CB304393

Overview
NameCB304393
Unique NameCB304393
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length653
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB304393 vs. ExPASy Swiss-Prot
Match: G3P_CHLTR (Glyceraldehyde-3-phosphate dehydrogenase OS=Chlamydia trachomatis GN=gap PE=3 SV=3)

HSP 1 Score: 116.316 bits (290), Expect = 1.393e-25
Identity = 55/102 (53.92%), Postives = 76/102 (74.51%), Query Frame = -3
Query:  346 GMAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFGAKAGIVLSKKFVKLVSWYDNEWGYSTRVVDLIVHM 651
            GMAFRVP  DVSVVDLTV+L    +Y+ I  A+K  +   +K I+ YTE+ VVS+DF+G   SS+F A+AG+ L+ +F KLV+WYDNE GY+TR+VDL+ ++
Sbjct:  228 GMAFRVPVADVSVVDLTVKLSSATTYEAICEAVKHAANTSMKNIMYYTEEAVVSSDFIGCEYSSVFDAQAGVALNDRFFKLVAWYDNEIGYATRIVDLLEYV 329          
BLAST of CB304393 vs. ExPASy Swiss-Prot
Match: G3P_SEROD (Glyceraldehyde-3-phosphate dehydrogenase (Fragment) OS=Serratia odorifera GN=gap PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.820e-25
Identity = 59/82 (71.95%), Postives = 68/82 (82.93%), Query Frame = -3
Query:  406 GMAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFGAKAGIVLSKKFVKLV 651
            GMAFRVPT +VSVVDLT RLEK ASY E+ AAIK  +EG+LKG+LGYTEDDVVSTDF G+  +S+F AKAGI L+  FVKLV
Sbjct:  213 GMAFRVPTPNVSVVDLTARLEKPASYKEVCAAIKEAAEGELKGVLGYTEDDVVSTDFNGEKLTSVFDAKAGIALNDNFVKLV 294          
BLAST of CB304393 vs. ExPASy Swiss-Prot
Match: G3P_CHLMU (Glyceraldehyde-3-phosphate dehydrogenase OS=Chlamydia muridarum GN=gap PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 4.053e-25
Identity = 52/102 (50.98%), Postives = 76/102 (74.51%), Query Frame = -3
Query:  346 GMAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFGAKAGIVLSKKFVKLVSWYDNEWGYSTRVVDLIVHM 651
            GMAFRVP  DVSVVDLTV+L    +Y+ +  A+K  +   ++ I+ YTE+ VVS+DF+G   SS+F A+AG+ L+ +F KL++WYDNE GY+TR+VDL+ ++
Sbjct:  229 GMAFRVPVADVSVVDLTVKLSSATTYEAVCEAVKHAASTSMRNIMHYTEEAVVSSDFIGCEYSSVFDAQAGVALNDRFFKLIAWYDNEIGYATRIVDLLEYI 330          
BLAST of CB304393 vs. ExPASy Swiss-Prot
Match: G3P_BACST (Glyceraldehyde-3-phosphate dehydrogenase OS=Bacillus stearothermophilus GN=gap PE=1 SV=5)

