CB304393

Overview
NameCB304393
Unique NameCB304393
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length653
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2038 contig Csv1_Contig2038:37..689. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304393 vs. ExPASy Swiss-Prot
Match: E4PD_PROMH (D-erythrose-4-phosphate dehydrogenase OS=Proteus mirabilis (strain HI4320) GN=epd PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.725e-13
Identity = 36/104 (34.62%), Postives = 62/104 (59.62%), Query Frame = -3
Query:  337 MAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFGAKAGIVLSKKFVKLVSWYDNEWGYSTRVVDLIVHMAKT 648
            ++ RVPT++V+ +DL+V ++   +  ++   I+  + G  +GI+ YTE  +VSTDF  D  S+I       V  +  +K + W DNEWG++ R++D  + MA T
Sbjct:  233 ISVRVPTINVTAIDLSVTVKNAVNVLDVNKLIQKSATGAFRGIVDYTELPLVSTDFNHDPHSAIVDGTQTRVSGQHLIKTLVWCDNEWGFANRMLDTTLAMAAT 336          
BLAST of CB304393 vs. ExPASy Swiss-Prot
Match: E4PD_PHOPR (D-erythrose-4-phosphate dehydrogenase OS=Photobacterium profundum GN=epd PE=3 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 2.725e-13
Identity = 36/101 (35.64%), Postives = 62/101 (61.39%), Query Frame = -3
Query:  346 MAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFGAKAGIVLSKKFVKLVSWYDNEWGYSTRVVDLIVHM 648
            ++ RVPT++V+ +DL+V ++ +   +++  A+   S   L+GI+ YTE  +VS DF  D  S+I       V +K  +KL+ W DNEWG++ R++D  + M
Sbjct:  238 ISVRVPTINVTAMDLSVTVKTNVKVNDVNQALSEVSRCTLEGIVDYTEAPLVSIDFNHDPHSAIVDGTQTRVSNKHLIKLLVWCDNEWGFANRMLDTALAM 338          
BLAST of CB304393 vs. ExPASy Swiss-Prot
Match: E4PD_ERWT9 (D-erythrose-4-phosphate dehydrogenase OS=Erwinia tasmaniensis (strain DSM 17950 / Et1/99) GN=epd PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.559e-13
Identity = 37/102 (36.27%), Postives = 58/102 (56.86%), Query Frame = -3
Query:  343 MAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFGAKAGIVLSKKFVKLVSWYDNEWGYSTRVVDLIVHMA 648
            +A RVPT++V+ +DL+V +       E+ A + + S G   GI+ YTE  +VS DF  D  S+I       V  +  +K + W DNEWG++ R++D  + MA
Sbjct:  233 IAVRVPTINVTAIDLSVSVRDAVKASEVNALLHSASLGAFSGIVDYTELPLVSIDFNHDPHSAIVDGTQTRVSGQHLIKTLVWCDNEWGFANRMIDTTLAMA 334          
BLAST of CB304393 vs. ExPASy Swiss-Prot
Match: E4PD_CITK8 (D-erythrose-4-phosphate dehydrogenase OS=Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696) GN=epd PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.649e-13
Identity = 36/102 (35.29%), Postives = 59/102 (57.84%), Query Frame = -3
Query:  343 MAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFGAKAGIVLSKKFVKLVSWYDNEWGYSTRVVDLIVHMA 648
            +A RVPT++V+ +DL+V ++K    +E+   ++  + G   GI+ YTE  +VS DF  D  S+I       V     +K + W DNEWG++ R++D  + MA
Sbjct:  233 IAVRVPTINVTAIDLSVTVKKPVKANEVNQLLQKAAHGAFHGIVDYTELPLVSIDFNHDPHSAIVDGTQTRVSGAHLIKTLVWCDNEWGFANRMLDTTLAMA 334          
BLAST of CB304393 vs. ExPASy Swiss-Prot
