CB291119

Overview
NameCB291119
Unique NameCB291119
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length672
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB291119 vs. ExPASy Swiss-Prot
Match: RL17_ARGMO (60S ribosomal protein L17 OS=Argas monolakensis GN=RpL17 PE=2 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.242e-26
Identity = 62/93 (66.67%), Postives = 69/93 (74.19%), Query Frame = -3
Query:  386 FTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYIFHIQVNQAQKQRPRPSRVHGRINPYMSSPCHIELPFS 664
            F RF GGVGR AQAK      QGRWP KSA+F+  LL+NAESNA+ KGLDVD L I HIQVN+A K R R  R HGRINPYMSSPCH+E+  S
Sbjct:   60 FRRFNGGVGRKAQAKAWGCT-QGRWPKKSAEFLWQLLRNAESNADYKGLDVDRLVIDHIQVNRAPKMRRRTYRAHGRINPYMSSPCHVEVILS 151          
BLAST of CB291119 vs. ExPASy Swiss-Prot
Match: RL17_DROPS (60S ribosomal protein L17 OS=Drosophila pseudoobscura pseudoobscura GN=RpL17 PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 2.929e-26
Identity = 58/90 (64.44%), Postives = 69/90 (76.67%), Query Frame = -3
Query:  395 FTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYIFHIQVNQAQKQRPRPSRVHGRINPYMSSPCHIEL 664
            F RF GGVGR AQAK +    QGRWP KSA+F+L LL+NAE+NA+ KGLD D + + HIQVN+AQ  R R  R HGRINPYMSSPCH+E+
Sbjct:   60 FRRFNGGVGRCAQAK-QWKTTQGRWPKKSAEFLLQLLRNAEANADCKGLDADRMVVHHIQVNRAQCLRRRTYRAHGRINPYMSSPCHVEV 148          
BLAST of CB291119 vs. ExPASy Swiss-Prot
Match: RL17_BIPLU (60S ribosomal protein L17 OS=Biphyllus lunatus GN=RpL17 PE=2 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 2.929e-26
Identity = 61/90 (67.78%), Postives = 68/90 (75.56%), Query Frame = -3
Query:  395 FTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYIFHIQVNQAQKQRPRPSRVHGRINPYMSSPCHIEL 664
            F RF GGVGR AQAK +    QGRWP KSA+F+L LL+NAESNA+  GLDVD L + HIQVN+A   R R  R HGRINPYMSSPCHIEL
Sbjct:   60 FRRFNGGVGRCAQAK-QFGTTQGRWPKKSAEFLLQLLRNAESNADYSGLDVDRLVVQHIQVNRAACLRRRTYRAHGRINPYMSSPCHIEL 148          
BLAST of CB291119 vs. ExPASy Swiss-Prot
Match: RL17_ANOGA (60S ribosomal protein L17 OS=Anopheles gambiae GN=RpL17 PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 2.929e-26
Identity = 62/90 (68.89%), Postives = 68/90 (75.56%), Query Frame = -3
Query:  395 FTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYIFHIQVNQAQKQRPRPSRVHGRINPYMSSPCHIEL 664
            F RF GGVGR AQAK+      GRWP KSA+F+L LLKNAE+NA+ KGLDVD L I HIQVN+A   R R  R HGRINPYMSSPCHIEL
Sbjct:   60 FRRFNGGVGRCAQAKH-WGTSVGRWPKKSAEFLLQLLKNAEANADYKGLDVDRLVINHIQVNRAPCLRRRTYRAHGRINPYMSSPCHIEL 148          
BLAST of CB291119 vs. ExPASy Swiss-Prot
Match: RL17_DIACI (60S ribosomal protein L17 OS=Diaphorina citri GN=RpL17 PE=2 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 4.995e-26
