CB304393

Overview
NameCB304393
Unique NameCB304393
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length653
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2038 contig Csv1_Contig2038:37..689. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304393 vs. ExPASy Swiss-Prot
Match: G3P_PLESA (Glyceraldehyde-3-phosphate dehydrogenase OS=Pleurotus sajor-caju GN=GPD PE=2 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 9.961e-32
Identity = 69/104 (66.35%), Postives = 83/104 (79.81%), Query Frame = -3
Query:  340 GMAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFGAKAGIVLSKKFVKLVSWYDNEWGYSTRVVDLIVHMAK 651
            G++FRVPT+DVSVVDL VRLEK A Y EI AAIK  SE   KGILG+T D VVSTDFVG + SSIF + AGI L+  FVKL++WYDNE+GYS RVVDL+ ++A+
Sbjct:  227 GLSFRVPTLDVSVVDLVVRLEKPADYKEIVAAIKEASETTHKGILGFTSDSVVSTDFVGSTDSSIFDSTAGIQLNPNFVKLIAWYDNEYGYSRRVVDLLKYVAE 330          
BLAST of CB304393 vs. ExPASy Swiss-Prot
Match: G3P_ONCVO (Glyceraldehyde 3-phosphate-dehydrogenase OS=Onchocerca volvulus PE=2 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 9.961e-32
Identity = 71/103 (68.93%), Postives = 81/103 (78.64%), Query Frame = -3
Query:  343 GMAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFGAKAGIVLSKKFVKLVSWYDNEWGYSTRVVDLIVHMA 651
            GMA RVPT DVSVVDLT RL+K AS DEIKAA+K  + G +KGIL YTED VVS+DFVGD  SSIF A A I L+  FVKL++WYDNE+GYS RVVDLI + A
Sbjct:  235 GMASRVPTPDVSVVDLTCRLQKGASMDEIKAAVKEAAAGPMKGILEYTEDQVVSSDFVGDPHSSIFDALACISLNPNFVKLIAWYDNEYGYSNRVVDLISYNA 337          
BLAST of CB304393 vs. ExPASy Swiss-Prot
Match: G3P_MELGA (Glyceraldehyde-3-phosphate dehydrogenase (Fragment) OS=Meleagris gallopavo GN=GAPDH PE=2 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.301e-31
Identity = 69/96 (71.88%), Postives = 76/96 (79.17%), Query Frame = -3
Query:  364 GMAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFGAKAGIVLSKKFVKLVSWYDNEWGYSTRVV 651
            GMAF VPT +VSVVDLT RLEK A YD+IK  +KA ++G LKGILGYTED VVS DF GDS SS F A AGI L+  FVKLVSWYDNE+GYS RVV
Sbjct:  139 GMAFHVPTPNVSVVDLTCRLEKPAKYDDIKRVVKAAADGPLKGILGYTEDQVVSCDFNGDSHSSTFDAGAGIALNDHFVKLVSWYDNEFGYSNRVV 234          
BLAST of CB304393 vs. ExPASy Swiss-Prot
Match: G3P_BRUMA (Glyceraldehyde-3-phosphate dehydrogenase OS=Brugia malayi GN=G3PD PE=2 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.301e-31
Identity = 69/103 (66.99%), Postives = 82/103 (79.61%), Query Frame = -3
Query:  343 GMAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFGAKAGIVLSKKFVKLVSWYDNEWGYSTRVVDLIVHMA 651
            GMA RVPT DVSVVDLT RL+K A+ DEIKAA+K  + G +KGIL YTED VVSTDF GD+ SSIF + A I L+  FVKL++WYDNE+GYS RVVDLI ++A
Sbjct:  235 GMANRVPTPDVSVVDLTCRLQKGATMDEIKAAVKEAANGPMKGILEYTEDQVVSTDFTGDTHSSIFDSLACISLNPNFVKLIAWYDNEYGYSNRVVDLISYIA 337          
BLAST of CB304393 vs. ExPASy Swiss-Prot
