CB304393

Overview
NameCB304393
Unique NameCB304393
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length653
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2038 contig Csv1_Contig2038:37..689. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304393 vs. ExPASy Swiss-Prot
Match: G3PC_LEIME (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Leishmania mexicana GN=GAPC PE=3 SV=3)

HSP 1 Score: 140.198 bits (352), Expect = 9.009e-33
Identity = 70/101 (69.31%), Postives = 86/101 (85.15%), Query Frame = -3
Query:  349 GMAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFGAKAGIVLSKKFVKLVSWYDNEWGYSTRVVDLIVH 651
            GMAFRVPT +VSVVDLTVRLEK A+Y +I AAIKA +EG++KGILGYT+D+VVS+DF G + +S+F  KAGI L+  FVKLVSWYDNE GYS +V+DLI+H
Sbjct:  227 GMAFRVPTPNVSVVDLTVRLEKPATYKDICAAIKAAAEGEMKGILGYTDDEVVSSDFNGVALTSVFDVKAGISLNDHFVKLVSWYDNETGYSHKVLDLILH 327          
BLAST of CB304393 vs. ExPASy Swiss-Prot
Match: G3P1_SYNY3 (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Synechocystis sp. (strain PCC 6803) GN=gap1 PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 9.009e-33
Identity = 71/103 (68.93%), Postives = 82/103 (79.61%), Query Frame = -3
Query:  343 GMAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFGAKAGIVLSKKFVKLVSWYDNEWGYSTRVVDLIVHMA 651
            GMAFRVPT +VSVVDLT + EK  SY+EI AA+K  +EG+LKGILGYT DDVVS DF  D RSSIF A AGI L+  F K+VSWYDNEWGYS RV+DL++ MA
Sbjct:  231 GMAFRVPTPNVSVVDLTFKTEKATSYEEICAAMKTAAEGELKGILGYTADDVVSMDFRTDPRSSIFDAGAGIGLNSNFFKVVSWYDNEWGYSCRVIDLMLTMA 333          
BLAST of CB304393 vs. ExPASy Swiss-Prot
Match: G3P_LYOSH (Glyceraldehyde-3-phosphate dehydrogenase OS=Lyophyllum shimeji GN=GPD PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.537e-32
Identity = 66/104 (63.46%), Postives = 81/104 (77.88%), Query Frame = -3
Query:  340 GMAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFGAKAGIVLSKKFVKLVSWYDNEWGYSTRVVDLIVHMAK 651
            G++FRVPT+DVSV+DL VRLEK ASY++IK  +K  SEG  KGI+ YTE+ VVS DF+G   SSIF A+AGI L+  FVKL+ WYDNEWGYS RV DL+V  A+
Sbjct:  228 GLSFRVPTIDVSVIDLVVRLEKPASYEDIKKTVKEASEGAYKGIIEYTEEQVVSADFIGHHASSIFDAQAGIQLNPNFVKLIVWYDNEWGYSARVCDLLVFAAE 331          
BLAST of CB304393 vs. ExPASy Swiss-Prot
Match: G3PT_BOVIN (Glyceraldehyde-3-phosphate dehydrogenase, testis-specific OS=Bos taurus GN=GAPDHS PE=2 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.537e-32
Identity = 69/102 (67.65%), Postives = 81/102 (79.41%), Query Frame = -3
Query:  346 GMAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFGAKAGIVLSKKFVKLVSWYDNEWGYSTRVVDLIVHM 651
            GMAFRVPT DVSVVDLT RL +   Y  IK AIKA ++G + GIL YTED+VVSTDF+ D+ SSIF AKAGI L+  FVKL+SWYDNE+GYS RVVDL+ +M
Sbjct:  289 GMAFRVPTPDVSVVDLTCRLAQPTPYSAIKDAIKAAAKGPMAGILAYTEDEVVSTDFLSDTHSSIFDAKAGIALNDNFVKLISWYDNEYGYSNRVVDLVRYM 390          
BLAST of CB304393 vs. ExPASy Swiss-Prot
