CB304393

Overview
NameCB304393
Unique NameCB304393
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length653
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2038 contig Csv1_Contig2038:37..689. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304393 vs. ExPASy Swiss-Prot
Match: E4PD_SALNS (D-erythrose-4-phosphate dehydrogenase OS=Salmonella newport (strain SL254) GN=epd PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.223e-13
Identity = 36/102 (35.29%), Postives = 59/102 (57.84%), Query Frame = -3
Query:  343 MAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFGAKAGIVLSKKFVKLVSWYDNEWGYSTRVVDLIVHMA 648
            +A RVPT++V+ +DL+V ++K     E+   ++  ++G   GI+ YTE  +VS DF  D  S+I       V     +K + W DNEWG++ R++D  + MA
Sbjct:  233 IAVRVPTINVTAIDLSVTVKKPVKASEVNQLLQKAAQGAFHGIVDYTESPLVSIDFNHDPHSAIVDGTQTRVSGAHLIKTLVWCDNEWGFANRMLDTTLAMA 334          
BLAST of CB304393 vs. ExPASy Swiss-Prot
Match: E4PD_SALHS (D-erythrose-4-phosphate dehydrogenase OS=Salmonella heidelberg (strain SL476) GN=epd PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.223e-13
Identity = 36/102 (35.29%), Postives = 59/102 (57.84%), Query Frame = -3
Query:  343 MAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFGAKAGIVLSKKFVKLVSWYDNEWGYSTRVVDLIVHMA 648
            +A RVPT++V+ +DL+V ++K     E+   ++  ++G   GI+ YTE  +VS DF  D  S+I       V     +K + W DNEWG++ R++D  + MA
Sbjct:  233 IAVRVPTINVTAIDLSVTVKKPVKASEVNQLLQKAAQGAFHGIVDYTESPLVSIDFNHDPHSAIVDGTQTRVSGAHLIKTLVWCDNEWGFANRMLDTTLAMA 334          
BLAST of CB304393 vs. ExPASy Swiss-Prot
Match: E4PD_SALG2 (D-erythrose-4-phosphate dehydrogenase OS=Salmonella gallinarum (strain 287/91 / NCTC 13346) GN=epd PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.223e-13
Identity = 36/102 (35.29%), Postives = 59/102 (57.84%), Query Frame = -3
Query:  343 MAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFGAKAGIVLSKKFVKLVSWYDNEWGYSTRVVDLIVHMA 648
            +A RVPT++V+ +DL+V ++K     E+   ++  ++G   GI+ YTE  +VS DF  D  S+I       V     +K + W DNEWG++ R++D  + MA
Sbjct:  233 IAVRVPTINVTAIDLSVTVKKPVKASEVNQLLQKAAQGAFHGIVDYTESPLVSIDFNHDPHSAIVDGTQTRVSGAHLIKTLVWCDNEWGFANRMLDTTLAMA 334          
BLAST of CB304393 vs. ExPASy Swiss-Prot
Match: E4PD_SALEP (D-erythrose-4-phosphate dehydrogenase OS=Salmonella enteritidis PT4 (strain P125109) GN=epd PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.223e-13
Identity = 36/102 (35.29%), Postives = 59/102 (57.84%), Query Frame = -3
Query:  343 MAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFGAKAGIVLSKKFVKLVSWYDNEWGYSTRVVDLIVHMA 648
            +A RVPT++V+ +DL+V ++K     E+   ++  ++G   GI+ YTE  +VS DF  D  S+I       V     +K + W DNEWG++ R++D  + MA
Sbjct:  233 IAVRVPTINVTAIDLSVTVKKPVKASEVNQLLQKAAQGAFHGIVDYTESPLVSIDFNHDPHSAIVDGTQTRVSGAHLIKTLVWCDNEWGFANRMLDTTLAMA 334          
BLAST of CB304393 vs. ExPASy Swiss-Prot
