CB304393

Overview
NameCB304393
Unique NameCB304393
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length653
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB304393 vs. ExPASy Swiss-Prot
Match: G3P_AMAMU (Glyceraldehyde-3-phosphate dehydrogenase (Fragment) OS=Amanita muscaria GN=GPD PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 7.155e-22
Identity = 50/83 (60.24%), Postives = 67/83 (80.72%), Query Frame = -3
Query:  403 GMAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFGAKAGIVLSKKFVKLVS 651
            G++FRVPT+DVSVVDL VR+E+ A+YDEIK A +  S+G LKGI+ YT++ VVSTDF+G + SSIF + AGI L+  FVKL++
Sbjct:  207 GLSFRVPTLDVSVVDLVVRIEQSATYDEIKEAFREASKGSLKGIIEYTDEHVVSTDFIGHTASSIFDSLAGIQLNANFVKLIA 289          
BLAST of CB304393 vs. ExPASy Swiss-Prot
Match: G3P_THEAQ (Glyceraldehyde-3-phosphate dehydrogenase OS=Thermus aquaticus GN=gap PE=1 SV=2)

HSP 1 Score: 103.219 bits (256), Expect = 1.220e-21
Identity = 51/99 (51.52%), Postives = 67/99 (67.68%), Query Frame = -3
Query:  355 GMAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFGAKAGIVLSKKFVKLVSWYDNEWGYSTRVVDLI 651
            GMA RVPT   S+ D+T  L+++ + +E+ AA+KA +EG LKGIL YTED++V  D V D  SSI  AK    L    VK+ +WYDNEWGY+ RV DL+
Sbjct:  226 GMALRVPTATGSISDITALLKREVTAEEVNAALKAAAEGPLKGILAYTEDEIVLQDIVMDPHSSIVDAKLTKALG-NMVKVFAWYDNEWGYANRVADLV 323          
BLAST of CB304393 vs. ExPASy Swiss-Prot
Match: G3P2_ANAVT (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=gap2 PE=3 SV=2)

HSP 1 Score: 102.834 bits (255), Expect = 1.594e-21
Identity = 50/98 (51.02%), Postives = 68/98 (69.39%), Query Frame = -3
Query:  358 GMAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFGAKAGIVLSKKFVKLVSWYDNEWGYSTRVVDL 651
            G+A RVPT +VS+VD  V++EK    +E+  A+K  SEG LKGIL Y+E  +VS+D+ G   SSI  A   +V+    VK+++WYDNEWGYS RV+DL
Sbjct:  231 GVALRVPTPNVSMVDFVVQVEKRTITEEVNQALKDASEGPLKGILDYSELQLVSSDYQGTDASSIVDASLTLVMGNDLVKVMAWYDNEWGYSQRVLDL 328          
BLAST of CB304393 vs. ExPASy Swiss-Prot
Match: G3P2_ANASP (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Anabaena sp. (strain PCC 7120) GN=gap2 PE=1 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.594e-21
Identity = 50/98 (51.02%), Postives = 68/98 (69.39%), Query Frame = -3
Query:  358 GMAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFGAKAGIVLSKKFVKLVSWYDNEWGYSTRVVDL 651
            G+A RVPT +VS+VD  V++EK    +E+  A+K  SEG LKGIL Y+E  +VS+D+ G   SSI  A   +V+    VK+++WYDNEWGYS RV+DL
Sbjct:  231 GVALRVPTPNVSMVDFVVQVEKRTITEEVNQALKDASEGPLKGILDYSELQLVSSDYQGTDASSIVDANLTLVMGNDLVKVMAWYDNEWGYSQRVLDL 328          
BLAST of CB304393 vs. ExPASy Swiss-Prot
Match: G3P_MYCTU (Glyceraldehyde-3-phosphate dehydrogenase OS=Mycobacterium tuberculosis GN=gap PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.082e-21
Identity = 56/105 (53.33%), Postives = 69/105 (65.71%), Query Frame = -3
Query:  337 GMAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFGAKAGIVLSKKFVKLVSWYDNEWGYSTRVVDLIVHMAKT 651
            G A RVP    SV DLTV L   AS DEI AA KA +EG+LKGIL Y +  +VS+D V D  SSIF +    V+  +  K+VSWYDNEWGYS R+VDL+  + K+
Sbjct:  235 GYALRVPIPTGSVTDLTVDLSTRASVDEINAAFKAAAEGRLKGILKYYDAPIVSSDIVTDPHSSIFDSGLTKVIDDQ-AKVVSWYDNEWGYSNRLVDLVTLVGKS 338          
BLAST of CB304393 vs. ExPASy Swiss-Prot
Match: G3P_MYCBO (Glyceraldehyde-3-phosphate dehydrogenase OS=Mycobacterium bovis GN=gap PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.082e-21
Identity = 56/105 (53.33%), Postives = 69/105 (65.71%), Query Frame = -3
Query:  337 GMAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFGAKAGIVLSKKFVKLVSWYDNEWGYSTRVVDLIVHMAKT 651
            G A RVP    SV DLTV L   AS DEI AA KA +EG+LKGIL Y +  +VS+D V D  SSIF +    V+  +  K+VSWYDNEWGYS R+VDL+  + K+
Sbjct:  235 GYALRVPIPTGSVTDLTVDLSTRASVDEINAAFKAAAEGRLKGILKYYDAPIVSSDIVTDPHSSIFDSGLTKVIDDQ-AKVVSWYDNEWGYSNRLVDLVTLVGKS 338          
BLAST of CB304393 vs. ExPASy Swiss-Prot
Match: G3P_MYCAV (Glyceraldehyde-3-phosphate dehydrogenase OS=Mycobacterium avium GN=gapA PE=3 SV=3)