Identity = 61/93 (65.59%), Postives = 69/93 (74.19%), Query Frame = -3
Query:  386 FTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYIFHIQVNQAQKQRPRPSRVHGRINPYMSSPCHIELPFS 664
            F R+ GGVGR AQAK +    QGRWP KSA F+L LLKNAESNA+ +GLD D L I HIQVN+A + R R  R HGRINPYMSSPCHIE+  S
Sbjct:   60 FRRYNGGVGRCAQAK-QWGTTQGRWPRKSADFLLQLLKNAESNADYRGLDTDRLVIEHIQVNRAPRLRRRTYRAHGRINPYMSSPCHIEVILS 151          
BLAST of CB291119 vs. ExPASy Swiss-Prot
Match: RL17_AEDAL (60S ribosomal protein L17 OS=Aedes albopictus GN=RpL17 PE=2 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 4.995e-26
Identity = 60/90 (66.67%), Postives = 70/90 (77.78%), Query Frame = -3
Query:  395 FTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYIFHIQVNQAQKQRPRPSRVHGRINPYMSSPCHIEL 664
            F RF GGVGR AQAK+ + +  GRWP KSA+F+L LLKNAE+NA+ +GLDVD L + HIQVN+A   R R  R HGRINPYMSSPCHIEL
Sbjct:   60 FRRFNGGVGRCAQAKHWNTS-VGRWPKKSAEFLLQLLKNAEANADYRGLDVDRLVVDHIQVNRAPCLRRRTYRAHGRINPYMSSPCHIEL 148          
BLAST of CB291119 vs. ExPASy Swiss-Prot
Match: RL17_AEDAE (60S ribosomal protein L17 OS=Aedes aegypti GN=RpL17 PE=2 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 4.995e-26
Identity = 60/90 (66.67%), Postives = 70/90 (77.78%), Query Frame = -3
Query:  395 FTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYIFHIQVNQAQKQRPRPSRVHGRINPYMSSPCHIEL 664
            F RF GGVGR AQAK+ + +  GRWP KSA+F+L LLKNAE+NA+ +GLDVD L + HIQVN+A   R R  R HGRINPYMSSPCHIEL
Sbjct:   60 FRRFNGGVGRCAQAKHWNTS-VGRWPKKSAEFLLQLLKNAEANADYRGLDVDRLVVDHIQVNRAPCLRRRTYRAHGRINPYMSSPCHIEL 148          
BLAST of CB291119 vs. ExPASy Swiss-Prot
Match: RL17_AGRLI (60S ribosomal protein L17 OS=Agriotes lineatus GN=RpL17 PE=2 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 8.521e-26
Identity = 60/90 (66.67%), Postives = 68/90 (75.56%), Query Frame = -3
Query:  395 FTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYIFHIQVNQAQKQRPRPSRVHGRINPYMSSPCHIEL 664
            F RF GGVGR AQAK +    QGRWP KSA+F+L +L+NAESNA+  GLDVD L I HIQVN+A   R R  R HGRINPYMSSPCHIE+
Sbjct:   60 FRRFNGGVGRCAQAK-QWGTTQGRWPKKSAEFLLQMLRNAESNADYSGLDVDRLVIEHIQVNRAACLRRRTYRAHGRINPYMSSPCHIEM 148          
BLAST of CB291119 vs. ExPASy Swiss-Prot
Match: RL17_ASPFU (60S ribosomal protein L17 OS=Aspergillus fumigatus GN=rpl17 PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.113e-25
Identity = 57/90 (63.33%), Postives = 68/90 (75.56%), Query Frame = -3
Query:  395 FTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYIFHIQVNQAQKQRPRPSRVHGRINPYMSSPCHIEL 664
            F R+ G +GRTAQ K    + + RWPVKSA+F+LDLLKNAE+NA+ KGLD   L + HIQVNQA K R R  R HGRINPYM++PCHIEL
