CB291108

Overview
NameCB291108
Unique NameCB291108
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length737
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB291108 vs. ExPASy Swiss-Prot
Match: YCF2E_CAEEL (Uncharacterized peptidase C1-like protein F26E4.3 OS=Caenorhabditis elegans GN=F26E4.3 PE=1 SV=3)

HSP 1 Score: 87.8113 bits (216), Expect = 6.565e-17
Identity = 43/112 (38.39%), Postives = 59/112 (52.68%), Query Frame = -3
Query:  313 YRINFDPEGIMAEIFKNGPVEVSFPVYEDFAPYKFGVY--------KPIPGDVMGGHAVKLIGWGTSDDGED---YWIFANQWNRSWGGDGFFKIKRGSNECGIEEDVVGGF 615
            Y+++   E I  E+  NGPV+ +F V+EDF  Y  GVY        K       G H+V+++GWG          YW+ AN W   WG DG+FK+ RG N C IE  V+G +
Sbjct:  318 YKVSSREEDIQTELMTNGPVQATFVVHEDFFMYAGGVYQHSDLAAQKGASSVAEGYHSVRVLGWGVDHSTGKPIKYWLCANSWGTQWGEDGYFKVLRGENHCEIESFVIGAW 429          
BLAST of CB291108 vs. ExPASy Swiss-Prot
Match: CATC_HUMAN (Dipeptidyl-peptidase 1 OS=Homo sapiens GN=CTSC PE=1 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 8.574e-17
Identity = 43/100 (43.00%), Postives = 58/100 (58.00%), Query Frame = -3
Query:  301 EIFKNGPVEVSFPVYEDFAPYKFGVYK------PIPGDVMGGHAVKLIGWGT-SDDGEDYWIFANQWNRSWGGDGFFKIKRGSNECGIEEDVVGGFPSSK 579
            E+  +GP+ V+F VY+DF  YK G+Y       P     +  HAV L+G+GT S  G DYWI  N W   WG +G+F+I+RG++EC IE   V   P  K
Sbjct:  363 ELVHHGPMAVAFEVYDDFLHYKKGIYHHTGLRDPFNPFELTNHAVLLVGYGTDSASGMDYWIVKNSWGTGWGENGYFRIRRGTDECAIESIAVAATPIPK 462          
BLAST of CB291108 vs. ExPASy Swiss-Prot
Match: TINAL_RAT (Tubulointerstitial nephritis antigen-like OS=Rattus norvegicus GN=Tinagl1 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.258e-16
Identity = 51/136 (37.50%), Postives = 68/136 (50.00%), Query Frame = -3
Query:  319 TPKCVRKCVKKNQLWRNSKPSSISAYRINFDPEGIMAEIFKNGPVEVSFPVYEDFAPYKFGVYKPIPGDV--------MGGHAVKLIGWG--TSDDGED--YWIFANQWNRSWGGDGFFKIKRGSNECGIEEDVVG 690
            T +C    V  N +++ +       YR+  D + IM E+ +NGPV+    V+EDF  Y+ G+Y   P            G H+VK+ GWG  T  DG    YW  AN W   WG  G F+I RG NEC IE  V+G
Sbjct:  324 TSRCPNSQVDSNDIYQVTP-----VYRLASDEKEIMKELMENGPVQALMEVHEDFFLYQRGIYSHTPVSQGRPEQYRRHGTHSVKITGWGEETLPDGRTIKYWTAANSWGPWWGERGHFRIVRGINECDIETFVLG 454          
BLAST of CB291108 vs. ExPASy Swiss-Prot
Match: CATC_BOVIN (Dipeptidyl-peptidase 1 OS=Bos taurus GN=CTSC PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 4.255e-16
Identity = 42/100 (42.00%), Postives = 58/100 (58.00%), Query Frame = -3
Query:  301 EIFKNGPVEVSFPVYEDFAPYKFGVYK------PIPGDVMGGHAVKLIGWGT-SDDGEDYWIFANQWNRSWGGDGFFKIKRGSNECGIEEDVVGGFPSSK 579
            E+   GP+ V+F VY+DF  Y+ GVY       P     +  HAV L+G+GT +  G DYWI  N W  SWG +G+F+I+RG++EC IE   +   P  K
Sbjct:  363 ELVHQGPMAVAFEVYDDFLHYRKGVYHHTGLRDPFNPFELTNHAVLLVGYGTDAASGLDYWIVKNSWGTSWGENGYFRIRRGTDECAIESIALAATPIPK 462          
BLAST of CB291108 vs. ExPASy Swiss-Prot
