CB304393

Overview
NameCB304393
Unique NameCB304393
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length653
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB304393 vs. ExPASy Swiss-Prot
Match: G3P2_STAAN (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Staphylococcus aureus (strain N315) GN=gapA2 PE=1 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.396e-17
Identity = 48/98 (48.98%), Postives = 67/98 (68.37%), Query Frame = -3
Query:  358 GMAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFGAKAGIVLSKKFVKLVSWYDNEWGYSTRVVDL 651
            GMA RVPT +VS+VDL V LEK+ + +E+  A   E+ G L+GI+      +VS DF  +  S+I  AK+ +V+S   VK+++WYDNEWGYS RVVD+
Sbjct:  230 GMALRVPTKNVSLVDLVVDLEKEVTAEEVNQAF--ENAG-LEGIIEVEHQPLVSVDFNTNPNSAIIDAKSTMVMSGNKVKVIAWYDNEWGYSNRVVDV 324          
BLAST of CB304393 vs. ExPASy Swiss-Prot
Match: G3P2_STAAM (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=gapA2 PE=1 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.396e-17
Identity = 48/98 (48.98%), Postives = 67/98 (68.37%), Query Frame = -3
Query:  358 GMAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFGAKAGIVLSKKFVKLVSWYDNEWGYSTRVVDL 651
            GMA RVPT +VS+VDL V LEK+ + +E+  A   E+ G L+GI+      +VS DF  +  S+I  AK+ +V+S   VK+++WYDNEWGYS RVVD+
Sbjct:  230 GMALRVPTKNVSLVDLVVDLEKEVTAEEVNQAF--ENAG-LEGIIEVEHQPLVSVDFNTNPNSAIIDAKSTMVMSGNKVKVIAWYDNEWGYSNRVVDV 324          
BLAST of CB304393 vs. ExPASy Swiss-Prot
Match: G3P2_STAAC (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Staphylococcus aureus (strain COL) GN=gapA2 PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.396e-17
Identity = 48/98 (48.98%), Postives = 67/98 (68.37%), Query Frame = -3
Query:  358 GMAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFGAKAGIVLSKKFVKLVSWYDNEWGYSTRVVDL 651
            GMA RVPT +VS+VDL V LEK+ + +E+  A   E+ G L+GI+      +VS DF  +  S+I  AK+ +V+S   VK+++WYDNEWGYS RVVD+
Sbjct:  230 GMALRVPTKNVSLVDLVVDLEKEVTAEEVNQAF--ENAG-LEGIIEVEHQPLVSVDFNTNPNSAIIDAKSTMVMSGNKVKVIAWYDNEWGYSNRVVDV 324          
BLAST of CB304393 vs. ExPASy Swiss-Prot
Match: G3PB_TOBAC (Glyceraldehyde-3-phosphate dehydrogenase B, chloroplastic (Fragment) OS=Nicotiana tabacum GN=GAPB PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.824e-17
Identity = 45/99 (45.45%), Postives = 65/99 (65.66%), Query Frame = -3
Query:  358 GMAFRVPTVDVSVVDLTVRL-EKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFGAKAGIVLSKKFVKLVSWYDNEWGYSTRVVDL 651
            G+A RVPT +VSVVDL V + +K  + +++ AA +  ++G LKG+L   ++ +VS DF     SS   +   +V+    VK+V+WYDNEWGYS RVVDL
Sbjct:  285 GIALRVPTPNVSVVDLVVNVAKKGITAEDVNAAFRKAADGPLKGVLAVCDEPLVSVDFRCSDVSSTIDSSLTMVMGDDMVKVVAWYDNEWGYSQRVVDL 383          
BLAST of CB304393 vs. ExPASy Swiss-Prot
Match: G3PB_PEA (Glyceraldehyde-3-phosphate dehydrogenase B, chloroplastic OS=Pisum sativum GN=GAPB PE=2 SV=2)