Sbjct:   67 FRRYAGSIGRTAQGKQWGVS-KARWPVKSAQFLLDLLKNAEANADTKGLDTGNLIVKHIQVNQAPKGRRRTYRAHGRINPYMTNPCHIEL 155          
BLAST of CB291119 vs. ExPASy Swiss-Prot
Match: RL17_BOMMO (60S ribosomal protein L17 OS=Bombyx mori GN=RpL17 PE=2 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.453e-25
Identity = 62/93 (66.67%), Postives = 69/93 (74.19%), Query Frame = -3
Query:  386 FTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYIFHIQVNQAQKQRPRPSRVHGRINPYMSSPCHIELPFS 664
            F RF GGVGR AQAK +    QGRWP KSA+F+L LL+NAESNA+ K LDVD L I HIQVN+A   R R  R HGRINPYMSSPCHIE+  S
Sbjct:   60 FRRFNGGVGRCAQAK-QFGTTQGRWPKKSAEFLLQLLRNAESNADNKTLDVDRLVIDHIQVNRAPCLRRRTYRAHGRINPYMSSPCHIEVCLS 151          
The following BLAST results are available for this feature:
BLAST of CB291119 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 41
Match NameE-valueIdentityDescription
RL17_ARGMO2.242e-2666.6760S ribosomal protein L17 OS=Argas monolakensis GN... [more]
RL17_DROPS2.929e-2664.4460S ribosomal protein L17 OS=Drosophila pseudoobsc... [more]
RL17_BIPLU2.929e-2667.7860S ribosomal protein L17 OS=Biphyllus lunatus GN=... [more]
RL17_ANOGA2.929e-2668.8960S ribosomal protein L17 OS=Anopheles gambiae GN=... [more]
RL17_DIACI4.995e-2665.5960S ribosomal protein L17 OS=Diaphorina citri GN=R... [more]
RL17_AEDAL4.995e-2666.6760S ribosomal protein L17 OS=Aedes albopictus GN=R... [more]
RL17_AEDAE4.995e-2666.6760S ribosomal protein L17 OS=Aedes aegypti GN=RpL1... [more]
RL17_AGRLI8.521e-2666.6760S ribosomal protein L17 OS=Agriotes lineatus GN=... [more]
RL17_ASPFU1.113e-2563.3360S ribosomal protein L17 OS=Aspergillus fumigatus... [more]
RL17_BOMMO1.453e-2566.6760S ribosomal protein L17 OS=Bombyx mori GN=RpL17 ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_02bf01_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_02bf01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB291119 ID=CB291119; Name=CB291119; organism=Citrus sinensis; type=EST; length=672bp
AACCGAACCAACCATTTACAAGATATTCAAATTCGATTAGCTGATAATGG
CATTTGGTTTGGAATGACAACTCATACACCCATATCTCTAAGCTTCAAAA
TAAGCTTGAAAAGTCTTTAATTTTCATAAAGCTCCAACAGAATGACTGAG
GATTCTAACAAAACAGTAAACTGGACTTAATATGAAATAAACAAAATATG
ATGTCTGATTTGACTAAATAACATCTCAGTCACTATTAAAGGGAAAAAAA
CTCCCTTCATCAAGAACACAAAATAAAAAATCAATGCACTCTCCAATTGC
TATGCTAAACCTCAAACAATTACTTCTTTGATTTGCTAGTTGCCAACTGG
GCCTCAGGCTCTTTCTTTACGGGCTCTTCCTTTTCAGAAAAGGGCAACTC
AATATGGCAGGGAGAGGACATGTAAGGATTAATTCTTCCATGAACACGGG
ATGGGCGGGGCCTTTGCTTTTGTGCCTGGTTGACTTGGATGTGAAAAATG
TAAAGTGCATCAACATCTAAACCTTTCACCTCAGCATTACTCTCAGCATT
CTTGAGCAAGTCAAGAATGAACTTTGCTGATTTGACAGGCCATCGACCCT
GTCCATTTGGATGCCTATTCTTTGCCTGAGCAGTACGTCCAACACCACCG
CAAAATCGTGTGAAGCCTCGTG
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