CB304393

Overview
NameCB304393
Unique NameCB304393
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length653
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB304393 vs. ExPASy Swiss-Prot
Match: G3P_CHLPN (Glyceraldehyde-3-phosphate dehydrogenase OS=Chlamydia pneumoniae GN=gap PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 3.204e-30
Identity = 65/104 (62.50%), Postives = 81/104 (77.88%), Query Frame = -3
Query:  340 GMAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFGAKAGIVLSKKFVKLVSWYDNEWGYSTRVVDLIVHMAK 651
            GMAFRVP  DVSVVDLTVRL+K  +YD+I  A+K  SE  LKGIL YT++ VVS+DF+G   SSIF A AGI L+ +F KLV+WYDNE GY+TR+VDL+ ++ K
Sbjct:  229 GMAFRVPIEDVSVVDLTVRLDKSTTYDDICKAMKQASETDLKGILDYTDEQVVSSDFIGSEYSSIFDALAGIALNDRFFKLVAWYDNETGYATRIVDLLEYVEK 332          
BLAST of CB304393 vs. ExPASy Swiss-Prot
Match: G3P_ECHMU (Glyceraldehyde-3-phosphate dehydrogenase OS=Echinococcus multilocularis PE=2 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 4.185e-30
Identity = 69/105 (65.71%), Postives = 82/105 (78.10%), Query Frame = -3
Query:  340 GMAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGK-LKGILGYTEDDVVSTDFVGDSRSSIFGAKAGIVLSKKFVKLVSWYDNEWGYSTRVVDLIVHMAK 651
            GMAFRVPT +VSVVDLT +L K A+YD+IKAA+K  SE   LK IL YTED VVSTDF+  + SS F A+AGI L+  FVKL++WYDNE+GYS RVVDLI +M K
Sbjct:  229 GMAFRVPTPNVSVVDLTCKLSKPATYDQIKAAVKRASESSALKRILEYTEDQVVSTDFLSTTCSSTFDARAGIALNDTFVKLIAWYDNEFGYSCRVVDLISYMFK 333          
BLAST of CB304393 vs. ExPASy Swiss-Prot
Match: G3P1_GLORO (Glyceraldehyde-3-phosphate dehydrogenase 1 (Fragment) OS=Globodera rostochiensis GN=GPD-1 PE=2 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 5.466e-30
Identity = 68/89 (76.40%), Postives = 74/89 (83.15%), Query Frame = -3
Query:  385 GMAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFGAKAGIVLSKKFVKLVSWYDNEW 651
            GMAFRVPT +VSVVDLT RLEK AS D IKAA+K  +EG LKGILGYTED VVSTDF+GDSRSSIF A A I L+  FVKLVSWYDNE+
Sbjct:  236 GMAFRVPTPNVSVVDLTARLEKPASLDAIKAAVKKAAEGNLKGILGYTEDQVVSTDFLGDSRSSIFDAGACISLNPHFVKLVSWYDNEF 324          
BLAST of CB304393 vs. ExPASy Swiss-Prot
Match: G3P_BUCAI (Glyceraldehyde-3-phosphate dehydrogenase OS=Buchnera aphidicola subsp. Acyrthosiphon pisum GN=gapA PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 9.323e-30
Identity = 63/104 (60.58%), Postives = 84/104 (80.77%), Query Frame = -3
Query:  340 GMAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFGAKAGIVLSKKFVKLVSWYDNEWGYSTRVVDLIVHMAK 651
            GMAFRVP  +VSVVDLTVR +K A+Y EI   I+  S+ ++KGI+GYTED+VVSTDF G+  +SIF AKAG+ L+K FVKL++WYDNE GYS++V+DL+  ++K
Sbjct:  228 GMAFRVPVSNVSVVDLTVRYKKSATYSEICQKIQQASQKEMKGIMGYTEDEVVSTDFNGEELTSIFDAKAGLSLNKNFVKLIAWYDNETGYSSKVLDLVSLVSK 331          
BLAST of CB304393 vs. ExPASy Swiss-Prot
Match: G3P2_DROSU (Glyceraldehyde-3-phosphate dehydrogenase 2 (Fragment) OS=Drosophila subobscura GN=Gapdh2 PE=2 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.590e-29