HSP 1 Score: 88.5817 bits (218), Expect = 3.111e-17
Identity = 47/99 (47.47%), Postives = 64/99 (64.65%), Query Frame = -3
Query:  358 GMAFRVPTVDVSVVDLTVRL-EKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFGAKAGIVLSKKFVKLVSWYDNEWGYSTRVVDL 651
            G+A RVPT +VSVVDL V + +K  S +++ AA +  +EG LKGIL   +  +VS DF     S+   +   +V+    VK+V+WYDNEWGYS RVVDL
Sbjct:  316 GIALRVPTPNVSVVDLVVNVAKKGISAEDVNAAFRKAAEGPLKGILDVCDVPLVSVDFRCSDVSTTIDSSLTMVMGDDMVKVVAWYDNEWGYSQRVVDL 414          
BLAST of CB304393 vs. ExPASy Swiss-Prot
Match: G3PA_TOBAC (Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic (Fragment) OS=Nicotiana tabacum GN=GAPA PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.111e-17
Identity = 44/97 (45.36%), Postives = 62/97 (63.92%), Query Frame = -3
Query:  358 MAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFGAKAGIVLSKKFVKLVSWYDNEWGYSTRVVDL 648
            +  RVPT +VSVVDL V++ K    +E+ AA +  ++ +LKGIL   ++ +VS DF     SS   A   +V+    VK+++WYDNEWGYS RVVDL
Sbjct:  287 LPLRVPTPNVSVVDLVVQVSKKTFAEEVNAAFREAADKELKGILDVCDEPLVSVDFRCSDVSSTVDASLTMVMGDDMVKVIAWYDNEWGYSQRVVDL 383          
BLAST of CB304393 vs. ExPASy Swiss-Prot
Match: E4PD_SHEFN (D-erythrose-4-phosphate dehydrogenase OS=Shewanella frigidimarina (strain NCIMB 400) GN=epd PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.111e-17
Identity = 42/105 (40.00%), Postives = 67/105 (63.81%), Query Frame = -3
Query:  334 MAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFGAKAGIVLSKKFVKLVSWYDNEWGYSTRVVDLIVHMAKTQ 648
            ++ RVPT++V+ +DL+V LEK  + ++I + ++  S G   GILGYT++ +VS DF  D RSSI       V +   VKL+ W DNEWG++ R++D  + M + +
Sbjct:  232 ISVRVPTINVTAIDLSVTLEKKVNIEQINSVLQRASNGSFNGILGYTDEPLVSCDFNHDPRSSIVDGTQTRVSAGHLVKLLLWCDNEWGFANRMLDTSLAMIQAK 336          
BLAST of CB304393 vs. ExPASy Swiss-Prot
Match: G3P_CAVPO (Glyceraldehyde-3-phosphate dehydrogenase (Fragment) OS=Cavia porcellus GN=GAPDH PE=2 SV=2)

HSP 1 Score: 87.8113 bits (216), Expect = 5.306e-17
Identity = 44/61 (72.13%), Postives = 48/61 (78.69%), Query Frame = -3
Query:  469 GMAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDS 651
            GMAFRVPT +VSVVDLT RLEK A YD+IK  +K  SEG LKGILGYTED VVS DF  D+
Sbjct:   62 GMAFRVPTPNVSVVDLTCRLEKPAKYDDIKKVVKQASEGSLKGILGYTEDQVVSCDFNSDT 122          
BLAST of CB304393 vs. ExPASy Swiss-Prot
Match: G3P3_ANAVT (Glyceraldehyde-3-phosphate dehydrogenase 3 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=gap3 PE=3 SV=2)

HSP 1 Score: 87.8113 bits (216), Expect = 5.306e-17
Identity = 44/99 (44.44%), Postives = 65/99 (65.66%), Query Frame = -3
Query:  358 GMAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESE-GKLKGILGYTEDDVVSTDFVGDSRSSIFGAKAGIVLSKKFVKLVSWYDNEWGYSTRVVDL 651
            G+A RVP ++ S+ D    + +  + +EI A +KA SE   L+GILGY E  +VS D+  D RSSI  A + +V+ +  VK+++WYDNEWGY  R+V+L
