CB304393

Overview
NameCB304393
Unique NameCB304393
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length653
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB304393 vs. ExPASy Swiss-Prot
Match: G3P2_TRIKO (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Trichoderma koningii GN=gpd2 PE=1 SV=3)

HSP 1 Score: 146.362 bits (368), Expect = 1.257e-34
Identity = 70/104 (67.31%), Postives = 85/104 (81.73%), Query Frame = -3
Query:  340 GMAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFGAKAGIVLSKKFVKLVSWYDNEWGYSTRVVDLIVHMAK 651
            GM+ RVPT +VSVVDLTVR+EK ASY+EI   IK  ++G LKG+L YT DDVVS+D +G++ SSIF  KAGI L+K FVKLVSWYDNEWGYS RV+DL+ H+AK
Sbjct:  230 GMSIRVPTANVSVVDLTVRIEKGASYEEITETIKKAADGPLKGVLAYTGDDVVSSDMLGNTNSSIFDIKAGISLNKNFVKLVSWYDNEWGYSRRVLDLLAHVAK 333          
BLAST of CB304393 vs. ExPASy Swiss-Prot
Match: G3P_NEUCR (Glyceraldehyde 3-phosphate-dehydrogenase OS=Neurospora crassa GN=gpd-1 PE=2 SV=2)

HSP 1 Score: 145.976 bits (367), Expect = 1.642e-34
Identity = 73/104 (70.19%), Postives = 84/104 (80.77%), Query Frame = -3
Query:  340 GMAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFGAKAGIVLSKKFVKLVSWYDNEWGYSTRVVDLIVHMAK 651
            GMA RVPT +VSVVDLT R+EK A+YDEIK  IK  SEG L GIL YTED+VVS+D  G+  SSIF AKAGI L+K FVKLVSWYDNEWGYS RV+DLI +++K
Sbjct:  229 GMAMRVPTANVSVVDLTARIEKGATYDEIKEVIKKASEGPLAGILAYTEDEVVSSDMNGNPASSIFDAKAGISLNKNFVKLVSWYDNEWGYSRRVLDLISYISK 332          
BLAST of CB304393 vs. ExPASy Swiss-Prot
Match: G3P_DROHY (Glyceraldehyde-3-phosphate dehydrogenase OS=Drosophila hydei GN=Gapdh1 PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.642e-34
Identity = 71/102 (69.61%), Postives = 86/102 (84.31%), Query Frame = -3
Query:  346 GMAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFGAKAGIVLSKKFVKLVSWYDNEWGYSTRVVDLIVHM 651
            GMAFRVPT +VSVVDLTVRL K ASYDEIKA ++  + G LKGILGYT+++VVSTDF+ D+ SS+F  KAGI L+ KFVKL+SWYDNE+GYS RV+DLI +M
Sbjct:  227 GMAFRVPTPNVSVVDLTVRLGKGASYDEIKAKVQEAANGPLKGILGYTDEEVVSTDFLSDTHSSVFEPKAGISLNDKFVKLISWYDNEFGYSNRVIDLIKYM 328          
BLAST of CB304393 vs. ExPASy Swiss-Prot
Match: G3P_DICDI (Glyceraldehyde-3-phosphate dehydrogenase OS=Dictyostelium discoideum GN=gpdA PE=1 SV=2)

HSP 1 Score: 145.976 bits (367), Expect = 1.642e-34
Identity = 73/105 (69.52%), Postives = 87/105 (82.86%), Query Frame = -3
Query:  340 GMAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEG-KLKGILGYTEDDVVSTDFVGDSRSSIFGAKAGIVLSKKFVKLVSWYDNEWGYSTRVVDLIVHMAK 651
            GM+FRVP  DVSVVDLTVRLEK A+Y+EIK  +KA SE  K K  +GYTED+VVSTDF+GD+ SSIF A AGI L+  FVKLVSWYDNE GYSTRV+DL+V+++K
Sbjct:  229 GMSFRVPNCDVSVVDLTVRLEKKATYEEIKKVMKAASESDKYKRYIGYTEDEVVSTDFIGDTHSSIFDAHAGIALNDNFVKLVSWYDNEMGYSTRVIDLLVYISK 333          
BLAST of CB304393 vs. ExPASy Swiss-Prot
Match: G3P1_JACOR (Glyceraldehyde-3-phosphate dehydrogenase, muscle OS=Jaculus orientalis PE=1 SV=2)

