CB304393

Overview
NameCB304393
Unique NameCB304393
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length653
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB304393 vs. ExPASy Swiss-Prot
Match: E4PD_VIBCH (D-erythrose-4-phosphate dehydrogenase OS=Vibrio cholerae GN=epd PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 9.367e-14
Identity = 38/105 (36.19%), Postives = 64/105 (60.95%), Query Frame = -3
Query:  334 MAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFGAKAGIVLSKKFVKLVSWYDNEWGYSTRVVDLIVHMAKTQ 648
            ++ RVPTV+V+ +DL+V ++ +   +++   I   S+  L+GI+ YTE  +VS DF  D  S+I       V + + VK++ W DNEWG++ R++D  + M  TQ
Sbjct:  237 ISVRVPTVNVTAMDLSVTIKSNVKVNDVNQTIVNASQCTLRGIVDYTEAPLVSIDFNHDPHSAIVDGTQTRVSNGQLVKMLVWCDNEWGFANRMLDTALAMQATQ 341          
BLAST of CB304393 vs. ExPASy Swiss-Prot
Match: E4PD_VIBC3 (D-erythrose-4-phosphate dehydrogenase OS=Vibrio cholerae serotype O1 (strain ATCC 39541 / Ogawa 395 / O395) GN=epd PE=1 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 9.367e-14
Identity = 38/105 (36.19%), Postives = 64/105 (60.95%), Query Frame = -3
Query:  334 MAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFGAKAGIVLSKKFVKLVSWYDNEWGYSTRVVDLIVHMAKTQ 648
            ++ RVPTV+V+ +DL+V ++ +   +++   I   S+  L+GI+ YTE  +VS DF  D  S+I       V + + VK++ W DNEWG++ R++D  + M  TQ
Sbjct:  237 ISVRVPTVNVTAMDLSVTIKSNVKVNDVNQTIVNASQCTLRGIVDYTEAPLVSIDFNHDPHSAIVDGTQTRVSNGQLVKMLVWCDNEWGFANRMLDTALAMQATQ 341          
BLAST of CB304393 vs. ExPASy Swiss-Prot
Match: G3P_MYCPN (Glyceraldehyde-3-phosphate dehydrogenase OS=Mycoplasma pneumoniae GN=gapA PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.223e-13
Identity = 41/107 (38.32%), Postives = 63/107 (58.88%), Query Frame = -3
Query:  340 GMAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFGAKAGIVL---SKKFVKLVSWYDNEWGYSTRVVDLIVHMAK 651
            GMA RVP +  S+V+L V LEKDA+ ++I  A+K  +    +    Y ED++VS+D VG    SIF +K   ++     K  K+ +WYDNE  Y  ++V ++ + AK
Sbjct:  234 GMALRVPVLTGSIVELCVALEKDATVEQINQAMKKAASASFR----YCEDEIVSSDIVGSEHGSIFDSKLTNIIEVDGNKLYKVYAWYDNESSYVNQLVRVVNYCAK 336          
BLAST of CB304393 vs. ExPASy Swiss-Prot
Match: E4PD_SALTY (D-erythrose-4-phosphate dehydrogenase OS=Salmonella typhimurium GN=epd PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.223e-13
Identity = 36/102 (35.29%), Postives = 59/102 (57.84%), Query Frame = -3
Query:  343 MAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFGAKAGIVLSKKFVKLVSWYDNEWGYSTRVVDLIVHMA 648
            +A RVPT++V+ +DL+V ++K     E+   ++  ++G   GI+ YTE  +VS DF  D  S+I       V     +K + W DNEWG++ R++D  + MA
Sbjct:  233 IAVRVPTINVTAIDLSVTVKKPVKASEVNQLLQKAAQGAFHGIVDYTESPLVSIDFNHDPHSAIVDGTQTRVSGAHLIKTLVWCDNEWGFANRMLDTTLAMA 334          
BLAST of CB304393 vs. ExPASy Swiss-Prot
Match: E4PD_SALTI (D-erythrose-4-phosphate dehydrogenase OS=Salmonella typhi GN=epd PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.223e-13
