CB304393

Overview
NameCB304393
Unique NameCB304393
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length653
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB304393 vs. ExPASy Swiss-Prot
Match: E4PD_AERS4 (D-erythrose-4-phosphate dehydrogenase OS=Aeromonas salmonicida (strain A449) GN=epd PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 4.967e-15
Identity = 37/96 (38.54%), Postives = 59/96 (61.46%), Query Frame = -3
Query:  361 MAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFGAKAGIVLSKKFVKLVSWYDNEWGYSTRVVD 648
            +A RVPT++V+ +DL++ + K  +  ++  A++  S G L GIL YTE+ +VS DF  D+ S I       V     VK++ W DNEWG++ R++D
Sbjct:  232 IAVRVPTINVTAMDLSITVRKKVTVTDVNQALQRASRGTLSGILDYTEEPLVSVDFNHDAHSCIIDGTQTRVSDANLVKMLMWCDNEWGFANRMLD 327          
BLAST of CB304393 vs. ExPASy Swiss-Prot
Match: E4PD_AERHH (D-erythrose-4-phosphate dehydrogenase OS=Aeromonas hydrophila subsp. hydrophila (strain ATCC 7966 / NCIB 9240) GN=epd PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 4.967e-15
Identity = 37/96 (38.54%), Postives = 59/96 (61.46%), Query Frame = -3
Query:  361 MAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFGAKAGIVLSKKFVKLVSWYDNEWGYSTRVVD 648
            +A RVPT++V+ +DL++ + K  +  ++  A++  S G L GIL YTE+ +VS DF  D+ S I       V     VK++ W DNEWG++ R++D
Sbjct:  232 IAVRVPTINVTAMDLSITVRKKVTVTDVNQALQRASRGTLSGILDYTEEPLVSVDFNHDAHSCIIDGTQTRVSDANLVKMLMWCDNEWGFANRMLD 327          
BLAST of CB304393 vs. ExPASy Swiss-Prot
Match: G3P_STRP8 (Glyceraldehyde-3-phosphate dehydrogenase OS=Streptococcus pyogenes serotype M18 GN=gap PE=3 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 6.487e-15
Identity = 49/107 (45.79%), Postives = 63/107 (58.88%), Query Frame = -3
Query:  340 GMAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFGA---KAGIVLSKKFVKLVSWYDNEWGYSTRVVDLIVHMAK 651
            G A RVP    SV +L V L+K+ S DEI AA+KA S        GYTED +VS+D VG S  S+F A   K   V   + VK+VSWYDNE  Y+ ++V  + + AK
Sbjct:  231 GAAQRVPVPTGSVTELVVTLDKNVSVDEINAAMKAASNDS----FGYTEDPIVSSDIVGVSYGSLFDATQTKVMEVDGSQLVKVVSWYDNEMSYTAQLVRTLEYFAK 333          
BLAST of CB304393 vs. ExPASy Swiss-Prot
Match: G3P_STRP6 (Glyceraldehyde-3-phosphate dehydrogenase OS=Streptococcus pyogenes serotype M6 GN=gap PE=1 SV=3)

HSP 1 Score: 80.8777 bits (198), Expect = 6.487e-15
Identity = 49/107 (45.79%), Postives = 63/107 (58.88%), Query Frame = -3
Query:  340 GMAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFGA---KAGIVLSKKFVKLVSWYDNEWGYSTRVVDLIVHMAK 651
            G A RVP    SV +L V L+K+ S DEI AA+KA S        GYTED +VS+D VG S  S+F A   K   V   + VK+VSWYDNE  Y+ ++V  + + AK
Sbjct:  231 GAAQRVPVPTGSVTELVVTLDKNVSVDEINAAMKAASNDS----FGYTEDPIVSSDIVGVSYGSLFDATQTKVMEVDGSQLVKVVSWYDNEMSYTAQLVRTLEYFAK 333          
BLAST of CB304393 vs. ExPASy Swiss-Prot
Match: G3P_STRP3 (Glyceraldehyde-3-phosphate dehydrogenase OS=Streptococcus pyogenes serotype M3 GN=gap PE=3 SV=3)

