CB304393

Overview
NameCB304393
Unique NameCB304393
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length653
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2038 contig Csv1_Contig2038:37..689. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304393 vs. ExPASy Swiss-Prot
Match: E4PD_VIBVU (D-erythrose-4-phosphate dehydrogenase OS=Vibrio vulnificus GN=epd PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 7.929e-13
Identity = 37/105 (35.24%), Postives = 61/105 (58.10%), Query Frame = -3
Query:  334 MAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFGAKAGIVLSKKFVKLVSWYDNEWGYSTRVVDLIVHMAKTQ 648
            ++ RVPTV+V+ +DL+V +  +   +++   I   S+  L+GI+ YTE  +VS DF  D  S+I       V +   VK++ W DNEWG++ R++D  + M   Q
Sbjct:  242 ISVRVPTVNVTAMDLSVTINTNVKVNDVNQTIVNASQCTLRGIVDYTEAPLVSIDFNHDPHSAIVDGSQTRVSNGHLVKMLVWCDNEWGFANRMLDTALAMQAAQ 346          
BLAST of CB304393 vs. ExPASy Swiss-Prot
Match: E4PD_ECOK1 (D-erythrose-4-phosphate dehydrogenase OS=Escherichia coli O1:K1 / APEC GN=epd PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 7.929e-13
Identity = 35/102 (34.31%), Postives = 59/102 (57.84%), Query Frame = -3
Query:  343 MAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFGAKAGIVLSKKFVKLVSWYDNEWGYSTRVVDLIVHMA 648
            +A RVPT++V+ +DL+V ++K    +E+   ++  ++G   GI+ Y E  +VS DF  D  S+I       V     +K + W DNEWG++ R++D  + MA
Sbjct:  233 IAVRVPTINVTAIDLSVTVKKPVKANEVNLLLQKAAQGAFHGIVDYAELPLVSVDFNHDPHSAIVDGTQTRVSGAHLIKTLVWCDNEWGFANRMLDTTLAMA 334          
BLAST of CB304393 vs. ExPASy Swiss-Prot
Match: E4PD_ECO45 (D-erythrose-4-phosphate dehydrogenase OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=epd PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 7.929e-13
Identity = 35/102 (34.31%), Postives = 59/102 (57.84%), Query Frame = -3
Query:  343 MAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFGAKAGIVLSKKFVKLVSWYDNEWGYSTRVVDLIVHMA 648
            +A RVPT++V+ +DL+V ++K    +E+   ++  ++G   GI+ Y E  +VS DF  D  S+I       V     +K + W DNEWG++ R++D  + MA
Sbjct:  233 IAVRVPTINVTAIDLSVTVKKPVKANEVNLLLQKAAQGAFHGIVDYAELPLVSVDFNHDPHSAIVDGTQTRVSGAHLIKTLVWCDNEWGFANRMLDTTLAMA 334          
BLAST of CB304393 vs. ExPASy Swiss-Prot
Match: G3P1_STAES (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Staphylococcus epidermidis (strain ATCC 12228) GN=gapA1 PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.036e-12
Identity = 41/108 (37.96%), Postives = 67/108 (62.04%), Query Frame = -3
Query:  340 GMAFRVPTVDVSVVDLTVRLEK-DASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFGAKAGIVLS---KKFVKLVSWYDNEWGYSTRVVDLIVHMAK 651
            G A RVP    S+ +LTV L+K D + D++ +A+K  S+       GYTED++VS+D VG +  S+F A    V++   ++ VK+ +WYDNE  Y+ ++V  + H+A+
Sbjct:  230 GGAQRVPVATGSLTELTVVLDKQDVTVDQVNSAMKQASDESF----GYTEDEIVSSDIVGMTYGSLFDATQTRVMTVGDRQLVKVAAWYDNEMSYTAQLVRTLAHLAE 333          
BLAST of CB304393 vs. ExPASy Swiss-Prot