Match: CATC_MOUSE (Dipeptidyl-peptidase 1 OS=Mus musculus GN=Ctsc PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 6.145e-15
Identity = 39/100 (39.00%), Postives = 56/100 (56.00%), Query Frame = -3
Query:  301 EIFKNGPVEVSFPVYEDFAPYKFGVYK------PIPGDVMGGHAVKLIGWGTSD-DGEDYWIFANQWNRSWGGDGFFKIKRGSNECGIEEDVVGGFPSSK 579
            E+ K+GP+ V+F V++DF  Y  G+Y       P     +  HAV L+G+G     G +YWI  N W  +WG  G+F+I+RG++EC IE   V   P  K
Sbjct:  362 ELVKHGPMAVAFEVHDDFLHYHSGIYHHTGLSDPFNPFELTNHAVLLVGYGRDPVTGIEYWIIKNSWGSNWGESGYFRIRRGTDECAIESIAVAAIPIPK 461          
BLAST of CB291108 vs. ExPASy Swiss-Prot
Match: CATC_RAT (Dipeptidyl-peptidase 1 OS=Rattus norvegicus GN=Ctsc PE=1 SV=3)

HSP 1 Score: 80.8777 bits (198), Expect = 8.025e-15
Identity = 39/100 (39.00%), Postives = 55/100 (55.00%), Query Frame = -3
Query:  301 EIFKNGPVEVSFPVYEDFAPYKFGVYK------PIPGDVMGGHAVKLIGWGTSD-DGEDYWIFANQWNRSWGGDGFFKIKRGSNECGIEEDVVGGFPSSK 579
            E+ K+GP+ V+F V++DF  Y  G+Y       P     +  HAV L+G+G     G DYWI  N W   WG  G+F+I+RG++EC IE   +   P  K
Sbjct:  362 ELVKHGPMAVAFEVHDDFLHYHSGIYHHTGLSDPFNPFELTNHAVLLVGYGKDPVTGLDYWIVKNSWGSQWGESGYFRIRRGTDECAIESIAMAAIPIPK 461          
BLAST of CB291108 vs. ExPASy Swiss-Prot
Match: CATC_SCHMA (Cathepsin C OS=Schistosoma mansoni PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.513e-13
Identity = 38/92 (41.30%), Postives = 48/92 (52.17%), Query Frame = -3
Query:  334 EIFKNGPVEVSFPVYEDFAPYKFGVYKPIPGDV---------MGGHAVKLIGWGTSD-DGEDYWIFANQWNRSWGGDGFFKIKRGSNECGIE 579
            E+  NGP  V F VYEDF  YK G+Y                +  HAV L+G+G     GE YW   N W   WG  G+F+I RG++ECG+E
Sbjct:  353 ELISNGPFPVGFEVYEDFQFYKEGIYHHTTVQTDHYNFNPFELTNHAVLLVGYGVDKLSGEPYWKVKNSWGVEWGEQGYFRILRGTDECGVE 444          
BLAST of CB291108 vs. ExPASy Swiss-Prot
Match: CATZ_RAT (Cathepsin Z OS=Rattus norvegicus GN=Ctsz PE=1 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 1.673e-12
Identity = 43/136 (31.62%), Postives = 59/136 (43.38%), Query Frame = -3
Query:  259 VKKNQLWRNSKPSSISAYRINFDPEGIMAEIFKNGPVEVSFPVYEDFAPYKFGVYKPIPGDVMGGHAVKLIGWGTSDDGEDYWIFANQWNRSWGGDGFFKIKRGSNECGIEEDVVGGFPSSKNFVKEITSADMFGD 666
            ++   LWR     S+S        E +MAEI+ NGP+       E  + Y  G+Y       +  H + + GWG S+DG +YWI  N W   WG  G+ +I        +     GG  SS N    I  A  FGD
Sbjct:  184 IQNYTLWRVGDYGSLSGR------EKMMAEIYANGPISCGIMATERMSNYTGGIYTEYQNQAIINHIISVAGWGVSNDGIEYWIVRNSWGEPWGERGWMRI--------VTSTYKGGTGSSYNLA--IEEACTFGD 303          
BLAST of CB291108 vs. ExPASy Swiss-Prot
Match: CATZ_MOUSE (Cathepsin Z OS=Mus musculus GN=Ctsz PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.728e-12
Identity = 43/136 (31.62%), Postives = 59/136 (43.38%), Query Frame = -3
Query:  259 VKKNQLWRNSKPSSISAYRINFDPEGIMAEIFKNGPVEVSFPVYEDFAPYKFGVYKPIPGDVMGGHAVKLIGWGTSDDGEDYWIFANQWNRSWGGDGFFKIKRGSNECGIEEDVVGGFPSSKNFVKEITSADMFGD 666