Match: E4PD_PECCP (D-erythrose-4-phosphate dehydrogenase OS=Pectobacterium carotovorum subsp. carotovorum (strain PC1) GN=epd PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.071e-13
Identity = 36/102 (35.29%), Postives = 60/102 (58.82%), Query Frame = -3
Query:  343 MAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFGAKAGIVLSKKFVKLVSWYDNEWGYSTRVVDLIVHMA 648
            ++ RVPT++V+ +DL+V + K  + +EI A ++  +    +GI+ YTE  +VS DF  D  S+I       V  +  +K + W DNEWG++ R++D    MA
Sbjct:  233 ISVRVPTINVTAIDLSVSVRKAVNVNEINALLQKSAHESFRGIVDYTELPLVSADFNHDPHSAIVDGTQTRVSGQHLIKTLVWCDNEWGFANRMLDTTRAMA 334          
BLAST of CB304393 vs. ExPASy Swiss-Prot
Match: E4PD_ERWCT (D-erythrose-4-phosphate dehydrogenase OS=Erwinia carotovora subsp. atroseptica GN=epd PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.071e-13
Identity = 36/102 (35.29%), Postives = 60/102 (58.82%), Query Frame = -3
Query:  343 MAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFGAKAGIVLSKKFVKLVSWYDNEWGYSTRVVDLIVHMA 648
            ++ RVPT++V+ +DL+V + K  + +EI A ++  +    +GI+ YTE  +VS DF  D  S+I       V  +  +K + W DNEWG++ R++D    MA
Sbjct:  233 ISVRVPTINVTAIDLSVSVRKAVNVNEINALLQKSAHESFRGIVDYTELPLVSADFNHDPHSAIVDGTQTRVSGQHLIKTLVWCDNEWGFANRMLDTTRAMA 334          
BLAST of CB304393 vs. ExPASy Swiss-Prot
Match: E4PD_YERPS (D-erythrose-4-phosphate dehydrogenase OS=Yersinia pseudotuberculosis GN=epd PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 7.929e-13
Identity = 35/104 (33.65%), Postives = 60/104 (57.69%), Query Frame = -3
Query:  337 MAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFGAKAGIVLSKKFVKLVSWYDNEWGYSTRVVDLIVHMAKT 648
            ++ RVPT++V+ +DL+V +       E+   ++  + G  +GI+ YTE  +VS DF  D  S+I       V  +  +K + W DNEWG++ R++D  + MAK+
Sbjct:  233 ISVRVPTINVTAIDLSVSVTHPVGVAEVNQLLQKAARGAFRGIVDYTELPLVSMDFNHDPHSAIVDGTQTRVSGQHLIKTLVWCDNEWGFANRMLDTTLAMAKS 336          
BLAST of CB304393 vs. ExPASy Swiss-Prot
Match: E4PD_YERPN (D-erythrose-4-phosphate dehydrogenase OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=epd PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 7.929e-13
Identity = 35/104 (33.65%), Postives = 60/104 (57.69%), Query Frame = -3
Query:  337 MAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFGAKAGIVLSKKFVKLVSWYDNEWGYSTRVVDLIVHMAKT 648
            ++ RVPT++V+ +DL+V +       E+   ++  + G  +GI+ YTE  +VS DF  D  S+I       V  +  +K + W DNEWG++ R++D  + MAK+
Sbjct:  233 ISVRVPTINVTAIDLSVSVTHPVGVAEVNQLLQKAARGAFRGIVDYTELPLVSMDFNHDPHSAIVDGTQTRVSGQHLIKTLVWCDNEWGFANRMLDTTLAMAKS 336          
BLAST of CB304393 vs. ExPASy Swiss-Prot
Match: E4PD_YERPE (D-erythrose-4-phosphate dehydrogenase OS=Yersinia pestis GN=epd PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 7.929e-13
Identity = 35/104 (33.65%), Postives = 60/104 (57.69%), Query Frame = -3
Query:  337 MAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFGAKAGIVLSKKFVKLVSWYDNEWGYSTRVVDLIVHMAKT 648