Identity = 63/88 (71.59%), Postives = 75/88 (85.23%), Query Frame = -3
Query:  388 GMAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFGAKAGIVLSKKFVKLVSWYDNE 651
            GMAFRVPT +VSVVDLTVRL K ASYDEIKA ++  + G LKGILGYT+++VVSTDF+ D+ SS+F AKAGI L+ KFVKL+SWYDNE
Sbjct:  217 GMAFRVPTPNVSVVDLTVRLGKGASYDEIKAKVQEAANGPLKGILGYTDEEVVSTDFLSDTHSSVFDAKAGISLNDKFVKLISWYDNE 304          
BLAST of CB304393 vs. ExPASy Swiss-Prot
Match: G3P_COCIM (Glyceraldehyde-3-phosphate dehydrogenase OS=Coccidioides immitis GN=GPD PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.077e-29
Identity = 61/103 (59.22%), Postives = 79/103 (76.70%), Query Frame = -3
Query:  343 GMAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFGAKAGIVLSKKFVKLVSWYDNEWGYSTRVVDLIVHMA 651
            GM+ RVPT +VSVVDLT R +K  +YD+IK A+K  S  +LKGI+ Y+ED +VS+D  GD+ S IF A AGI L+  F+KLV+WYDNEWGYS RV+DLI ++A
Sbjct:  229 GMSMRVPTSNVSVVDLTCRTDKSVTYDQIKEAMKKASANELKGIMSYSEDALVSSDLNGDTHSCIFDATAGIALNDHFIKLVAWYDNEWGYSRRVIDLIAYIA 331          
BLAST of CB304393 vs. ExPASy Swiss-Prot
Match: G3P_COCP7 (Glyceraldehyde-3-phosphate dehydrogenase OS=Coccidioides posadasii (strain C735) GN=GPD PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 3.543e-29
Identity = 61/103 (59.22%), Postives = 78/103 (75.73%), Query Frame = -3
Query:  343 GMAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFGAKAGIVLSKKFVKLVSWYDNEWGYSTRVVDLIVHMA 651
            GM+ RVPT +VSVVDLT R +K  +YD+IK A+K  S  +LKGI+ Y+ED +VS+D  GD  S IF A AGI L+  F+KLV+WYDNEWGYS RV+DLI ++A
Sbjct:  229 GMSMRVPTSNVSVVDLTCRTDKSVTYDQIKEAMKKASANELKGIMSYSEDALVSSDLNGDPHSCIFDATAGIALNDHFIKLVAWYDNEWGYSRRVIDLIAYIA 331          
BLAST of CB304393 vs. ExPASy Swiss-Prot
Match: G3PG_TRYCR (Glyceraldehyde-3-phosphate dehydrogenase, glycosomal OS=Trypanosoma cruzi PE=1 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.346e-28
Identity = 62/107 (57.94%), Postives = 80/107 (74.77%), Query Frame = -3
Query:  343 GMAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFGAKA----GIVLSKKFVKLVSWYDNEWGYSTRVVDLIVHMA 651
            GM+FRVPT DVSVVDLT    +D S  EI AA+K  S+  +KGILGYT++++VS DF+ D+RSSI+ +KA     +   ++F K+VSWYDNEWGYS RVVDL+ HMA
Sbjct:  245 GMSFRVPTPDVSVVDLTFTAARDTSIQEIDAALKRASKTYMKGILGYTDEELVSADFINDNRSSIYDSKATLQNNLPKERRFFKIVSWYDNEWGYSHRVVDLVRHMA 351          
BLAST of CB304393 vs. ExPASy Swiss-Prot
Match: G3PG_TRYBB (Glyceraldehyde-3-phosphate dehydrogenase, glycosomal OS=Trypanosoma brucei brucei PE=1 SV=3)

HSP 1 Score: 125.561 bits (314), Expect = 2.296e-28
Identity = 63/107 (58.88%), Postives = 79/107 (73.83%), Query Frame = -3
Query:  343 GMAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFGAKA----GIVLSKKFVKLVSWYDNEWGYSTRVVDLIVHMA 651
            GMAFRVPT DVSVVDLT    +D S  EI AA+K  S+  +K ILGYT++++VS DF+ DSRSSI+ +KA     +   ++F K+VSWYDNEWGYS RVVDL+ HMA