HSP 1 Score: 145.976 bits (367), Expect = 1.642e-34
Identity = 73/106 (68.87%), Postives = 83/106 (78.30%), Query Frame = -3
Query:  334 GMAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFGAKAGIVLSKKFVKLVSWYDNEWGYSTRVVDLIVHMAKTQ 651
            GMAFRVPT +VSVVDLT RLEK A YD+IK  +K   +G LKG+LGYTE  VVS+DF GDS SS F A AGI L+  FVKLVSWYDNE+GYS RVVDL+VHMA  +
Sbjct:  258 GMAFRVPTANVSVVDLTCRLEKPAKYDDIKRVVKQACDGPLKGMLGYTEHQVVSSDFNGDSHSSTFDAGAGIALNDHFVKLVSWYDNEFGYSNRVVDLMVHMASKE 363          
BLAST of CB304393 vs. ExPASy Swiss-Prot
Match: G3P_FELCA (Glyceraldehyde-3-phosphate dehydrogenase OS=Felis catus GN=GAPDH PE=2 SV=3)

HSP 1 Score: 145.591 bits (366), Expect = 2.144e-34
Identity = 73/106 (68.87%), Postives = 82/106 (77.36%), Query Frame = -3
Query:  334 GMAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFGAKAGIVLSKKFVKLVSWYDNEWGYSTRVVDLIVHMAKTQ 651
            GMAFRVPT +VSVVDLT RLEK A YD+IK  +K  SEG LKGILGYTED VVS DF  D+ SS F A AGI L+  FVKL+SWYDNE+GYS RVVDL+ HMA  +
Sbjct:  228 GMAFRVPTPNVSVVDLTCRLEKAAKYDDIKKVVKQASEGPLKGILGYTEDQVVSCDFNSDTHSSTFDAGAGIALNDHFVKLISWYDNEFGYSNRVVDLMAHMASKE 333          
BLAST of CB304393 vs. ExPASy Swiss-Prot
Match: G3P_AJECA (Glyceraldehyde-3-phosphate dehydrogenase OS=Ajellomyces capsulata GN=GPD PE=2 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 2.801e-34
Identity = 70/104 (67.31%), Postives = 84/104 (80.77%), Query Frame = -3
Query:  340 GMAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFGAKAGIVLSKKFVKLVSWYDNEWGYSTRVVDLIVHMAK 651
            GM+ RVPT +VSVVDLT + EK  +YD+IK  IK  SEG+LKGILGY+ED +VS+D  GDSRSSIF A AGI L+  F+KL+SWYDNEWGYS RVVDLI ++AK
Sbjct:  229 GMSMRVPTANVSVVDLTCKTEKPVTYDQIKQTIKKASEGELKGILGYSEDALVSSDLNGDSRSSIFDASAGIALNDHFIKLISWYDNEWGYSRRVVDLIAYIAK 332          
BLAST of CB304393 vs. ExPASy Swiss-Prot
Match: G3P_MUSPF (Glyceraldehyde-3-phosphate dehydrogenase OS=Mustela putorius furo GN=GAPDH PE=2 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 3.658e-34
Identity = 73/106 (68.87%), Postives = 83/106 (78.30%), Query Frame = -3
Query:  334 GMAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFGAKAGIVLSKKFVKLVSWYDNEWGYSTRVVDLIVHMAKTQ 651
            GMAFRVPT +VSVVDLT RLEK A YD+IK  +K  SEG LKGILGYTED VVS DF  D+ SS F A AGI L+  FVKL+SWYDNE+GYS RVVDL+V+MA  +
Sbjct:  228 GMAFRVPTPNVSVVDLTCRLEKAAKYDDIKKVVKQASEGPLKGILGYTEDQVVSCDFNSDTHSSTFDAGAGIALNDHFVKLISWYDNEFGYSNRVVDLMVYMASKE 333          
BLAST of CB304393 vs. ExPASy Swiss-Prot
Match: G3P_HUMAN (Glyceraldehyde-3-phosphate dehydrogenase OS=Homo sapiens GN=GAPDH PE=1 SV=3)