Match: G3P1_STAEQ (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=gapA1 PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.036e-12
Identity = 41/108 (37.96%), Postives = 67/108 (62.04%), Query Frame = -3
Query:  340 GMAFRVPTVDVSVVDLTVRLEK-DASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFGAKAGIVLS---KKFVKLVSWYDNEWGYSTRVVDLIVHMAK 651
            G A RVP    S+ +LTV L+K D + D++ +A+K  S+       GYTED++VS+D VG +  S+F A    V++   ++ VK+ +WYDNE  Y+ ++V  + H+A+
Sbjct:  230 GGAQRVPVATGSLTELTVVLDKQDVTVDQVNSAMKQASDESF----GYTEDEIVSSDIVGMTYGSLFDATQTRVMTVGDRQLVKVAAWYDNEMSYTAQLVRTLAHLAE 333          
BLAST of CB304393 vs. ExPASy Swiss-Prot
Match: E4PD_VIBVY (D-erythrose-4-phosphate dehydrogenase OS=Vibrio vulnificus (strain YJ016) GN=epd PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.766e-12
Identity = 36/101 (35.64%), Postives = 60/101 (59.41%), Query Frame = -3
Query:  346 MAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFGAKAGIVLSKKFVKLVSWYDNEWGYSTRVVDLIVHM 648
            ++ RVPTV+V+ +DL+V +  +   +++   I   S+  L+GI+ YTE  +VS DF  D  S+I       V +   VK++ W DNEWG++ R++D  + M
Sbjct:  242 ISVRVPTVNVTAMDLSVTINTNVKVNDVNQTIVNASQCTLRGIVDYTEAPLVSIDFNHDPHSAIVDGSQTRVSNGHLVKMLVWCDNEWGFANRMLDTALAM 342          
BLAST of CB304393 vs. ExPASy Swiss-Prot
Match: E4PD_PHOLL (D-erythrose-4-phosphate dehydrogenase OS=Photorhabdus luminescens subsp. laumondii GN=epd PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.766e-12
Identity = 34/102 (33.33%), Postives = 61/102 (59.80%), Query Frame = -3
Query:  343 MAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFGAKAGIVLSKKFVKLVSWYDNEWGYSTRVVDLIVHMA 648
            ++ RVPT++V+ +DL+V ++   + ++I   ++  +    +GI+ YTE  +VSTDF  D  S+I       V  +  +K + W DNEWG++ R++D  + MA
Sbjct:  233 ISVRVPTINVTAIDLSVTVKSSVTVNKINELMQKSAATSFRGIVDYTELPLVSTDFNHDPHSAIVDGTQTRVSGQHLIKTLVWCDNEWGFANRMLDTTLAMA 334          
BLAST of CB304393 vs. ExPASy Swiss-Prot
Match: E4PD_TOLAT (D-erythrose-4-phosphate dehydrogenase OS=Tolumonas auensis (strain DSM 9187 / TA4) GN=epd PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.013e-12
Identity = 34/103 (33.01%), Postives = 60/103 (58.25%), Query Frame = -3
Query:  340 MAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFGAKAGIVLSKKFVKLVSWYDNEWGYSTRVVDLIVHMAK 648
            ++ RVPT++V+ +DL+V +    S  ++   ++  ++G  + I+ YTE  +VS DF  D  S+I       V  K  +K + W DNEWG++ R++D  + MA+
Sbjct:  233 ISVRVPTINVTAIDLSVTVTNAVSVLDVNTMLQRAAKGDFRSIVDYTELPLVSIDFNHDPHSAIVDGTQTRVSGKHLIKTLVWCDNEWGFANRMLDTTLMMAR 335          
BLAST of CB304393 vs. ExPASy Swiss-Prot
Match: E4PD_VIBPA (D-erythrose-4-phosphate dehydrogenase OS=Vibrio parahaemolyticus GN=epd PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.935e-12
Identity = 35/101 (34.65%), Postives = 60/101 (59.41%), Query Frame = -3
Query:  346 MAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFGAKAGIVLSKKFVKLVSWYDNEWGYSTRVVDLIVHM 648