HSP 1 Score: 102.449 bits (254), Expect = 2.082e-21
Identity = 54/105 (51.43%), Postives = 70/105 (66.67%), Query Frame = -3
Query:  337 GMAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFGAKAGIVLSKKFVKLVSWYDNEWGYSTRVVDLIVHMAKT 651
            G A RVP    SV DLT  L+K AS ++I AA KA +EG+LKGIL Y +  +VS+D V D  SSIF +    V+  +  K+VSWYDNEWGYS R+VDL+  + K+
Sbjct:  235 GYALRVPIPTGSVTDLTAELKKPASVEDINAAFKAAAEGRLKGILKYYDAPIVSSDIVTDPHSSIFDSGLTKVIDNQ-AKVVSWYDNEWGYSNRLVDLVALVGKS 338          
BLAST of CB304393 vs. ExPASy Swiss-Prot
Match: G3P_BACME (Glyceraldehyde-3-phosphate dehydrogenase OS=Bacillus megaterium GN=gap PE=3 SV=2)

HSP 1 Score: 102.449 bits (254), Expect = 2.082e-21
Identity = 50/103 (48.54%), Postives = 72/103 (69.90%), Query Frame = -3
Query:  343 GMAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFGAKAGIVLSKKFVKLVSWYDNEWGYSTRVVDLIVHMA 651
            G A RVPT +VS+VDL   L+K+ + +++  A+K  +EG LKGILGY+E+ +VS D+ G+  SS   A + +V+    VK++SWYDNE GYS RVVDL  ++A
Sbjct:  229 GGAMRVPTPNVSLVDLVAELDKEVTVEDVNNALKEAAEGDLKGILGYSEEPLVSGDYNGNINSSTIDALSTMVMEGNMVKVISWYDNESGYSNRVVDLAQYIA 331          
BLAST of CB304393 vs. ExPASy Swiss-Prot
Match: G3P_BORBU (Glyceraldehyde-3-phosphate dehydrogenase OS=Borrelia burgdorferi GN=gap PE=1 SV=3)