HSP 1 Score: 114.39 bits (285), Expect = 5.294e-25
Identity = 57/103 (55.34%), Postives = 76/103 (73.79%), Query Frame = -3
Query:  343 GMAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFGAKAGIVLSKKFVKLVSWYDNEWGYSTRVVDLIVHMA 651
            GMA RVPT +VSVVDL   LEK+ + +E+ AA+KA +EG+LKGIL Y+E+ +VS D+ G + SS   A + +V+  K VK+VSWYDNE GYS RVVDL  ++A
Sbjct:  229 GMAMRVPTPNVSVVDLVAELEKEVTVEEVNAALKAAAEGELKGILAYSEEPLVSRDYNGSTVSSTIDALSTMVIDGKMVKVVSWYDNETGYSHRVVDLAAYIA 331          
BLAST of CB304393 vs. ExPASy Swiss-Prot
Match: G3P_SERMA (Glyceraldehyde-3-phosphate dehydrogenase (Fragment) OS=Serratia marcescens GN=gap PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 9.030e-25
Identity = 57/82 (69.51%), Postives = 68/82 (82.93%), Query Frame = -3
Query:  406 GMAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFGAKAGIVLSKKFVKLV 651
            GMAFRVPT +VSVVDLTVRLEK A+Y+EIK A+K  +EG +KG+LGY EDDVVSTDF G+  +S+F AKAGI L+  FVKLV
Sbjct:  213 GMAFRVPTPNVSVVDLTVRLEKPATYEEIKKAMKDAAEGSMKGVLGYVEDDVVSTDFNGEVLTSVFDAKAGIALNDNFVKLV 294          
BLAST of CB304393 vs. ExPASy Swiss-Prot
Match: G3P_LACDT (Glyceraldehyde-3-phosphate dehydrogenase (Fragment) OS=Lactarius deterrimus GN=GPD PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 3.431e-24
Identity = 56/83 (67.47%), Postives = 68/83 (81.93%), Query Frame = -3
Query:  403 GMAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFGAKAGIVLSKKFVKLVS 651
            G+AFRVPT DVSVVDL VRLEK+A+YDEIK A+K  ++G LKGI+ YT+D VVSTDF+G + SSIF A AGI L+K F KL+S
Sbjct:  208 GLAFRVPTNDVSVVDLVVRLEKEATYDEIKLAVKEAADGPLKGIIEYTDDLVVSTDFIGSTASSIFDAGAGIQLNKNFAKLIS 290          
BLAST of CB304393 vs. ExPASy Swiss-Prot
Match: G3P_THEMA (Glyceraldehyde-3-phosphate dehydrogenase OS=Thermotoga maritima GN=gap PE=1 SV=2)

HSP 1 Score: 110.538 bits (275), Expect = 7.645e-24
Identity = 52/104 (50.00%), Postives = 73/104 (70.19%), Query Frame = -3
Query:  340 GMAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFGAKAGIVLSKKFVKLVSWYDNEWGYSTRVVDLIVHMAK 651
            GMA RVPT D S+ DLTV +EK+ + +E+ A +K  +EG+LKGI+GY ++ +VS+D +G + S IF A    V+  K VK+ SWYDNE+GYS RVVD +  + K
Sbjct:  229 GMAIRVPTPDGSITDLTVLVEKETTVEEVNAVMKEATEGRLKGIIGYNDEPIVSSDIIGTTFSGIFDATITNVIGGKLVKVASWYDNEYGYSNRVVDTLELLLK 332          
BLAST of CB304393 vs. ExPASy Swiss-Prot
Match: G3P1_BACCE (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Bacillus cereus GN=gap1 PE=1 SV=3)

HSP 1 Score: 109.768 bits (273), Expect = 1.304e-23
Identity = 54/102 (52.94%), Postives = 74/102 (72.55%), Query Frame = -3
Query:  346 GMAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFGAKAGIVLSKKFVKLVSWYDNEWGYSTRVVDLIVHM 651
            G A RVPT +VS+VDL V L+K+ + +E+ AA KA +EG+LKGILGY+E+ +VS D+ G + SS   A + +V+    VK++SWYDNE GYS RVVDL  +M
Sbjct:  228 GGAVRVPTANVSLVDLVVELDKEVTVEEVNAAFKAAAEGELKGILGYSEEPLVSIDYNGCTASSTIDALSTMVMEGNMVKVLSWYDNETGYSNRVVDLAAYM 329          
BLAST of CB304393 vs. ExPASy Swiss-Prot
Match: G3P1_BACSU (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Bacillus subtilis GN=gapA PE=1 SV=2)