Match: G3PC_SCEVA (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic (Fragment) OS=Scenedesmus vacuolatus GN=GapC PE=2 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 2.898e-31
Identity = 68/90 (75.56%), Postives = 74/90 (82.22%), Query Frame = -3
Query:  382 GMAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFGAKAGIVLSKKFVKLVSWYDNEWG 651
            GMAFRVPT DVSVVDLT  LEK A Y++I AA+KA SEG +KGILGYTEDDVVS+DFV D  SS   AKAGI+LS  FVKLVSWYDNEWG
Sbjct:  223 GMAFRVPTQDVSVVDLTCILEKPAKYEDIMAALKAASEGPMKGILGYTEDDVVSSDFVSDPASSTVDAKAGIMLSPTFVKLVSWYDNEWG 312          
BLAST of CB304393 vs. ExPASy Swiss-Prot
Match: G3P_BUCAP (Glyceraldehyde-3-phosphate dehydrogenase OS=Buchnera aphidicola subsp. Schizaphis graminum GN=gapA PE=3 SV=2)

HSP 1 Score: 133.65 bits (335), Expect = 8.432e-31
Identity = 65/99 (65.66%), Postives = 81/99 (81.82%), Query Frame = -3
Query:  355 GMAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFGAKAGIVLSKKFVKLVSWYDNEWGYSTRVVDLI 651
            G+AFRVPT +VSVVDLTVR +K A+Y+EI   +K  SE K+KGILGYTED+VVSTDF G   +SIF AKAG+ L+K F KL+SWYDNE GYS++V+DL+
Sbjct:  228 GIAFRVPTANVSVVDLTVRYKKTATYNEICEVVKNASEQKMKGILGYTEDEVVSTDFNGKELTSIFDAKAGLSLNKNFAKLISWYDNETGYSSKVLDLV 326          
BLAST of CB304393 vs. ExPASy Swiss-Prot
Match: G3PC_TRYBB (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Trypanosoma brucei brucei PE=1 SV=3)

HSP 1 Score: 133.65 bits (335), Expect = 8.432e-31
Identity = 67/104 (64.42%), Postives = 83/104 (79.81%), Query Frame = -3
Query:  340 GMAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFGAKAGIVLSKKFVKLVSWYDNEWGYSTRVVDLIVHMAK 651
            GMAFRVPT +VSVVDLTVRLE+ A+Y +I  AIKA SEG+LKGILGY ++++VS+D  G   +S+F A+AGI L+  FVKLVSWYDNE GYS +V DLI H+ K
Sbjct:  228 GMAFRVPTPNVSVVDLTVRLERPATYKQICDAIKAASEGELKGILGYVDEEIVSSDINGIPLTSVFDARAGISLNDNFVKLVSWYDNETGYSNKVHDLIAHITK 331          
BLAST of CB304393 vs. ExPASy Swiss-Prot
Match: G3P_MESAU (Glyceraldehyde-3-phosphate dehydrogenase (Fragment) OS=Mesocricetus auratus GN=GAPDH PE=2 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.101e-30
Identity = 67/95 (70.53%), Postives = 74/95 (77.89%), Query Frame = -3
Query:  367 GMAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFGAKAGIVLSKKFVKLVSWYDNEWGYSTRV 651
            GMAFRVPT +VSVVDLT RLEK A Y++IK  +K  SEG LKGILGYTED VVS DF  DS SS F A AGI L+  FVKL+SWYDNE+GYS RV
Sbjct:  218 GMAFRVPTPNVSVVDLTCRLEKAAKYEDIKKVVKQASEGPLKGILGYTEDQVVSCDFKSDSHSSTFDAGAGIALNDNFVKLISWYDNEFGYSNRV 312          
BLAST of CB304393 vs. ExPASy Swiss-Prot
Match: G3P_BACFR (Glyceraldehyde-3-phosphate dehydrogenase OS=Bacteroides fragilis GN=gap PE=3 SV=2)

HSP 1 Score: 133.265 bits (334), Expect = 1.101e-30
Identity = 67/98 (68.37%), Postives = 78/98 (79.59%), Query Frame = -3
Query:  358 GMAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFGAKAGIVLSKKFVKLVSWYDNEWGYSTRVVDL 651