            ++ RVPT++V+ +DL+V +       E+   ++  + G  +GI+ YTE  +VS DF  D  S+I       V  +  +K + W DNEWG++ R++D  + MAK+
Sbjct:  233 ISVRVPTINVTAIDLSVSVTHPVGVAEVNQLLQKAARGAFRGIVDYTELPLVSMDFNHDPHSAIVDGTQTRVSGQHLIKTLVWCDNEWGFANRMLDTTLAMAKS 336          
BLAST of CB304393 vs. ExPASy Swiss-Prot
Match: E4PD_YERPA (D-erythrose-4-phosphate dehydrogenase OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=epd PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 7.929e-13
Identity = 35/104 (33.65%), Postives = 60/104 (57.69%), Query Frame = -3
Query:  337 MAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFGAKAGIVLSKKFVKLVSWYDNEWGYSTRVVDLIVHMAKT 648
            ++ RVPT++V+ +DL+V +       E+   ++  + G  +GI+ YTE  +VS DF  D  S+I       V  +  +K + W DNEWG++ R++D  + MAK+
Sbjct:  233 ISVRVPTINVTAIDLSVSVTHPVGVAEVNQLLQKAARGAFRGIVDYTELPLVSMDFNHDPHSAIVDGTQTRVSGQHLIKTLVWCDNEWGFANRMLDTTLAMAKS 336          
The following BLAST results are available for this feature:
BLAST of CB304393 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 342
Match NameE-valueIdentityDescription
E4PD_PROMH2.725e-1334.62D-erythrose-4-phosphate dehydrogenase OS=Proteus m... [more]
E4PD_PHOPR2.725e-1335.64D-erythrose-4-phosphate dehydrogenase OS=Photobact... [more]
E4PD_ERWT93.559e-1336.27D-erythrose-4-phosphate dehydrogenase OS=Erwinia t... [more]
E4PD_CITK84.649e-1335.29D-erythrose-4-phosphate dehydrogenase OS=Citrobact... [more]
E4PD_PECCP6.071e-1335.29D-erythrose-4-phosphate dehydrogenase OS=Pectobact... [more]
E4PD_ERWCT6.071e-1335.29D-erythrose-4-phosphate dehydrogenase OS=Erwinia c... [more]
E4PD_YERPS7.929e-1333.65D-erythrose-4-phosphate dehydrogenase OS=Yersinia ... [more]
E4PD_YERPN7.929e-1333.65D-erythrose-4-phosphate dehydrogenase OS=Yersinia ... [more]
E4PD_YERPE7.929e-1333.65D-erythrose-4-phosphate dehydrogenase OS=Yersinia ... [more]
E4PD_YERPA7.929e-1333.65D-erythrose-4-phosphate dehydrogenase OS=Yersinia ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionFLAVEDO0001_IIIaR_B10 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0001_IIIaR_B10 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304393 ID=CB304393; Name=CB304393; organism=Citrus sinensis; type=EST; length=653bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTCGCAGCTGAAGAACAGGTCTT
CGATACTAACTAGATGAAAAATTATAAAAGCAAGTTTCCAATAGACAATT
GTTTTCTCGCTAACAAAACATAAGTTGGTTCACCAACTCTTCTTGCATAC
TACAAGGGAAAATCTAAGCACAACCCTGCATGAGCAGGTAAGGCTCTGGA
TAATGTCTTGGAAACAATTTTATTTAAACTCAGACCCTCTACATAGAAAC
ACAAACACCACATTTAGCGCAAAGAAACACCACACTTAGCACAACTAAGC
GTGTTACATACTCAAGCCACGCCGAGTAAGTTACTGGGTCTTCGCCATGT
GGACAATCAAATCCACCACACGAGTACTGTAGCCCCACTCATTGTCATAC
CATGAGACAAGCTTCACAAATTTCTTACTCAAAACAATACCAGCCTTGGC
ACCAAAGATACTTGACCTACTGTCACCAACAAAGTCGGTGGATACCACAT
CATCCTCAGTGTATCCCAAGATACCCTTTAGTTTCCCCTCTGACTCCGCC
TTGATGGCAGCTTTGATTTCATCATAAGAAGCGTCCTTCTCCAGCCTCAC
TGTGAGGTCAACCACTGAGACATCAACAGTGGGTACACGGAAAGCCATAC
CAG
back to top