HSP 1 Score: 144.821 bits (364), Expect = 3.658e-34
Identity = 72/106 (67.92%), Postives = 82/106 (77.36%), Query Frame = -3
Query:  334 GMAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFGAKAGIVLSKKFVKLVSWYDNEWGYSTRVVDLIVHMAKTQ 651
            GMAFRVPT +VSVVDLT RLEK A YD+IK  +K  SEG LKGILGYTE  VVS+DF  D+ SS F A AGI L+  FVKL+SWYDNE+GYS RVVDL+ HMA  +
Sbjct:  230 GMAFRVPTANVSVVDLTCRLEKPAKYDDIKKVVKQASEGPLKGILGYTEHQVVSSDFNSDTHSSTFDAGAGIALNDHFVKLISWYDNEFGYSNRVVDLMAHMASKE 335          
BLAST of CB304393 vs. ExPASy Swiss-Prot
Match: G3P_CANFA (Glyceraldehyde-3-phosphate dehydrogenase OS=Canis familiaris GN=GAPDH PE=2 SV=3)

HSP 1 Score: 144.821 bits (364), Expect = 3.658e-34
Identity = 73/106 (68.87%), Postives = 83/106 (78.30%), Query Frame = -3
Query:  334 GMAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFGAKAGIVLSKKFVKLVSWYDNEWGYSTRVVDLIVHMAKTQ 651
            GMAFRVPT +VSVVDLT RLEK A YD+IK  +K  SEG LKGILGYTED VVS DF  D+ SS F A AGI L+  FVKL+SWYDNE+GYS RVVDL+V+MA  +
Sbjct:  228 GMAFRVPTPNVSVVDLTCRLEKAAKYDDIKKVVKQASEGPLKGILGYTEDQVVSCDFNSDTHSSTFDAGAGIALNDHFVKLISWYDNEFGYSNRVVDLMVYMASKE 333          
The following BLAST results are available for this feature:
BLAST of CB304393 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 342
Match NameE-valueIdentityDescription
G3P2_TRIKO1.257e-3467.31Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Tric... [more]
G3P_NEUCR1.642e-3470.19Glyceraldehyde 3-phosphate-dehydrogenase OS=Neuros... [more]
G3P_DROHY1.642e-3469.61Glyceraldehyde-3-phosphate dehydrogenase OS=Drosop... [more]
G3P_DICDI1.642e-3469.52Glyceraldehyde-3-phosphate dehydrogenase OS=Dictyo... [more]
G3P1_JACOR1.642e-3468.87Glyceraldehyde-3-phosphate dehydrogenase, muscle O... [more]
G3P_FELCA2.144e-3468.87Glyceraldehyde-3-phosphate dehydrogenase OS=Felis ... [more]
G3P_AJECA2.801e-3467.31Glyceraldehyde-3-phosphate dehydrogenase OS=Ajello... [more]
G3P_MUSPF3.658e-3468.87Glyceraldehyde-3-phosphate dehydrogenase OS=Mustel... [more]
G3P_HUMAN3.658e-3467.92Glyceraldehyde-3-phosphate dehydrogenase OS=Homo s... [more]
G3P_CANFA3.658e-3468.87Glyceraldehyde-3-phosphate dehydrogenase OS=Canis ... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0001_IIIaR_B10 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0001_IIIaR_B10 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304393 ID=CB304393; Name=CB304393; organism=Citrus sinensis; type=EST; length=653bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTCGCAGCTGAAGAACAGGTCTT
CGATACTAACTAGATGAAAAATTATAAAAGCAAGTTTCCAATAGACAATT
GTTTTCTCGCTAACAAAACATAAGTTGGTTCACCAACTCTTCTTGCATAC
TACAAGGGAAAATCTAAGCACAACCCTGCATGAGCAGGTAAGGCTCTGGA
TAATGTCTTGGAAACAATTTTATTTAAACTCAGACCCTCTACATAGAAAC
ACAAACACCACATTTAGCGCAAAGAAACACCACACTTAGCACAACTAAGC
GTGTTACATACTCAAGCCACGCCGAGTAAGTTACTGGGTCTTCGCCATGT
GGACAATCAAATCCACCACACGAGTACTGTAGCCCCACTCATTGTCATAC
CATGAGACAAGCTTCACAAATTTCTTACTCAAAACAATACCAGCCTTGGC
ACCAAAGATACTTGACCTACTGTCACCAACAAAGTCGGTGGATACCACAT
CATCCTCAGTGTATCCCAAGATACCCTTTAGTTTCCCCTCTGACTCCGCC
TTGATGGCAGCTTTGATTTCATCATAAGAAGCGTCCTTCTCCAGCCTCAC
TGTGAGGTCAACCACTGAGACATCAACAGTGGGTACACGGAAAGCCATAC
CAG
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