CB291108

Overview
NameCB291108
Unique NameCB291108
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length737
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB291108 vs. ExPASy Swiss-Prot
Match: CYSP2_MAIZE (Cysteine proteinase 2 OS=Zea mays GN=CCP2 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.030e-11
Identity = 34/80 (42.50%), Postives = 44/80 (55.00%), Query Frame = -3
Query:  337 PVEVSFPVYEDFAPYKFGVYKP-----IPGDVMGGHAVKLIGWGTSDDGEDYWIFANQWNRSWGGDGFFKIKRGSNECGI 561
            PV V+F V   F  YK GVY        P DV   HAV  +G+G  +DG  YW+  N W   WG +G+FK++ G N CG+
Sbjct:  274 PVSVAFEVITGFRLYKSGVYTSDHCGTTPMDV--NHAVLAVGYGV-EDGVPYWLIKNSWGADWGDEGYFKMEMGKNMCGV 350          
BLAST of CB291108 vs. ExPASy Swiss-Prot
Match: CATH_RAT (Cathepsin H OS=Rattus norvegicus GN=Ctsh PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.182e-11
Identity = 39/97 (40.21%), Postives = 50/97 (51.55%), Query Frame = -3
Query:  337 INFDPEGIMAE-IFKNGPVEVSFPVYEDFAPYKFGVYKP-----IPGDVMGGHAVKLIGWGTSDDGEDYWIFANQWNRSWGGDGFFKIKRGSNECGI 609
            I  + E  M E +    PV  +F V EDF  YK GVY        P  V   HAV  +G+G   +G  YWI  N W  +WG +G+F I+RG N CG+
Sbjct:  229 ITLNDEAAMVEAVALYNPVSFAFEVTEDFMMYKSGVYSSNSCHKTPDKV--NHAVLAVGYG-EQNGLLYWIVKNSWGSNWGNNGYFLIERGKNMCGL 322          
BLAST of CB291108 vs. ExPASy Swiss-Prot
Match: ALEU_ARATH (Thiol protease aleurain OS=Arabidopsis thaliana GN=ALEU PE=1 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 9.182e-11
Identity = 34/80 (42.50%), Postives = 43/80 (53.75%), Query Frame = -3
Query:  337 PVEVSFPVYEDFAPYKFGVYKP-----IPGDVMGGHAVKLIGWGTSDDGEDYWIFANQWNRSWGGDGFFKIKRGSNECGI 561
            PV ++F V   F  YK GVY        P DV   HAV  +G+G  +DG  YW+  N W   WG  G+FK++ G N CGI
Sbjct:  272 PVSIAFEVIHSFRLYKSGVYTDSHCGSTPMDV--NHAVLAVGYGV-EDGVPYWLIKNSWGADWGDKGYFKMEMGKNMCGI 348          
The following BLAST results are available for this feature:
BLAST of CB291108 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 43
Match NameE-valueIdentityDescription
CYSP2_MAIZE7.030e-1142.50Cysteine proteinase 2 OS=Zea mays GN=CCP2 PE=2 SV=... [more]
CATH_RAT9.182e-1140.21Cathepsin H OS=Rattus norvegicus GN=Ctsh PE=1 SV=1[more]
ALEU_ARATH9.182e-1142.50Thiol protease aleurain OS=Arabidopsis thaliana GN... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS01_02be08_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_02be08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB291108 ID=CB291108; Name=CB291108; organism=Citrus sinensis; type=EST; length=737bp
TTTTTTTTTTTTTTTTTAAGCAATGATGGGACATTTTTCATCTAAACGAA
TAATTCGGGGAGGAAAAACCAAGTTATTACAACTGGTTCTATTTTTACAC
CCAACATTAAACTCCATTAATACATTCAATTATGCAAAACGGGAGCTTCC
CATTTCATGCCTTGATAGCTTAGGGTCAACGAAACCCCCCTATAGCTACA
CATTTGATATATAAAAAACAACATGAAGGGATAACAAAGTCTGCTCTCAA
GCTGAAGCATCCCCAAACATATCTGCACTTGTAATCTCTTTGACAAAATT
TTTGGATGAAGGGAAACCACCAACCACATCCTCTTCAATACCACACTCAT
TTGATCCTCTTTTAATCTTGAAGAAACCATCCCCACCCCAGCTTCTATTC
CACTGATTAGCGAAAATCCAGTAATCCTCGCCATCATCACTAGTTCCCCA
ACCAATAAGCTTAACAGCATGACCCCCCATTACATCCCCTGGGATGGGTT
TGTAAACCCCAAATTTGTAGGGAGCAAAATCCTCATAAACTGGGAAGGAA
ACTTCAACTGGGCCATTCTTGAAAATTTCTGCCATTATGCCCTCTGGATC
AAAATTGATTCTATATGCACTAATACTGGAGGGCTTTGAATTCCTCCAAA
GCTGGTTTTTCTTGACGCACTTCCTCACACACTTTGGAGTAAGATATGCC
GGCTCACAACCAGGGGGGGAACAGCCAGTACTATCAA
back to top