            ++   LWR     S+S        E +MAEI+ NGP+       E  + Y  G+Y       +  H + + GWG S+DG +YWI  N W   WG  G+ +I        +     GG   S N    I SA  FGD
Sbjct:  184 IQNYTLWRVGDYGSLSGR------EKMMAEIYANGPISCGIMATEMMSNYTGGIYAEHQDQAVINHIISVAGWGVSNDGIEYWIVRNSWGEPWGEKGWMRI--------VTSTYKGGTGDSYNLA--IESACTFGD 303          
BLAST of CB291108 vs. ExPASy Swiss-Prot
Match: CYSP3_SOLLC (Cysteine proteinase 3 OS=Solanum lycopersicum GN=CYP-3 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.156e-11
Identity = 34/80 (42.50%), Postives = 45/80 (56.25%), Query Frame = -3
Query:  337 PVEVSFPVYEDFAPYKFGVYKPI-----PGDVMGGHAVKLIGWGTSDDGEDYWIFANQWNRSWGGDGFFKIKRGSNECGI 561
            PV V+F V + F  YK GVY        P DV   HAV  +G+G  ++G  YW+  N W   WG DG+FK++ G N CG+
Sbjct:  270 PVSVAFEVVKGFKQYKSGVYASTECGDTPMDV--NHAVLAVGYGV-ENGTPYWLIKNSWGADWGEDGYFKMEMGKNMCGV 346          
The following BLAST results are available for this feature:
BLAST of CB291108 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 43
Match NameE-valueIdentityDescription
YCF2E_CAEEL6.565e-1738.39Uncharacterized peptidase C1-like protein F26E4.3 ... [more]
CATC_HUMAN8.574e-1743.00Dipeptidyl-peptidase 1 OS=Homo sapiens GN=CTSC PE=... [more]
TINAL_RAT3.258e-1637.50Tubulointerstitial nephritis antigen-like OS=Rattu... [more]
CATC_BOVIN4.255e-1642.00Dipeptidyl-peptidase 1 OS=Bos taurus GN=CTSC PE=2 ... [more]
CATC_MOUSE6.145e-1539.00Dipeptidyl-peptidase 1 OS=Mus musculus GN=Ctsc PE=... [more]
CATC_RAT8.025e-1539.00Dipeptidyl-peptidase 1 OS=Rattus norvegicus GN=Cts... [more]
CATC_SCHMA1.513e-1341.30Cathepsin C OS=Schistosoma mansoni PE=2 SV=1[more]
CATZ_RAT1.673e-1231.62Cathepsin Z OS=Rattus norvegicus GN=Ctsz PE=1 SV=2[more]
CATZ_MOUSE3.728e-1231.62Cathepsin Z OS=Mus musculus GN=Ctsz PE=2 SV=1[more]
CYSP3_SOLLC3.156e-1142.50Cysteine proteinase 3 OS=Solanum lycopersicum GN=C... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_02be08_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_02be08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB291108 ID=CB291108; Name=CB291108; organism=Citrus sinensis; type=EST; length=737bp
TTTTTTTTTTTTTTTTTAAGCAATGATGGGACATTTTTCATCTAAACGAA
TAATTCGGGGAGGAAAAACCAAGTTATTACAACTGGTTCTATTTTTACAC
CCAACATTAAACTCCATTAATACATTCAATTATGCAAAACGGGAGCTTCC
CATTTCATGCCTTGATAGCTTAGGGTCAACGAAACCCCCCTATAGCTACA
CATTTGATATATAAAAAACAACATGAAGGGATAACAAAGTCTGCTCTCAA
GCTGAAGCATCCCCAAACATATCTGCACTTGTAATCTCTTTGACAAAATT
TTTGGATGAAGGGAAACCACCAACCACATCCTCTTCAATACCACACTCAT
TTGATCCTCTTTTAATCTTGAAGAAACCATCCCCACCCCAGCTTCTATTC
CACTGATTAGCGAAAATCCAGTAATCCTCGCCATCATCACTAGTTCCCCA
ACCAATAAGCTTAACAGCATGACCCCCCATTACATCCCCTGGGATGGGTT
TGTAAACCCCAAATTTGTAGGGAGCAAAATCCTCATAAACTGGGAAGGAA
ACTTCAACTGGGCCATTCTTGAAAATTTCTGCCATTATGCCCTCTGGATC
AAAATTGATTCTATATGCACTAATACTGGAGGGCTTTGAATTCCTCCAAA
GCTGGTTTTTCTTGACGCACTTCCTCACACACTTTGGAGTAAGATATGCC
GGCTCACAACCAGGGGGGGAACAGCCAGTACTATCAA
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