HSP 1 Score: 80.8777 bits (198), Expect = 6.487e-15
Identity = 49/107 (45.79%), Postives = 63/107 (58.88%), Query Frame = -3
Query:  340 GMAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFGA---KAGIVLSKKFVKLVSWYDNEWGYSTRVVDLIVHMAK 651
            G A RVP    SV +L V L+K+ S DEI AA+KA S        GYTED +VS+D VG S  S+F A   K   V   + VK+VSWYDNE  Y+ ++V  + + AK
Sbjct:  231 GAAQRVPVPTGSVTELVVTLDKNVSVDEINAAMKAASNDS----FGYTEDPIVSSDIVGVSYGSLFDATQTKVMEVDGSQLVKVVSWYDNEMSYTAQLVRTLEYFAK 333          
BLAST of CB304393 vs. ExPASy Swiss-Prot
Match: G3P_STRP1 (Glyceraldehyde-3-phosphate dehydrogenase OS=Streptococcus pyogenes serotype M1 GN=gap PE=3 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 6.487e-15
Identity = 49/107 (45.79%), Postives = 63/107 (58.88%), Query Frame = -3
Query:  340 GMAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFGA---KAGIVLSKKFVKLVSWYDNEWGYSTRVVDLIVHMAK 651
            G A RVP    SV +L V L+K+ S DEI AA+KA S        GYTED +VS+D VG S  S+F A   K   V   + VK+VSWYDNE  Y+ ++V  + + AK
Sbjct:  231 GAAQRVPVPTGSVTELVVTLDKNVSVDEINAAMKAASNDS----FGYTEDPIVSSDIVGVSYGSLFDATQTKVMEVDGSQLVKVVSWYDNEMSYTAQLVRTLEYFAK 333          
BLAST of CB304393 vs. ExPASy Swiss-Prot
Match: G3P_STREQ (Glyceraldehyde-3-phosphate dehydrogenase OS=Streptococcus equisimilis GN=gap PE=3 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 6.487e-15
Identity = 49/107 (45.79%), Postives = 63/107 (58.88%), Query Frame = -3
Query:  340 GMAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFGA---KAGIVLSKKFVKLVSWYDNEWGYSTRVVDLIVHMAK 651
            G A RVP    SV +L V L+K+ S DEI AA+KA S        GYTED +VS+D VG S  S+F A   K   V   + VK+VSWYDNE  Y+ ++V  + + AK
Sbjct:  231 GAAQRVPVPTGSVTELVVTLDKNVSVDEINAAMKAASNDS----FGYTEDPIVSSDIVGVSYGSLFDATQTKVMEVDGSQLVKVVSWYDNEMSYTAQLVRTLEYFAK 333          
BLAST of CB304393 vs. ExPASy Swiss-Prot
Match: E4PD_SHEDO (D-erythrose-4-phosphate dehydrogenase OS=Shewanella denitrificans (strain OS217 / ATCC BAA-1090 / DSM 15013) GN=epd PE=3 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 6.487e-15
Identity = 39/105 (37.14%), Postives = 64/105 (60.95%), Query Frame = -3
Query:  334 MAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFGAKAGIVLSKKFVKLVSWYDNEWGYSTRVVDLIVHMAKTQ 648
            ++ RVPT++V+ +D++V L        I + ++  ++G+  GILGYT++ +VS DF  D RSSI  A    V     VKL+ W DNEWG++ R++D  + M + +
Sbjct:  232 ISVRVPTINVTAIDVSVTLRDRVDISIINSVLQQAAKGRFDGILGYTDEPLVSCDFNHDPRSSIVDATQTRVSDGHLVKLLLWCDNEWGFANRMLDTSLAMIRAK 336          
BLAST of CB304393 vs. ExPASy Swiss-Prot
Match: G3PA_SCEVA (Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic (Fragment) OS=Scenedesmus vacuolatus GN=GapA PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 8.472e-15
Identity = 40/90 (44.44%), Postives = 56/90 (62.22%), Query Frame = -3
Query:  382 GMAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFGAKAGIVLSKKFVKLVSWYDNEWG 651