Match: G3PT_DANRE (Glyceraldehyde 3-phosphate dehydrogenase, testis-specific OS=Danio rerio GN=gapdhs PE=2 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 2.007e-32
Identity = 68/102 (66.67%), Postives = 81/102 (79.41%), Query Frame = -3
Query:  346 GMAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFGAKAGIVLSKKFVKLVSWYDNEWGYSTRVVDLIVHM 651
            GMAFRVP  DVSVVDLT RL + ASY  IK ++K  + G +KGILGYTED VVS+DFVGD+ SSIF A AGI L+  FVKL+SWYDNE+GYS RV DL+++M
Sbjct:  230 GMAFRVPVADVSVVDLTCRLTRPASYANIKESVKKAAHGPMKGILGYTEDSVVSSDFVGDTHSSIFDAGAGISLNDNFVKLISWYDNEFGYSHRVADLLMYM 331          
BLAST of CB304393 vs. ExPASy Swiss-Prot
Match: G3P2_AGABI (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Agaricus bisporus GN=gpd2 PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 2.007e-32
Identity = 64/104 (61.54%), Postives = 84/104 (80.77%), Query Frame = -3
Query:  340 GMAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFGAKAGIVLSKKFVKLVSWYDNEWGYSTRVVDLIVHMAK 651
            G++ RVPT DVSVVDL VRLEK ASY++IK  ++  +EG+ KGI+ YT++DVVSTDF+ D+ S +F AKAGI LS  FVKL++WYDNEWGYS RV +L+ ++AK
Sbjct:  228 GLSMRVPTQDVSVVDLVVRLEKPASYEQIKEVMRKAAEGEYKGIIAYTDEDVVSTDFISDNNSCVFDAKAGIQLSPNFVKLIAWYDNEWGYSRRVCNLLQYVAK 331          
BLAST of CB304393 vs. ExPASy Swiss-Prot
Match: G3P1_ANASP (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Anabaena sp. (strain PCC 7120) GN=gap1 PE=1 SV=3)

HSP 1 Score: 139.043 bits (349), Expect = 2.007e-32
Identity = 69/106 (65.09%), Postives = 82/106 (77.36%), Query Frame = -3
Query:  334 GMAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFGAKAGIVLSKKFVKLVSWYDNEWGYSTRVVDLIVHMAKTQ 651
            GMAFRVPT DVSVVDLT +  K  SY EI AA+K  SEG L GILGYT+++VVSTDF GD+ SSIF A AGI L+  F K+V+WYDNEWGYS RVVDL++ M + +
Sbjct:  233 GMAFRVPTPDVSVVDLTFKTAKATSYKEICAAMKQASEGSLAGILGYTDEEVVSTDFQGDTHSSIFDAGAGIELNSNFFKVVAWYDNEWGYSNRVVDLMLSMVQKE 338          
BLAST of CB304393 vs. ExPASy Swiss-Prot
Match: G3P1_ANAVT (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=gap1 PE=3 SV=4)

HSP 1 Score: 138.658 bits (348), Expect = 2.621e-32
Identity = 69/106 (65.09%), Postives = 82/106 (77.36%), Query Frame = -3
Query:  334 GMAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFGAKAGIVLSKKFVKLVSWYDNEWGYSTRVVDLIVHMAKTQ 651
            GMAFRVPT DVSVVDLT +  K  SY EI AA+K  SEG L GILGYT+++VVSTDF GD+ SSIF A AGI L+  F K+V+WYDNEWGYS RVVDL++ M + +
Sbjct:  233 GMAFRVPTPDVSVVDLTFKTAKATSYKEICAAMKQASEGSLAGILGYTDEEVVSTDFQGDTHSSIFDAGAGIELNSNFFKVVAWYDNEWGYSNRVVDLMLSMIQKE 338          
BLAST of CB304393 vs. ExPASy Swiss-Prot
Match: G3P_HAEIN (Glyceraldehyde-3-phosphate dehydrogenase OS=Haemophilus influenzae GN=gapA PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 5.840e-32
Identity = 72/107 (67.29%), Postives = 83/107 (77.57%), Query Frame = -3
Query:  346 GMAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGK-----LKGILGYTEDDVVSTDFVGDSRSSIFGAKAGIVLSKKFVKLVSWYDNEWGYSTRVVDLIVHM 651
