CB304393

Overview
NameCB304393
Unique NameCB304393
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length653
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB304393 vs. ExPASy Swiss-Prot
Match: G3PT_MACFA (Glyceraldehyde-3-phosphate dehydrogenase, testis-specific OS=Macaca fascicularis GN=GAPDHS PE=2 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 3.658e-34
Identity = 73/102 (71.57%), Postives = 83/102 (81.37%), Query Frame = -3
Query:  346 GMAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFGAKAGIVLSKKFVKLVSWYDNEWGYSTRVVDLIVHM 651
            GMAFRVPT DVSVVDLT RL + A Y  IK AIKA ++G + GIL YTED+VVSTDFVGDS SSIF AKAGI L+  FVKL+SWYDNE+GYS RVVDL+ +M
Sbjct:  303 GMAFRVPTPDVSVVDLTCRLAQPAPYSAIKEAIKAAAKGPMAGILAYTEDEVVSTDFVGDSHSSIFDAKAGIALNDNFVKLISWYDNEYGYSHRVVDLLRYM 404          
BLAST of CB304393 vs. ExPASy Swiss-Prot
Match: G3P_RABIT (Glyceraldehyde-3-phosphate dehydrogenase OS=Oryctolagus cuniculus GN=GAPDH PE=1 SV=3)

HSP 1 Score: 144.05 bits (362), Expect = 6.239e-34
Identity = 73/106 (68.87%), Postives = 82/106 (77.36%), Query Frame = -3
Query:  334 GMAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFGAKAGIVLSKKFVKLVSWYDNEWGYSTRVVDLIVHMAKTQ 651
            GMAFRVPT +VSVVDLT RLEK A YD+IK  +K  SEG LKGILGYTED VVS DF   + SS F A AGI L+  FVKL+SWYDNE+GYS RVVDL+VHMA  +
Sbjct:  228 GMAFRVPTPNVSVVDLTCRLEKAAKYDDIKKVVKQASEGPLKGILGYTEDQVVSCDFNSATHSSTFDAGAGIALNDHFVKLISWYDNEFGYSNRVVDLMVHMASKE 333          
BLAST of CB304393 vs. ExPASy Swiss-Prot
Match: G3P3_CAEEL (Glyceraldehyde-3-phosphate dehydrogenase 3 OS=Caenorhabditis elegans GN=gpd-3 PE=2 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 6.239e-34
Identity = 74/103 (71.84%), Postives = 83/103 (80.58%), Query Frame = -3
Query:  343 GMAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFGAKAGIVLSKKFVKLVSWYDNEWGYSTRVVDLIVHMA 651
            GMAFRVPT DVSVVDLT RLEK AS D+IK  IKA ++G +KGIL YTED VVSTDFV D+ SSIF A A I L+  FVKLVSWYDNE+GYS RVVDLI ++A
Sbjct:  236 GMAFRVPTPDVSVVDLTARLEKPASLDDIKKVIKAAADGPMKGILAYTEDQVVSTDFVSDTNSSIFDAGASISLNPHFVKLVSWYDNEFGYSNRVVDLISYIA 338          
BLAST of CB304393 vs. ExPASy Swiss-Prot
Match: G3P2_CAEEL (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Caenorhabditis elegans GN=gpd-2 PE=1 SV=2)