            G+A RVPT +VSVVDL V++EK    +EI  A K  + G L G+L  +++ +VS DF     SS   +   +V+    VK+V+WYDNEWG
Sbjct:  225 GIALRVPTPNVSVVDLVVQVEKKTFAEEINNAFKEAAAGSLNGVLAVSDEPLVSVDFRCTDVSSTIDSSLTMVMGADMVKVVAWYDNEWG 314          
BLAST of CB304393 vs. ExPASy Swiss-Prot
Match: G3P_STRPY (Glyceraldehyde-3-phosphate dehydrogenase OS=Streptococcus pyogenes GN=gap PE=1 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 1.445e-14
Identity = 48/107 (44.86%), Postives = 63/107 (58.88%), Query Frame = -3
Query:  340 GMAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFGA---KAGIVLSKKFVKLVSWYDNEWGYSTRVVDLIVHMAK 651
            G A RVP    SV +L V L+K+ S DEI +A+KA S        GYTED +VS+D VG S  S+F A   K   V   + VK+VSWYDNE  Y+ ++V  + + AK
Sbjct:  231 GAAQRVPVPTGSVTELVVTLDKNVSVDEINSAMKAASNDS----FGYTEDPIVSSDIVGVSYGSLFDATQTKVMEVDGSQLVKVVSWYDNEMSYTAQLVRTLEYFAK 333          
The following BLAST results are available for this feature:
BLAST of CB304393 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 342
Match NameE-valueIdentityDescription
E4PD_AERS44.967e-1538.54D-erythrose-4-phosphate dehydrogenase OS=Aeromonas... [more]
E4PD_AERHH4.967e-1538.54D-erythrose-4-phosphate dehydrogenase OS=Aeromonas... [more]
G3P_STRP86.487e-1545.79Glyceraldehyde-3-phosphate dehydrogenase OS=Strept... [more]
G3P_STRP66.487e-1545.79Glyceraldehyde-3-phosphate dehydrogenase OS=Strept... [more]
G3P_STRP36.487e-1545.79Glyceraldehyde-3-phosphate dehydrogenase OS=Strept... [more]
G3P_STRP16.487e-1545.79Glyceraldehyde-3-phosphate dehydrogenase OS=Strept... [more]
G3P_STREQ6.487e-1545.79Glyceraldehyde-3-phosphate dehydrogenase OS=Strept... [more]
E4PD_SHEDO6.487e-1537.14D-erythrose-4-phosphate dehydrogenase OS=Shewanell... [more]
G3PA_SCEVA8.472e-1544.44Glyceraldehyde-3-phosphate dehydrogenase A, chloro... [more]
G3P_STRPY1.445e-1444.86Glyceraldehyde-3-phosphate dehydrogenase OS=Strept... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0001_IIIaR_B10 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0001_IIIaR_B10 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304393 ID=CB304393; Name=CB304393; organism=Citrus sinensis; type=EST; length=653bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTCGCAGCTGAAGAACAGGTCTT
CGATACTAACTAGATGAAAAATTATAAAAGCAAGTTTCCAATAGACAATT
GTTTTCTCGCTAACAAAACATAAGTTGGTTCACCAACTCTTCTTGCATAC
TACAAGGGAAAATCTAAGCACAACCCTGCATGAGCAGGTAAGGCTCTGGA
TAATGTCTTGGAAACAATTTTATTTAAACTCAGACCCTCTACATAGAAAC
ACAAACACCACATTTAGCGCAAAGAAACACCACACTTAGCACAACTAAGC
GTGTTACATACTCAAGCCACGCCGAGTAAGTTACTGGGTCTTCGCCATGT
GGACAATCAAATCCACCACACGAGTACTGTAGCCCCACTCATTGTCATAC
CATGAGACAAGCTTCACAAATTTCTTACTCAAAACAATACCAGCCTTGGC
ACCAAAGATACTTGACCTACTGTCACCAACAAAGTCGGTGGATACCACAT
CATCCTCAGTGTATCCCAAGATACCCTTTAGTTTCCCCTCTGACTCCGCC
TTGATGGCAGCTTTGATTTCATCATAAGAAGCGTCCTTCTCCAGCCTCAC
TGTGAGGTCAACCACTGAGACATCAACAGTGGGTACACGGAAAGCCATAC
CAG
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