Match: E4PD_SALDC (D-erythrose-4-phosphate dehydrogenase OS=Salmonella dublin (strain CT_02021853) GN=epd PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.223e-13
Identity = 36/102 (35.29%), Postives = 59/102 (57.84%), Query Frame = -3
Query:  343 MAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFGAKAGIVLSKKFVKLVSWYDNEWGYSTRVVDLIVHMA 648
            +A RVPT++V+ +DL+V ++K     E+   ++  ++G   GI+ YTE  +VS DF  D  S+I       V     +K + W DNEWG++ R++D  + MA
Sbjct:  233 IAVRVPTINVTAIDLSVTVKKPVKASEVNQLLQKAAQGAFHGIVDYTESPLVSIDFNHDPHSAIVDGTQTRVSGAHLIKTLVWCDNEWGFANRMLDTTLAMA 334          
BLAST of CB304393 vs. ExPASy Swiss-Prot
Match: E4PD_SALCH (D-erythrose-4-phosphate dehydrogenase OS=Salmonella choleraesuis GN=epd PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.223e-13
Identity = 36/102 (35.29%), Postives = 59/102 (57.84%), Query Frame = -3
Query:  343 MAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFGAKAGIVLSKKFVKLVSWYDNEWGYSTRVVDLIVHMA 648
            +A RVPT++V+ +DL+V ++K     E+   ++  ++G   GI+ YTE  +VS DF  D  S+I       V     +K + W DNEWG++ R++D  + MA
Sbjct:  233 IAVRVPTINVTAIDLSVTVKKPVKASEVNQLLQKAAQGAFHGIVDYTESPLVSIDFNHDPHSAIVDGTQTRVSGAHLIKTLVWCDNEWGFANRMLDTTLAMA 334          
BLAST of CB304393 vs. ExPASy Swiss-Prot
Match: E4PD_SALA4 (D-erythrose-4-phosphate dehydrogenase OS=Salmonella agona (strain SL483) GN=epd PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.223e-13
Identity = 36/102 (35.29%), Postives = 59/102 (57.84%), Query Frame = -3
Query:  343 MAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFGAKAGIVLSKKFVKLVSWYDNEWGYSTRVVDLIVHMA 648
            +A RVPT++V+ +DL+V ++K     E+   ++  ++G   GI+ YTE  +VS DF  D  S+I       V     +K + W DNEWG++ R++D  + MA
Sbjct:  233 IAVRVPTINVTAIDLSVTVKKPVKASEVNQLLQKAAQGAFHGIVDYTESPLVSIDFNHDPHSAIVDGTQTRVSGAHLIKTLVWCDNEWGFANRMLDTTLAMA 334          
BLAST of CB304393 vs. ExPASy Swiss-Prot
Match: E4PD_ENTS8 (D-erythrose-4-phosphate dehydrogenase OS=Enterobacter sakazakii (strain ATCC BAA-894) GN=epd PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.223e-13
Identity = 37/102 (36.27%), Postives = 60/102 (58.82%), Query Frame = -3
Query:  343 MAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFGAKAGIVLSKKFVKLVSWYDNEWGYSTRVVDLIVHMA 648
            +A RVPT++V+ +DL+V ++K     E+   ++  ++G   GI+ YTE  +VSTDF  D  S+I       V     +K + W DNEWG++ R++D  + MA
Sbjct:  233 IAVRVPTINVTAIDLSVTVQKPVKAYEVNLLLQKAAQGAFHGIVDYTELPLVSTDFNHDPHSAIVDGTQTRVSGAHLIKTLVWCDNEWGFANRMLDTTLAMA 334          
BLAST of CB304393 vs. ExPASy Swiss-Prot
Match: E4PD_COLP3 (D-erythrose-4-phosphate dehydrogenase OS=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) GN=epd PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.223e-13
Identity = 39/106 (36.79%), Postives = 63/106 (59.43%), Query Frame = -3
Query:  334 MAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAE-SEGKLKGILGYTEDDVVSTDFVGDSRSSIFGAKAGIVLSKKFVKLVSWYDNEWGYSTRVVDLIVHMAKTQ 648