Sbjct:  245 GMAFRVPTADVSVVDLTFIATRDTSIKEIDAALKRASKTYMKNILGYTDEELVSADFISDSRSSIYDSKATLQNNLPNERRFFKIVSWYDNEWGYSHRVVDLVRHMA 351          
BLAST of CB304393 vs. ExPASy Swiss-Prot
Match: G3P1_GIALA (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Giardia lamblia GN=GAP1 PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 2.296e-28
Identity = 61/98 (62.24%), Postives = 79/98 (80.61%), Query Frame = -3
Query:  358 GMAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFGAKAGIVLSKKFVKLVSWYDNEWGYSTRVVDL 651
            GMAFRVP  DVSVVDLT  LEKDA+YDEI A IK  SE +LKGI+ YT +DVVS+DF+  + +  F +KAGI+L+ +FVKLV+WYDNE+GY+ ++V+L
Sbjct:  230 GMAFRVPVPDVSVVDLTCTLEKDATYDEICAEIKRGSENELKGIMTYTNEDVVSSDFLSTTSTCNFDSKAGIMLNSRFVKLVAWYDNEFGYANKLVEL 327          
The following BLAST results are available for this feature:
BLAST of CB304393 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 342
Match NameE-valueIdentityDescription
G3P_CHLPN3.204e-3062.50Glyceraldehyde-3-phosphate dehydrogenase OS=Chlamy... [more]
G3P_ECHMU4.185e-3065.71Glyceraldehyde-3-phosphate dehydrogenase OS=Echino... [more]
G3P1_GLORO5.466e-3076.40Glyceraldehyde-3-phosphate dehydrogenase 1 (Fragme... [more]
G3P_BUCAI9.323e-3060.58Glyceraldehyde-3-phosphate dehydrogenase OS=Buchne... [more]
G3P2_DROSU1.590e-2971.59Glyceraldehyde-3-phosphate dehydrogenase 2 (Fragme... [more]
G3P_COCIM2.077e-2959.22Glyceraldehyde-3-phosphate dehydrogenase OS=Coccid... [more]
G3P_COCP73.543e-2959.22Glyceraldehyde-3-phosphate dehydrogenase OS=Coccid... [more]
G3PG_TRYCR1.346e-2857.94Glyceraldehyde-3-phosphate dehydrogenase, glycosom... [more]
G3PG_TRYBB2.296e-2858.88Glyceraldehyde-3-phosphate dehydrogenase, glycosom... [more]
G3P1_GIALA2.296e-2862.24Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Giar... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0001_IIIaR_B10 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0001_IIIaR_B10 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304393 ID=CB304393; Name=CB304393; organism=Citrus sinensis; type=EST; length=653bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTCGCAGCTGAAGAACAGGTCTT
CGATACTAACTAGATGAAAAATTATAAAAGCAAGTTTCCAATAGACAATT
GTTTTCTCGCTAACAAAACATAAGTTGGTTCACCAACTCTTCTTGCATAC
TACAAGGGAAAATCTAAGCACAACCCTGCATGAGCAGGTAAGGCTCTGGA
TAATGTCTTGGAAACAATTTTATTTAAACTCAGACCCTCTACATAGAAAC
ACAAACACCACATTTAGCGCAAAGAAACACCACACTTAGCACAACTAAGC
GTGTTACATACTCAAGCCACGCCGAGTAAGTTACTGGGTCTTCGCCATGT
GGACAATCAAATCCACCACACGAGTACTGTAGCCCCACTCATTGTCATAC
CATGAGACAAGCTTCACAAATTTCTTACTCAAAACAATACCAGCCTTGGC
ACCAAAGATACTTGACCTACTGTCACCAACAAAGTCGGTGGATACCACAT
CATCCTCAGTGTATCCCAAGATACCCTTTAGTTTCCCCTCTGACTCCGCC
TTGATGGCAGCTTTGATTTCATCATAAGAAGCGTCCTTCTCCAGCCTCAC
TGTGAGGTCAACCACTGAGACATCAACAGTGGGTACACGGAAAGCCATAC
CAG
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