            GMAFRVPT +VSVVDLTV LEK ASYD IK AIK  +EGK     LKG+LGYTED VVSTDF G + +S+F A AGI L+  FVKLVSWYDNE GYS +V+DL+ H+
Sbjct:  228 GMAFRVPTPNVSVVDLTVNLEKPASYDAIKQAIKDAAEGKTFNGELKGVLGYTEDAVVSTDFNGCALTSVFDADAGIALTDSFVKLVSWYDNETGYSNKVLDLVAHI 334          
BLAST of CB304393 vs. ExPASy Swiss-Prot
Match: G3PT_MOUSE (Glyceraldehyde-3-phosphate dehydrogenase, testis-specific OS=Mus musculus GN=Gapdhs PE=1 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 7.627e-32
Identity = 70/102 (68.63%), Postives = 80/102 (78.43%), Query Frame = -3
Query:  346 GMAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFGAKAGIVLSKKFVKLVSWYDNEWGYSTRVVDLIVHM 651
            GMAFRVPT +VSVVDLT RL K ASY  I  A+KA ++G L GIL YTED VVSTDF G+  SSIF AKAGI L+  FVKLV+WYDNE+GYS RVVDL+ +M
Sbjct:  334 GMAFRVPTPNVSVVDLTCRLAKPASYSAITEAVKAAAKGPLAGILAYTEDQVVSTDFNGNPHSSIFDAKAGIALNDNFVKLVAWYDNEYGYSNRVVDLLRYM 435          
The following BLAST results are available for this feature:
BLAST of CB304393 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 342
Match NameE-valueIdentityDescription
G3PC_LEIME9.009e-3369.31Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3P1_SYNY39.009e-3368.93Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Syne... [more]
G3P_LYOSH1.537e-3263.46Glyceraldehyde-3-phosphate dehydrogenase OS=Lyophy... [more]
G3PT_BOVIN1.537e-3267.65Glyceraldehyde-3-phosphate dehydrogenase, testis-s... [more]
G3PT_DANRE2.007e-3266.67Glyceraldehyde 3-phosphate dehydrogenase, testis-s... [more]
G3P2_AGABI2.007e-3261.54Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Agar... [more]
G3P1_ANASP2.007e-3265.09Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Anab... [more]
G3P1_ANAVT2.621e-3265.09Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Anab... [more]
G3P_HAEIN5.840e-3267.29Glyceraldehyde-3-phosphate dehydrogenase OS=Haemop... [more]
G3PT_MOUSE7.627e-3268.63Glyceraldehyde-3-phosphate dehydrogenase, testis-s... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0001_IIIaR_B10 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0001_IIIaR_B10 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304393 ID=CB304393; Name=CB304393; organism=Citrus sinensis; type=EST; length=653bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTCGCAGCTGAAGAACAGGTCTT
CGATACTAACTAGATGAAAAATTATAAAAGCAAGTTTCCAATAGACAATT
GTTTTCTCGCTAACAAAACATAAGTTGGTTCACCAACTCTTCTTGCATAC
TACAAGGGAAAATCTAAGCACAACCCTGCATGAGCAGGTAAGGCTCTGGA
TAATGTCTTGGAAACAATTTTATTTAAACTCAGACCCTCTACATAGAAAC
ACAAACACCACATTTAGCGCAAAGAAACACCACACTTAGCACAACTAAGC
GTGTTACATACTCAAGCCACGCCGAGTAAGTTACTGGGTCTTCGCCATGT
GGACAATCAAATCCACCACACGAGTACTGTAGCCCCACTCATTGTCATAC
CATGAGACAAGCTTCACAAATTTCTTACTCAAAACAATACCAGCCTTGGC
ACCAAAGATACTTGACCTACTGTCACCAACAAAGTCGGTGGATACCACAT
CATCCTCAGTGTATCCCAAGATACCCTTTAGTTTCCCCTCTGACTCCGCC
TTGATGGCAGCTTTGATTTCATCATAAGAAGCGTCCTTCTCCAGCCTCAC
TGTGAGGTCAACCACTGAGACATCAACAGTGGGTACACGGAAAGCCATAC
CAG
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