HSP 1 Score: 101.679 bits (252), Expect = 3.551e-21
Identity = 55/106 (51.89%), Postives = 73/106 (68.87%), Query Frame = -3
Query:  340 GMAFRVPTVDVSVVDLTVRLEK-DASYDEIKAAIKAESEG-KLKGILGYTEDDVVSTDFVGDSRSSIFGAKAGIVLSKKFVKLVSWYDNEWGYSTRVVDLIVHMAK 651
            G + RVP    S+VDLTV+L+K D + +EI + ++  SE  +LKGILGYTED +VS+D  G+S SSI      +VL   F K++SWYDNE+GYSTRVVDL   + K
Sbjct:  230 GTSMRVPVPTGSIVDLTVQLKKKDVTKEEINSVLRKASETPELKGILGYTEDPIVSSDIKGNSHSSIVDGLETMVLENGFAKILSWYDNEFGYSTRVVDLAQKLVK 335          
BLAST of CB304393 vs. ExPASy Swiss-Prot
Match: G3P_BOLED (Glyceraldehyde-3-phosphate dehydrogenase (Fragment) OS=Boletus edulis GN=GPD PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 3.551e-21
Identity = 54/84 (64.29%), Postives = 64/84 (76.19%), Query Frame = -3
Query:  403 GMAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEG-KLKGILGYTEDDVVSTDFVGDSRSSIFGAKAGIVLSKKFVKLVS 651
            G+AFRVPT+DVSVVDL VRL K  SY+EIK A K  SE  +LKGI+ YTED VVSTDF+G   SSIF A  GI+L+  FVKL++
Sbjct:  208 GLAFRVPTLDVSVVDLVVRLAKPTSYEEIKTAFKEASESSELKGIVAYTEDAVVSTDFLGHHASSIFDATGGIMLNDSFVKLIA 291          
The following BLAST results are available for this feature:
BLAST of CB304393 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 342
Match NameE-valueIdentityDescription
G3P_AMAMU7.155e-2260.24Glyceraldehyde-3-phosphate dehydrogenase (Fragment... [more]
G3P_THEAQ1.220e-2151.52Glyceraldehyde-3-phosphate dehydrogenase OS=Thermu... [more]
G3P2_ANAVT1.594e-2151.02Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Anab... [more]
G3P2_ANASP1.594e-2151.02Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Anab... [more]
G3P_MYCTU2.082e-2153.33Glyceraldehyde-3-phosphate dehydrogenase OS=Mycoba... [more]
G3P_MYCBO2.082e-2153.33Glyceraldehyde-3-phosphate dehydrogenase OS=Mycoba... [more]
G3P_MYCAV2.082e-2151.43Glyceraldehyde-3-phosphate dehydrogenase OS=Mycoba... [more]
G3P_BACME2.082e-2148.54Glyceraldehyde-3-phosphate dehydrogenase OS=Bacill... [more]
G3P_BORBU3.551e-2151.89Glyceraldehyde-3-phosphate dehydrogenase OS=Borrel... [more]
G3P_BOLED3.551e-2164.29Glyceraldehyde-3-phosphate dehydrogenase (Fragment... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0001_IIIaR_B10 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0001_IIIaR_B10 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304393 ID=CB304393; Name=CB304393; organism=Citrus sinensis; type=EST; length=653bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTCGCAGCTGAAGAACAGGTCTT
CGATACTAACTAGATGAAAAATTATAAAAGCAAGTTTCCAATAGACAATT
GTTTTCTCGCTAACAAAACATAAGTTGGTTCACCAACTCTTCTTGCATAC
TACAAGGGAAAATCTAAGCACAACCCTGCATGAGCAGGTAAGGCTCTGGA
TAATGTCTTGGAAACAATTTTATTTAAACTCAGACCCTCTACATAGAAAC
ACAAACACCACATTTAGCGCAAAGAAACACCACACTTAGCACAACTAAGC
GTGTTACATACTCAAGCCACGCCGAGTAAGTTACTGGGTCTTCGCCATGT
GGACAATCAAATCCACCACACGAGTACTGTAGCCCCACTCATTGTCATAC
CATGAGACAAGCTTCACAAATTTCTTACTCAAAACAATACCAGCCTTGGC
ACCAAAGATACTTGACCTACTGTCACCAACAAAGTCGGTGGATACCACAT
CATCCTCAGTGTATCCCAAGATACCCTTTAGTTTCCCCTCTGACTCCGCC
TTGATGGCAGCTTTGATTTCATCATAAGAAGCGTCCTTCTCCAGCCTCAC
TGTGAGGTCAACCACTGAGACATCAACAGTGGGTACACGGAAAGCCATAC
CAG
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