            GMAFRVPT DVSVVDLTV LEK A+  EI AA+K  SEG+LKGILGYTED VVSTDF G + +SI+ +KAGI L   F K+VSWYDNEWGYS +V ++
Sbjct:  229 GMAFRVPTSDVSVVDLTVVLEKAATMAEINAAMKEASEGELKGILGYTEDAVVSTDFRGCANTSIYDSKAGISLDSNFAKVVSWYDNEWGYSNKVCEM 326          
BLAST of CB304393 vs. ExPASy Swiss-Prot
Match: G3P_ONCMY (Glyceraldehyde-3-phosphate dehydrogenase OS=Oncorhynchus mykiss GN=gapdh PE=2 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 2.453e-30
Identity = 63/102 (61.76%), Postives = 79/102 (77.45%), Query Frame = -3
Query:  346 GMAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFGAKAGIVLSKKFVKLVSWYDNEWGYSTRVVDLIVHM 651
            GMAFRVP  DVSVV+LT RL +  SY EIK A+K  +EG +KG +GYTE  VVS+DF+GD+ SS+F A AGI  +  FVKL+SWYDNE+GYS RV DL+++M
Sbjct:  230 GMAFRVPVADVSVVELTCRLSRPGSYAEIKGAVKKAAEGPMKGYVGYTEYSVVSSDFIGDTHSSMFDAGAGISFNDNFVKLISWYDNEFGYSHRVADLLLYM 331          
The following BLAST results are available for this feature:
BLAST of CB304393 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 342
Match NameE-valueIdentityDescription
G3P_PLESA9.961e-3266.35Glyceraldehyde-3-phosphate dehydrogenase OS=Pleuro... [more]
G3P_ONCVO9.961e-3268.93Glyceraldehyde 3-phosphate-dehydrogenase OS=Onchoc... [more]
G3P_MELGA1.301e-3171.88Glyceraldehyde-3-phosphate dehydrogenase (Fragment... [more]
G3P_BRUMA1.301e-3166.99Glyceraldehyde-3-phosphate dehydrogenase OS=Brugia... [more]
G3PC_SCEVA2.898e-3175.56Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3P_BUCAP8.432e-3165.66Glyceraldehyde-3-phosphate dehydrogenase OS=Buchne... [more]
G3PC_TRYBB8.432e-3164.42Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3P_MESAU1.101e-3070.53Glyceraldehyde-3-phosphate dehydrogenase (Fragment... [more]
G3P_BACFR1.101e-3068.37Glyceraldehyde-3-phosphate dehydrogenase OS=Bacter... [more]
G3P_ONCMY2.453e-3061.76Glyceraldehyde-3-phosphate dehydrogenase OS=Oncorh... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0001_IIIaR_B10 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0001_IIIaR_B10 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304393 ID=CB304393; Name=CB304393; organism=Citrus sinensis; type=EST; length=653bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTCGCAGCTGAAGAACAGGTCTT
CGATACTAACTAGATGAAAAATTATAAAAGCAAGTTTCCAATAGACAATT
GTTTTCTCGCTAACAAAACATAAGTTGGTTCACCAACTCTTCTTGCATAC
TACAAGGGAAAATCTAAGCACAACCCTGCATGAGCAGGTAAGGCTCTGGA
TAATGTCTTGGAAACAATTTTATTTAAACTCAGACCCTCTACATAGAAAC
ACAAACACCACATTTAGCGCAAAGAAACACCACACTTAGCACAACTAAGC
GTGTTACATACTCAAGCCACGCCGAGTAAGTTACTGGGTCTTCGCCATGT
GGACAATCAAATCCACCACACGAGTACTGTAGCCCCACTCATTGTCATAC
CATGAGACAAGCTTCACAAATTTCTTACTCAAAACAATACCAGCCTTGGC
ACCAAAGATACTTGACCTACTGTCACCAACAAAGTCGGTGGATACCACAT
CATCCTCAGTGTATCCCAAGATACCCTTTAGTTTCCCCTCTGACTCCGCC
TTGATGGCAGCTTTGATTTCATCATAAGAAGCGTCCTTCTCCAGCCTCAC
TGTGAGGTCAACCACTGAGACATCAACAGTGGGTACACGGAAAGCCATAC
CAG
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