Identity = 36/102 (35.29%), Postives = 59/102 (57.84%), Query Frame = -3
Query:  343 MAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFGAKAGIVLSKKFVKLVSWYDNEWGYSTRVVDLIVHMA 648
            +A RVPT++V+ +DL+V ++K     E+   ++  ++G   GI+ YTE  +VS DF  D  S+I       V     +K + W DNEWG++ R++D  + MA
Sbjct:  233 IAVRVPTINVTAIDLSVTVKKPVKASEVNQLLQKAAQGAFHGIVDYTESPLVSIDFNHDPHSAIVDGTQTRVSGAHLIKTLVWCDNEWGFANRMLDTTLAMA 334          
BLAST of CB304393 vs. ExPASy Swiss-Prot
Match: E4PD_SALSV (D-erythrose-4-phosphate dehydrogenase OS=Salmonella schwarzengrund (strain CVM19633) GN=epd PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.223e-13
Identity = 36/102 (35.29%), Postives = 59/102 (57.84%), Query Frame = -3
Query:  343 MAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFGAKAGIVLSKKFVKLVSWYDNEWGYSTRVVDLIVHMA 648
            +A RVPT++V+ +DL+V ++K     E+   ++  ++G   GI+ YTE  +VS DF  D  S+I       V     +K + W DNEWG++ R++D  + MA
Sbjct:  233 IAVRVPTINVTAIDLSVTVKKPVKASEVNQLLQKAAQGAFHGIVDYTESPLVSIDFNHDPHSAIVDGTQTRVSGAHLIKTLVWCDNEWGFANRMLDTTLAMA 334          
BLAST of CB304393 vs. ExPASy Swiss-Prot
Match: E4PD_SALPK (D-erythrose-4-phosphate dehydrogenase OS=Salmonella paratyphi A (strain AKU_12601) GN=epd PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.223e-13
Identity = 36/102 (35.29%), Postives = 59/102 (57.84%), Query Frame = -3
Query:  343 MAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFGAKAGIVLSKKFVKLVSWYDNEWGYSTRVVDLIVHMA 648
            +A RVPT++V+ +DL+V ++K     E+   ++  ++G   GI+ YTE  +VS DF  D  S+I       V     +K + W DNEWG++ R++D  + MA
Sbjct:  233 IAVRVPTINVTAIDLSVTVKKPVKASEVNQLLQKAAQGAFHGIVDYTESPLVSIDFNHDPHSAIVDGTQTRVSGAHLIKTLVWCDNEWGFANRMLDTTLAMA 334          
BLAST of CB304393 vs. ExPASy Swiss-Prot
Match: E4PD_SALPC (D-erythrose-4-phosphate dehydrogenase OS=Salmonella paratyphi C (strain RKS4594) GN=epd PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.223e-13
Identity = 36/102 (35.29%), Postives = 59/102 (57.84%), Query Frame = -3
Query:  343 MAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFGAKAGIVLSKKFVKLVSWYDNEWGYSTRVVDLIVHMA 648
            +A RVPT++V+ +DL+V ++K     E+   ++  ++G   GI+ YTE  +VS DF  D  S+I       V     +K + W DNEWG++ R++D  + MA
Sbjct:  233 IAVRVPTINVTAIDLSVTVKKPVKASEVNQLLQKAAQGAFHGIVDYTESPLVSIDFNHDPHSAIVDGTQTRVSGAHLIKTLVWCDNEWGFANRMLDTTLAMA 334          
BLAST of CB304393 vs. ExPASy Swiss-Prot
Match: E4PD_SALPB (D-erythrose-4-phosphate dehydrogenase OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=epd PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.223e-13
Identity = 36/102 (35.29%), Postives = 59/102 (57.84%), Query Frame = -3
Query:  343 MAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFGAKAGIVLSKKFVKLVSWYDNEWGYSTRVVDLIVHMA 648