            ++ RVPTV+V+ +DL+V +  +   +++   I   S+  L+ I+ YTE  +VS DF  D  S+I       V + + VK++ W DNEWG++ R++D  + M
Sbjct:  237 ISVRVPTVNVTAMDLSVTINTNVKVNDVNQTIVNASQCTLRNIVDYTESPLVSIDFNHDPHSAIVDGTQTRVSNGQLVKMLVWCDNEWGFANRMLDTALAM 337          
BLAST of CB304393 vs. ExPASy Swiss-Prot
Match: E4PD_VIBHB (D-erythrose-4-phosphate dehydrogenase OS=Vibrio harveyi (strain ATCC BAA-1116 / BB120) GN=epd PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.140e-12
Identity = 35/101 (34.65%), Postives = 60/101 (59.41%), Query Frame = -3
Query:  346 MAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFGAKAGIVLSKKFVKLVSWYDNEWGYSTRVVDLIVHM 648
            ++ RVPTV+V+ +DL+V +  +   +++   I   S+  L+ I+ YTE  +VS DF  D  S+I       V + + VK++ W DNEWG++ R++D  + M
Sbjct:  237 ISVRVPTVNVTAMDLSVTISTNVKVNDVNQTIVNASQCTLRDIVDYTESPLVSIDFNHDPHSAIVDGTQTRVSNGQLVKMLVWCDNEWGFANRMLDTALAM 337          
The following BLAST results are available for this feature:
BLAST of CB304393 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 342
Match NameE-valueIdentityDescription
E4PD_VIBVU7.929e-1335.24D-erythrose-4-phosphate dehydrogenase OS=Vibrio vu... [more]
E4PD_ECOK17.929e-1334.31D-erythrose-4-phosphate dehydrogenase OS=Escherich... [more]
E4PD_ECO457.929e-1334.31D-erythrose-4-phosphate dehydrogenase OS=Escherich... [more]
G3P1_STAES1.036e-1237.96Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Stap... [more]
G3P1_STAEQ1.036e-1237.96Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Stap... [more]
E4PD_VIBVY1.766e-1235.64D-erythrose-4-phosphate dehydrogenase OS=Vibrio vu... [more]
E4PD_PHOLL1.766e-1233.33D-erythrose-4-phosphate dehydrogenase OS=Photorhab... [more]
E4PD_TOLAT3.013e-1233.01D-erythrose-4-phosphate dehydrogenase OS=Tolumonas... [more]
E4PD_VIBPA3.935e-1234.65D-erythrose-4-phosphate dehydrogenase OS=Vibrio pa... [more]
E4PD_VIBHB5.140e-1234.65D-erythrose-4-phosphate dehydrogenase OS=Vibrio ha... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0001_IIIaR_B10 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0001_IIIaR_B10 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304393 ID=CB304393; Name=CB304393; organism=Citrus sinensis; type=EST; length=653bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTCGCAGCTGAAGAACAGGTCTT
CGATACTAACTAGATGAAAAATTATAAAAGCAAGTTTCCAATAGACAATT
GTTTTCTCGCTAACAAAACATAAGTTGGTTCACCAACTCTTCTTGCATAC
TACAAGGGAAAATCTAAGCACAACCCTGCATGAGCAGGTAAGGCTCTGGA
TAATGTCTTGGAAACAATTTTATTTAAACTCAGACCCTCTACATAGAAAC
ACAAACACCACATTTAGCGCAAAGAAACACCACACTTAGCACAACTAAGC
GTGTTACATACTCAAGCCACGCCGAGTAAGTTACTGGGTCTTCGCCATGT
GGACAATCAAATCCACCACACGAGTACTGTAGCCCCACTCATTGTCATAC
CATGAGACAAGCTTCACAAATTTCTTACTCAAAACAATACCAGCCTTGGC
ACCAAAGATACTTGACCTACTGTCACCAACAAAGTCGGTGGATACCACAT
CATCCTCAGTGTATCCCAAGATACCCTTTAGTTTCCCCTCTGACTCCGCC
TTGATGGCAGCTTTGATTTCATCATAAGAAGCGTCCTTCTCCAGCCTCAC
TGTGAGGTCAACCACTGAGACATCAACAGTGGGTACACGGAAAGCCATAC
CAG
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