Sbjct:  230 GIAVRVPLLNASLTDCVFEVNRPTTVEEINALLKAASEQAPLQGILGYEERPLVSIDYKDDPRSSIIDALSTMVVDETQVKILAWYDNEWGYVNRMVEL 328          
BLAST of CB304393 vs. ExPASy Swiss-Prot
Match: G3P3_ANASP (Glyceraldehyde-3-phosphate dehydrogenase 3 OS=Anabaena sp. (strain PCC 7120) GN=gap3 PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 6.930e-17
Identity = 44/99 (44.44%), Postives = 65/99 (65.66%), Query Frame = -3
Query:  358 GMAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESE-GKLKGILGYTEDDVVSTDFVGDSRSSIFGAKAGIVLSKKFVKLVSWYDNEWGYSTRVVDL 651
            G+A RVP ++ S+ D    + +  + +EI A +KA SE   L+GILGY E  +VS D+  D RSSI  A + +V+ +  VK+++WYDNEWGY  R+V+L
Sbjct:  230 GIAVRVPLLNASLTDCVFEVTRPTTVEEINALLKAASEQAPLQGILGYEERPLVSIDYKDDPRSSIIDALSTMVVDETQVKILAWYDNEWGYVNRMVEL 328          
The following BLAST results are available for this feature:
BLAST of CB304393 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 342
Match NameE-valueIdentityDescription
G3P2_STAAN1.396e-1748.98Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Stap... [more]
G3P2_STAAM1.396e-1748.98Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Stap... [more]
G3P2_STAAC1.396e-1748.98Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Stap... [more]
G3PB_TOBAC1.824e-1745.45Glyceraldehyde-3-phosphate dehydrogenase B, chloro... [more]
G3PB_PEA3.111e-1747.47Glyceraldehyde-3-phosphate dehydrogenase B, chloro... [more]
G3PA_TOBAC3.111e-1745.36Glyceraldehyde-3-phosphate dehydrogenase A, chloro... [more]
E4PD_SHEFN3.111e-1740.00D-erythrose-4-phosphate dehydrogenase OS=Shewanell... [more]
G3P_CAVPO5.306e-1772.13Glyceraldehyde-3-phosphate dehydrogenase (Fragment... [more]
G3P3_ANAVT5.306e-1744.44Glyceraldehyde-3-phosphate dehydrogenase 3 OS=Anab... [more]
G3P3_ANASP6.930e-1744.44Glyceraldehyde-3-phosphate dehydrogenase 3 OS=Anab... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0001_IIIaR_B10 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0001_IIIaR_B10 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304393 ID=CB304393; Name=CB304393; organism=Citrus sinensis; type=EST; length=653bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTCGCAGCTGAAGAACAGGTCTT
CGATACTAACTAGATGAAAAATTATAAAAGCAAGTTTCCAATAGACAATT
GTTTTCTCGCTAACAAAACATAAGTTGGTTCACCAACTCTTCTTGCATAC
TACAAGGGAAAATCTAAGCACAACCCTGCATGAGCAGGTAAGGCTCTGGA
TAATGTCTTGGAAACAATTTTATTTAAACTCAGACCCTCTACATAGAAAC
ACAAACACCACATTTAGCGCAAAGAAACACCACACTTAGCACAACTAAGC
GTGTTACATACTCAAGCCACGCCGAGTAAGTTACTGGGTCTTCGCCATGT
GGACAATCAAATCCACCACACGAGTACTGTAGCCCCACTCATTGTCATAC
CATGAGACAAGCTTCACAAATTTCTTACTCAAAACAATACCAGCCTTGGC
ACCAAAGATACTTGACCTACTGTCACCAACAAAGTCGGTGGATACCACAT
CATCCTCAGTGTATCCCAAGATACCCTTTAGTTTCCCCTCTGACTCCGCC
TTGATGGCAGCTTTGATTTCATCATAAGAAGCGTCCTTCTCCAGCCTCAC
TGTGAGGTCAACCACTGAGACATCAACAGTGGGTACACGGAAAGCCATAC
CAG
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