Y  +TG
Sbjct:  248 YMLNQPVDEIVYGDDGVAIGVRSGDQVAKAKQIIGDPSYFREKVRSVGRLVRAICILNHPIPNTDNLDSVQIIIPQNQVKRKHDIYIAGISSVHNVCPKGYYLAIISTIVETANPLSEIAPGLKLLGPVVESFSRVQEIYEPVTDGTKDQCYISKSVDATSHFETLTCDVRDIYKRMTG 426          
BLAST of CB291101 vs. ExPASy Swiss-Prot
Match: GDI1_YEAST (Rab GDP-dissociation inhibitor OS=Saccharomyces cerevisiae GN=GDI1 PE=1 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 1.406e-40
Identity = 83/181 (45.86%), Postives = 122/181 (67.40%), Query Frame = -3
Query:  314 YMLNKPECKVEFDEE-GKVVGVTSEGETAKCKKVVCDPSYLPNKVRKVG-RVARAIAIMSHPIPNTNDSHSVQVILPQKQLGRRSDMYLFCCSYSHNVAPKGKFIAFVSTEAETDHPQTELKPGIDLLGPVDEIFYDIYDRYEPVNEPSLDNCFISTSYDATTHFESTVTDVLNMYTMITG 850
            YML+ P  +V + ++ GK  GV ++  T K   V+ DP+Y P K +  G RV RAI I++HP+PNT+++ S+Q+I+PQ QLGR+SD+Y+   S +HNV  KG ++A +ST  ETD P  EL+P   LLGP++E F  I + +EP  + S DN ++S SYDA++HFES   DV ++Y  +TG
Sbjct:  257 YMLDTPIDEVLYKKDTGKFEGVKTKLGTFKAPLVIADPTYFPEKCKSTGQRVIRAICILNHPVPNTSNADSLQIIIPQSQLGRKSDIYVAIVSDAHNVCSKGHYLAIISTIIETDKPHIELEPAFKLLGPIEEKFMGIAELFEPREDGSKDNIYLSRSYDASSHFESMTDDVKDIYFRVTG 437          
The following BLAST results are available for this feature:
BLAST of CB291101 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
GDIB_RAT5.329e-4850.28Rab GDP dissociation inhibitor beta OS=Rattus norv... [more]
GDIB_MOUSE5.329e-4850.28Rab GDP dissociation inhibitor beta OS=Mus musculu... [more]
GDIB_PONAB9.091e-4850.28Rab GDP dissociation inhibitor beta OS=Pongo abeli... [more]
GDIB_BOVIN8.509e-4648.60Rab GDP dissociation inhibitor beta OS=Bos taurus ... [more]
GDIB_PIG1.111e-4548.60Rab GDP dissociation inhibitor beta OS=Sus scrofa ... [more]
GDI1_SCHPO7.203e-4547.49Probable secretory pathway GDP dissociation inhibi... [more]
GDI1_YEAST1.406e-4045.86Rab GDP-dissociation inhibitor OS=Saccharomyces ce... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_02be03_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_02be03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB291101 ID=CB291101; Name=CB291101; organism=Citrus sinensis; type=EST; length=852bp
TTTTTTTTTTTTTTTAATCAAGCTGAAAAATTTAAGATATAATTTAAGCA
AATTAAAGATGCATGTTTGAAATCTACACATTAGTTCCCACGGCGAACAA
TTAAAACAAGATTCCATTACATAATAATAATAATAAAATCACCAACTATG
AGAAACAGAAACCATGACAAAGTCCAAGTGTCCAACCCCCACATTCTTTC
GAGCTTTATCCCACTGACGGCATTACATGCGCAAACATGAACGGGGAGTT
GCAGATTCCTCATTCTTCTGCAGCACTGGCAGCACTTAAATCCACACTGA
GGTCAAGAACCTTTCCGGTTATCATGGTATACATGTTCAGTACATCCGTG
ACAGTTGACTCAAAGTGTGTTGTGGCATCATAGCTCGTTGAGATAAAGCA
ATTGTCCAAAGAAGGTTCATTAACTGGTTCATATCTGTCATATATATCAT
AGAATATTTCATCGACTGGACCCAAAAGATCAATTCCAGGCTTAAGTTCA
GTCTGTGGATGATCAGTCTCTGCCTCAGTCGATACGAATGCAATGAATTT
GCCCTTTGGAGCAACATTGTGGGAGTAGGAACAACAGAAGAGGTACATGT
CTGATCTACGACCCAACTGTTTTTGCGGAAGGATAACCTGCACTGAATGG
GAATCATTGGTGTTTGGGATTGGGTGGCTCATAATAGCGATTGCCCTAGC
AACCCTGCCAACCTTCCTCACCTTGTTGGGCAAATAGGAAGGATCACAAA
CAACTTTCTTGCACTTTGCAGTTTCCCCTTCTGACGTGACACCGACTACT
TTACCTTCTTCATCAAACTCTACCTTGCACTCAGGTTTATTCAACATATA
CG
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