            +A RVPT++V+ +DL+V ++K     E+   ++  ++G   GI+ YTE  +VS DF  D  S+I       V     +K + W DNEWG++ R++D  + MA
Sbjct:  233 IAVRVPTINVTAIDLSVTVKKTVKASEVNQLLQKAAQGAFHGIVDYTESPLVSIDFNHDPHSAIVDGTQTRVSGAHLIKTLVWCDNEWGFANRMLDTTLAMA 334          
BLAST of CB304393 vs. ExPASy Swiss-Prot
Match: E4PD_SALPA (D-erythrose-4-phosphate dehydrogenase OS=Salmonella paratyphi A GN=epd PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.223e-13
Identity = 36/102 (35.29%), Postives = 59/102 (57.84%), Query Frame = -3
Query:  343 MAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFGAKAGIVLSKKFVKLVSWYDNEWGYSTRVVDLIVHMA 648
            +A RVPT++V+ +DL+V ++K     E+   ++  ++G   GI+ YTE  +VS DF  D  S+I       V     +K + W DNEWG++ R++D  + MA
Sbjct:  233 IAVRVPTINVTAIDLSVTVKKPVKASEVNQLLQKAAQGAFHGIVDYTESPLVSIDFNHDPHSAIVDGTQTRVSGAHLIKTLVWCDNEWGFANRMLDTTLAMA 334          
The following BLAST results are available for this feature:
BLAST of CB304393 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 342
Match NameE-valueIdentityDescription
E4PD_VIBCH9.367e-1436.19D-erythrose-4-phosphate dehydrogenase OS=Vibrio ch... [more]
E4PD_VIBC39.367e-1436.19D-erythrose-4-phosphate dehydrogenase OS=Vibrio ch... [more]
G3P_MYCPN1.223e-1338.32Glyceraldehyde-3-phosphate dehydrogenase OS=Mycopl... [more]
E4PD_SALTY1.223e-1335.29D-erythrose-4-phosphate dehydrogenase OS=Salmonell... [more]
E4PD_SALTI1.223e-1335.29D-erythrose-4-phosphate dehydrogenase OS=Salmonell... [more]
E4PD_SALSV1.223e-1335.29D-erythrose-4-phosphate dehydrogenase OS=Salmonell... [more]
E4PD_SALPK1.223e-1335.29D-erythrose-4-phosphate dehydrogenase OS=Salmonell... [more]
E4PD_SALPC1.223e-1335.29D-erythrose-4-phosphate dehydrogenase OS=Salmonell... [more]
E4PD_SALPB1.223e-1335.29D-erythrose-4-phosphate dehydrogenase OS=Salmonell... [more]
E4PD_SALPA1.223e-1335.29D-erythrose-4-phosphate dehydrogenase OS=Salmonell... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0001_IIIaR_B10 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0001_IIIaR_B10 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304393 ID=CB304393; Name=CB304393; organism=Citrus sinensis; type=EST; length=653bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTCGCAGCTGAAGAACAGGTCTT
CGATACTAACTAGATGAAAAATTATAAAAGCAAGTTTCCAATAGACAATT
GTTTTCTCGCTAACAAAACATAAGTTGGTTCACCAACTCTTCTTGCATAC
TACAAGGGAAAATCTAAGCACAACCCTGCATGAGCAGGTAAGGCTCTGGA
TAATGTCTTGGAAACAATTTTATTTAAACTCAGACCCTCTACATAGAAAC
ACAAACACCACATTTAGCGCAAAGAAACACCACACTTAGCACAACTAAGC
GTGTTACATACTCAAGCCACGCCGAGTAAGTTACTGGGTCTTCGCCATGT
GGACAATCAAATCCACCACACGAGTACTGTAGCCCCACTCATTGTCATAC
CATGAGACAAGCTTCACAAATTTCTTACTCAAAACAATACCAGCCTTGGC
ACCAAAGATACTTGACCTACTGTCACCAACAAAGTCGGTGGATACCACAT
CATCCTCAGTGTATCCCAAGATACCCTTTAGTTTCCCCTCTGACTCCGCC
TTGATGGCAGCTTTGATTTCATCATAAGAAGCGTCCTTCTCCAGCCTCAC
TGTGAGGTCAACCACTGAGACATCAACAGTGGGTACACGGAAAGCCATAC
CAG
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