HSP 1 Score: 144.05 bits (362), Expect = 6.239e-34
Identity = 74/103 (71.84%), Postives = 83/103 (80.58%), Query Frame = -3
Query:  343 GMAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFGAKAGIVLSKKFVKLVSWYDNEWGYSTRVVDLIVHMA 651
            GMAFRVPT DVSVVDLT RLEK AS D+IK  IKA ++G +KGIL YTED VVSTDFV D+ SSIF A A I L+  FVKLVSWYDNE+GYS RVVDLI ++A
Sbjct:  236 GMAFRVPTPDVSVVDLTARLEKPASLDDIKKVIKAAADGPMKGILAYTEDQVVSTDFVSDTNSSIFDAGASISLNPHFVKLVSWYDNEFGYSNRVVDLISYIA 338          
BLAST of CB304393 vs. ExPASy Swiss-Prot
Match: G3P_PICAN (Glyceraldehyde-3-phosphate dehydrogenase OS=Pichia angusta GN=GPD PE=3 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 8.149e-34
Identity = 70/104 (67.31%), Postives = 87/104 (83.65%), Query Frame = -3
Query:  340 GMAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFGAKAGIVLSKKFVKLVSWYDNEWGYSTRVVDLIVHMAK 651
            GM+ RVPT DVSVVDLTV L+K  +Y++I A +K  +EG L GILGYT++ VVS+DF+ DSRSS+F AKAGI+L+  FVKLVSWYDNE+GYSTRVVDL+ H+AK
Sbjct:  229 GMSMRVPTTDVSVVDLTVNLKKPTTYEDICATMKKAAEGPLAGILGYTDEAVVSSDFLTDSRSSVFDAKAGILLTPTFVKLVSWYDNEYGYSTRVVDLLQHVAK 332          
BLAST of CB304393 vs. ExPASy Swiss-Prot
Match: G3P_MOUSE (Glyceraldehyde-3-phosphate dehydrogenase OS=Mus musculus GN=Gapdh PE=1 SV=2)

HSP 1 Score: 143.665 bits (361), Expect = 8.149e-34
Identity = 72/106 (67.92%), Postives = 82/106 (77.36%), Query Frame = -3
Query:  334 GMAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFGAKAGIVLSKKFVKLVSWYDNEWGYSTRVVDLIVHMAKTQ 651
            GMAFRVPT +VSVVDLT RLEK A YD+IK  +K  SEG LKGILGYTED VVS DF  +S SS F A AGI L+  FVKL+SWYDNE+GYS RVVDL+ +MA  +
Sbjct:  228 GMAFRVPTPNVSVVDLTCRLEKPAKYDDIKKVVKQASEGPLKGILGYTEDQVVSCDFNSNSHSSTFDAGAGIALNDNFVKLISWYDNEYGYSNRVVDLMAYMASKE 333          
BLAST of CB304393 vs. ExPASy Swiss-Prot
Match: G3P_CRIGR (Glyceraldehyde-3-phosphate dehydrogenase OS=Cricetulus griseus GN=GAPDH PE=2 SV=2)