            +A RVPT++V+ +DL++ +  D    +I  AI+A  S   L G+L YTE+ +VS DF  D  S I       V  K+ +K++ W DNEWG++ R++D  + M + +
Sbjct:  233 IAVRVPTINVTAMDLSLTVNNDVCICDINQAIQAATSNHDLYGVLSYTEEPLVSVDFNHDPHSCIVDGNQTRVSHKRLIKMLVWCDNEWGFANRMLDTAMAMHQAE 338          
BLAST of CB304393 vs. ExPASy Swiss-Prot
Match: E4PD_SALAR (D-erythrose-4-phosphate dehydrogenase OS=Salmonella arizonae (strain ATCC BAA-731 / CDC346-86 / RSK2980) GN=epd PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.598e-13
Identity = 36/102 (35.29%), Postives = 59/102 (57.84%), Query Frame = -3
Query:  343 MAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFGAKAGIVLSKKFVKLVSWYDNEWGYSTRVVDLIVHMA 648
            +A RVPT++V+ +DL+V ++K     E+   ++  ++G   GI+ YTE  +VS DF  D  S+I       V     +K + W DNEWG++ R++D  + MA
Sbjct:  233 IAVRVPTINVTAIDLSVTVKKPIKASEVNQLLQKAAQGAFHGIVDYTESPLVSIDFNHDPHSAIVDGTQTRVSGAHLIKTLVWCDNEWGFANRMLDTTLAMA 334          
The following BLAST results are available for this feature:
BLAST of CB304393 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 342
Match NameE-valueIdentityDescription
E4PD_SALNS1.223e-1335.29D-erythrose-4-phosphate dehydrogenase OS=Salmonell... [more]
E4PD_SALHS1.223e-1335.29D-erythrose-4-phosphate dehydrogenase OS=Salmonell... [more]
E4PD_SALG21.223e-1335.29D-erythrose-4-phosphate dehydrogenase OS=Salmonell... [more]
E4PD_SALEP1.223e-1335.29D-erythrose-4-phosphate dehydrogenase OS=Salmonell... [more]
E4PD_SALDC1.223e-1335.29D-erythrose-4-phosphate dehydrogenase OS=Salmonell... [more]
E4PD_SALCH1.223e-1335.29D-erythrose-4-phosphate dehydrogenase OS=Salmonell... [more]
E4PD_SALA41.223e-1335.29D-erythrose-4-phosphate dehydrogenase OS=Salmonell... [more]
E4PD_ENTS81.223e-1336.27D-erythrose-4-phosphate dehydrogenase OS=Enterobac... [more]
E4PD_COLP31.223e-1336.79D-erythrose-4-phosphate dehydrogenase OS=Colwellia... [more]
E4PD_SALAR1.598e-1335.29D-erythrose-4-phosphate dehydrogenase OS=Salmonell... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0001_IIIaR_B10 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0001_IIIaR_B10 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304393 ID=CB304393; Name=CB304393; organism=Citrus sinensis; type=EST; length=653bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTCGCAGCTGAAGAACAGGTCTT
CGATACTAACTAGATGAAAAATTATAAAAGCAAGTTTCCAATAGACAATT
GTTTTCTCGCTAACAAAACATAAGTTGGTTCACCAACTCTTCTTGCATAC
TACAAGGGAAAATCTAAGCACAACCCTGCATGAGCAGGTAAGGCTCTGGA
TAATGTCTTGGAAACAATTTTATTTAAACTCAGACCCTCTACATAGAAAC
ACAAACACCACATTTAGCGCAAAGAAACACCACACTTAGCACAACTAAGC
GTGTTACATACTCAAGCCACGCCGAGTAAGTTACTGGGTCTTCGCCATGT
GGACAATCAAATCCACCACACGAGTACTGTAGCCCCACTCATTGTCATAC
CATGAGACAAGCTTCACAAATTTCTTACTCAAAACAATACCAGCCTTGGC
ACCAAAGATACTTGACCTACTGTCACCAACAAAGTCGGTGGATACCACAT
CATCCTCAGTGTATCCCAAGATACCCTTTAGTTTCCCCTCTGACTCCGCC
TTGATGGCAGCTTTGATTTCATCATAAGAAGCGTCCTTCTCCAGCCTCAC
TGTGAGGTCAACCACTGAGACATCAACAGTGGGTACACGGAAAGCCATAC
CAG
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