HSP 1 Score: 106.686 bits (265), Expect = 1.104e-22
Identity = 52/104 (50.00%), Postives = 73/104 (70.19%), Query Frame = -3
Query:  340 GMAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFGAKAGIVLSKKFVKLVSWYDNEWGYSTRVVDLIVHMAK 651
            G A RVPT +VS+VDL   L ++ + +E+ AA+K  +EG LKGILGY+E+ +VS D+ G+  SS   A + +V+    VK++SWYDNE GYS RVVDL  ++AK
Sbjct:  229 GGAMRVPTPNVSLVDLVAELNQEVTAEEVNAALKEAAEGDLKGILGYSEEPLVSGDYNGNKNSSTIDALSTMVMEGSMVKVISWYDNESGYSNRVVDLAAYIAK 332          
BLAST of CB304393 vs. ExPASy Swiss-Prot
Match: G3P_TREPA (Glyceraldehyde-3-phosphate dehydrogenase OS=Treponema pallidum GN=gap PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.442e-22
Identity = 53/103 (51.46%), Postives = 71/103 (68.93%), Query Frame = -3
Query:  355 GMAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFGAKA----GIVLSKKFVKLVSWYDNEWGYSTRVVDLI 651
            GMAFRVPT   SVVDLT R EK+ S  ++ A +K  SE  L+G+L Y ++D+VS D + +  SSI+ ++A     +   K+F K+VSWYDNEWGYS RVVDL+
Sbjct:  241 GMAFRVPTPTGSVVDLTFRTEKETSVADLNAMLKKASESYLRGVLQYCDEDIVSADVIHNQYSSIYDSRATLQNNLPNEKRFFKVVSWYDNEWGYSNRVVDLL 343          
The following BLAST results are available for this feature:
BLAST of CB304393 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 342
Match NameE-valueIdentityDescription
G3P_CHLTR1.393e-2553.92Glyceraldehyde-3-phosphate dehydrogenase OS=Chlamy... [more]
G3P_SEROD1.820e-2571.95Glyceraldehyde-3-phosphate dehydrogenase (Fragment... [more]
G3P_CHLMU4.053e-2550.98Glyceraldehyde-3-phosphate dehydrogenase OS=Chlamy... [more]
G3P_BACST5.294e-2555.34Glyceraldehyde-3-phosphate dehydrogenase OS=Bacill... [more]
G3P_SERMA9.030e-2569.51Glyceraldehyde-3-phosphate dehydrogenase (Fragment... [more]
G3P_LACDT3.431e-2467.47Glyceraldehyde-3-phosphate dehydrogenase (Fragment... [more]
G3P_THEMA7.645e-2450.00Glyceraldehyde-3-phosphate dehydrogenase OS=Thermo... [more]
G3P1_BACCE1.304e-2352.94Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Baci... [more]
G3P1_BACSU1.104e-2250.00Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Baci... [more]
G3P_TREPA1.442e-2251.46Glyceraldehyde-3-phosphate dehydrogenase OS=Trepon... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0001_IIIaR_B10 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0001_IIIaR_B10 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304393 ID=CB304393; Name=CB304393; organism=Citrus sinensis; type=EST; length=653bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTCGCAGCTGAAGAACAGGTCTT
CGATACTAACTAGATGAAAAATTATAAAAGCAAGTTTCCAATAGACAATT
GTTTTCTCGCTAACAAAACATAAGTTGGTTCACCAACTCTTCTTGCATAC
TACAAGGGAAAATCTAAGCACAACCCTGCATGAGCAGGTAAGGCTCTGGA
TAATGTCTTGGAAACAATTTTATTTAAACTCAGACCCTCTACATAGAAAC
ACAAACACCACATTTAGCGCAAAGAAACACCACACTTAGCACAACTAAGC
GTGTTACATACTCAAGCCACGCCGAGTAAGTTACTGGGTCTTCGCCATGT
GGACAATCAAATCCACCACACGAGTACTGTAGCCCCACTCATTGTCATAC
CATGAGACAAGCTTCACAAATTTCTTACTCAAAACAATACCAGCCTTGGC
ACCAAAGATACTTGACCTACTGTCACCAACAAAGTCGGTGGATACCACAT
CATCCTCAGTGTATCCCAAGATACCCTTTAGTTTCCCCTCTGACTCCGCC
TTGATGGCAGCTTTGATTTCATCATAAGAAGCGTCCTTCTCCAGCCTCAC
TGTGAGGTCAACCACTGAGACATCAACAGTGGGTACACGGAAAGCCATAC
CAG
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