HSP 1 Score: 143.665 bits (361), Expect = 8.149e-34
Identity = 72/106 (67.92%), Postives = 82/106 (77.36%), Query Frame = -3
Query:  334 GMAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFGAKAGIVLSKKFVKLVSWYDNEWGYSTRVVDLIVHMAKTQ 651
            GMAFRVPT +VSVVDLT RLEK A Y++IK  +K  SEG LKGILGYTED VVS DF  DS SS F A AGI L+  FVKL+SWYDNE+GYS RVVDL+ +MA  +
Sbjct:  228 GMAFRVPTPNVSVVDLTCRLEKPAKYEDIKKVVKQASEGPLKGILGYTEDQVVSCDFNSDSHSSTFDAGAGIALNDNFVKLISWYDNEFGYSNRVVDLMAYMASKE 333          
BLAST of CB304393 vs. ExPASy Swiss-Prot
Match: G3PC_CHLRE (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Chlamydomonas reinhardtii GN=GAPC PE=3 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 8.149e-34
Identity = 70/104 (67.31%), Postives = 84/104 (80.77%), Query Frame = -3
Query:  340 GMAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFGAKAGIVLSKKFVKLVSWYDNEWGYSTRVVDLIVHMAK 651
            GMAFRVPT DVSVVDLTV LEK  +Y++I  A+K  SEG++KG+L YT++DVVS+DFV D  S    AKAGI+LS  FVKLV+WYDNEWGYS RVVDL +H+AK
Sbjct:  232 GMAFRVPTNDVSVVDLTVTLEKATTYEDIMKALKEASEGEMKGVLAYTDEDVVSSDFVTDPASCTVDAKAGIMLSPTFVKLVAWYDNEWGYSNRVVDLALHVAK 335          
BLAST of CB304393 vs. ExPASy Swiss-Prot
Match: G3P1_CAEEL (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Caenorhabditis elegans GN=gpd-1 PE=1 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 8.149e-34
Identity = 74/103 (71.84%), Postives = 83/103 (80.58%), Query Frame = -3
Query:  343 GMAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFGAKAGIVLSKKFVKLVSWYDNEWGYSTRVVDLIVHMA 651
            GMAFRVPT DVSVVDLTVRLEK AS D+IK  +KA ++G +KGIL YTED VVSTDFV D  SSIF A A I L+  FVKLVSWYDNE+GYS RVVDLI ++A
Sbjct:  236 GMAFRVPTPDVSVVDLTVRLEKPASMDDIKKVVKAAADGPMKGILAYTEDQVVSTDFVSDPHSSIFDAGACISLNPNFVKLVSWYDNEYGYSNRVVDLIGYIA 338          
BLAST of CB304393 vs. ExPASy Swiss-Prot
Match: G3P_MASBA (Glyceraldehyde-3-phosphate dehydrogenase OS=Mastigamoeba balamuthi GN=GAPD PE=2 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.390e-33
Identity = 67/101 (66.34%), Postives = 84/101 (83.17%), Query Frame = -3
Query:  349 GMAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFGAKAGIVLSKKFVKLVSWYDNEWGYSTRVVDLIVH 651
            GM+FRVPT++VSVVDLT  L+  A+Y+EI  A++  + G+LKG+LGYT++ VVS+DFVG+  SSIF AKAGI L K FVKLVSWYDNEWGYS RVVDL++H
Sbjct:  234 GMSFRVPTLNVSVVDLTAELKTPATYEEICNAVREAANGELKGVLGYTDEQVVSSDFVGEPMSSIFDAKAGIALDKTFVKLVSWYDNEWGYSNRVVDLLLH 334          
The following BLAST results are available for this feature:
BLAST of CB304393 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 342
Match NameE-valueIdentityDescription
G3PT_MACFA3.658e-3471.57Glyceraldehyde-3-phosphate dehydrogenase, testis-s... [more]
G3P_RABIT6.239e-3468.87Glyceraldehyde-3-phosphate dehydrogenase OS=Orycto... [more]
G3P3_CAEEL6.239e-3471.84Glyceraldehyde-3-phosphate dehydrogenase 3 OS=Caen... [more]
G3P2_CAEEL6.239e-3471.84Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Caen... [more]
G3P_PICAN8.149e-3467.31Glyceraldehyde-3-phosphate dehydrogenase OS=Pichia... [more]
G3P_MOUSE8.149e-3467.92Glyceraldehyde-3-phosphate dehydrogenase OS=Mus mu... [more]
G3P_CRIGR8.149e-3467.92Glyceraldehyde-3-phosphate dehydrogenase OS=Cricet... [more]
G3PC_CHLRE8.149e-3467.31Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3P1_CAEEL8.149e-3471.84Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Caen... [more]
G3P_MASBA1.390e-3366.34Glyceraldehyde-3-phosphate dehydrogenase OS=Mastig... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionFLAVEDO0001_IIIaR_B10 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0001_IIIaR_B10 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304393 ID=CB304393; Name=CB304393; organism=Citrus sinensis; type=EST; length=653bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTCGCAGCTGAAGAACAGGTCTT
CGATACTAACTAGATGAAAAATTATAAAAGCAAGTTTCCAATAGACAATT
GTTTTCTCGCTAACAAAACATAAGTTGGTTCACCAACTCTTCTTGCATAC
TACAAGGGAAAATCTAAGCACAACCCTGCATGAGCAGGTAAGGCTCTGGA
TAATGTCTTGGAAACAATTTTATTTAAACTCAGACCCTCTACATAGAAAC
ACAAACACCACATTTAGCGCAAAGAAACACCACACTTAGCACAACTAAGC
GTGTTACATACTCAAGCCACGCCGAGTAAGTTACTGGGTCTTCGCCATGT
GGACAATCAAATCCACCACACGAGTACTGTAGCCCCACTCATTGTCATAC
CATGAGACAAGCTTCACAAATTTCTTACTCAAAACAATACCAGCCTTGGC
ACCAAAGATACTTGACCTACTGTCACCAACAAAGTCGGTGGATACCACAT
CATCCTCAGTGTATCCCAAGATACCCTTTAGTTTCCCCTCTGACTCCGCC
TTGATGGCAGCTTTGATTTCATCATAAGAAGCGTCCTTCTCCAGCCTCAC
TGTGAGGTCAACCACTGAGACATCAACAGTGGGTACACGGAAAGCCATAC
CAG
back to top