CB304393

Overview
NameCB304393
Unique NameCB304393
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length653
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB304393 vs. ExPASy Swiss-Prot
Match: E4PD_VIBFM (D-erythrose-4-phosphate dehydrogenase OS=Vibrio fischeri (strain MJ11) GN=epd PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.140e-12
Identity = 37/103 (35.92%), Postives = 59/103 (57.28%), Query Frame = -3
Query:  340 MAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFGAKAGIVLSKKFVKLVSWYDNEWGYSTRVVDLIVHMAK 648
            ++ RVPTV+V+ +DL+V +  +   ++I   I   S   L  I+ YTE  +VS DF  D  S+I       V +   VK++ W DNEWG++ R++D  + M+K
Sbjct:  237 ISVRVPTVNVTAMDLSVTINTNVKVNDINQTIVNASRCTLHNIVDYTEAPLVSIDFNHDPHSAIVDGSQTRVSNGHLVKMLVWCDNEWGFANRMLDTALAMSK 339          
BLAST of CB304393 vs. ExPASy Swiss-Prot
Match: E4PD_VIBF1 (D-erythrose-4-phosphate dehydrogenase OS=Vibrio fischeri (strain ATCC 700601 / ES114) GN=epd PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.140e-12
Identity = 37/103 (35.92%), Postives = 59/103 (57.28%), Query Frame = -3
Query:  340 MAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFGAKAGIVLSKKFVKLVSWYDNEWGYSTRVVDLIVHMAK 648
            ++ RVPTV+V+ +DL+V +  +   ++I   I   S   L  I+ YTE  +VS DF  D  S+I       V +   VK++ W DNEWG++ R++D  + M+K
Sbjct:  237 ISVRVPTVNVTAMDLSVTINTNVKVNDINQTIVNASRCTLHNIVDYTEAPLVSIDFNHDPHSAIVDGSQTRVSNGHLVKMLVWCDNEWGFANRMLDTALAMSK 339          
BLAST of CB304393 vs. ExPASy Swiss-Prot
Match: E4PD_ALISL (D-erythrose-4-phosphate dehydrogenase OS=Aliivibrio salmonicida (strain LFI1238) GN=epd PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 6.712e-12
Identity = 37/103 (35.92%), Postives = 59/103 (57.28%), Query Frame = -3
Query:  340 MAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFGAKAGIVLSKKFVKLVSWYDNEWGYSTRVVDLIVHMAK 648
            ++ RVPTV+V+ +DL+V +  +   ++I   I   S+  L  I+ YTE  +VS DF  D  S+I       V +   VK++ W DNEWG++ R++D  + M K
Sbjct:  237 ISVRVPTVNVTAMDLSVTINTNVKVNDINQTIVNASQCTLHNIVDYTEAPLVSIDFNHDPHSAIVDGSQTRVSNGHLVKMLVWCDNEWGFANRMLDTALVMKK 339          
BLAST of CB304393 vs. ExPASy Swiss-Prot
Match: G3P_CLOPA (Glyceraldehyde-3-phosphate dehydrogenase OS=Clostridium pasteurianum GN=gap PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.145e-11
Identity = 44/107 (41.12%), Postives = 61/107 (57.01%), Query Frame = -3
Query:  340 GMAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFGA---KAGIVLSKKFVKLVSWYDNEWGYSTRVVDLIVHMAK 651
            G A RVP    SV +L   L+K+ + +EI AA+K  +        GYTED++VS D VG S  S+F A   K   V   + VK VSWYDNE  Y++++V  + + AK
Sbjct:  229 GNAQRVPVPTGSVTELISVLKKNVTVEEINAAMKEAANESF----GYTEDEIVSADVVGISYGSLFDATLTKIVDVDGSQLVKTVSWYDNEMSYTSQLVRTLEYFAK 331          
BLAST of CB304393 vs. ExPASy Swiss-Prot
Match: E4PD_EDWI9 (D-erythrose-4-phosphate dehydrogenase OS=Edwardsiella ictaluri (strain 93-146) GN=epd PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.145e-11
Identity = 33/103 (32.04%), Postives = 59/103 (57.28%), Query Frame = -3
Query:  340 MAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFGAKAGIVLSKKFVKLVSWYDNEWGYSTRVVDLIVHMAK 648
            ++ RVPT++V+ +DL+V +      +++   ++  +     GI+ YTE  +VSTDF  D  S+I       V  +  +K + W DNEWG++ R++D  + MA+
Sbjct:  233 ISVRVPTLNVTAIDLSVSVRTPVRVEQVNHLLQKAASTAFHGIVDYTELPLVSTDFNHDPHSAIVDGTQTRVSGRHLIKTLVWCDNEWGFANRMLDTTLAMAR 335          
BLAST of CB304393 vs. ExPASy Swiss-Prot
Match: G3P1_STAAW (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Staphylococcus aureus (strain MW2) GN=gapA1 PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.495e-11
Identity = 41/108 (37.96%), Postives = 65/108 (60.19%), Query Frame = -3
Query:  340 GMAFRVPTVDVSVVDLTVRLEK-DASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFGAKAGIVLS---KKFVKLVSWYDNEWGYSTRVVDLIVHMAK 651
            G A RVP    S+ +LTV LEK D + +++  A+K  S        GYTED++VS+D VG +  S+F A    V+S   ++ VK+ +WYDNE  Y+ ++V  + ++A+
Sbjct:  230 GGAQRVPVATGSLTELTVVLEKQDVTVEQVNEAMKNASNESF----GYTEDEIVSSDVVGMTYGSLFDATQTRVMSVGDRQLVKVAAWYDNEMSYTAQLVRTLAYLAE 333          
BLAST of CB304393 vs. ExPASy Swiss-Prot
Match: G3P1_STAAU (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Staphylococcus aureus GN=gapA1 PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.495e-11
Identity = 41/108 (37.96%), Postives = 65/108 (60.19%), Query Frame = -3
Query:  340 GMAFRVPTVDVSVVDLTVRLEK-DASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFGAKAGIVLS---KKFVKLVSWYDNEWGYSTRVVDLIVHMAK 651
            G A RVP    S+ +LTV LEK D + +++  A+K  S        GYTED++VS+D VG +  S+F A    V+S   ++ VK+ +WYDNE  Y+ ++V  + ++A+
Sbjct:  230 GGAQRVPVATGSLTELTVVLEKQDVTVEQVNEAMKNASNESF----GYTEDEIVSSDVVGMTYGSLFDATQTRVMSVGDRQLVKVAAWYDNEMSYTAQLVRTLAYLAE 333          
BLAST of CB304393 vs. ExPASy Swiss-Prot
Match: G3P1_STAAS (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Staphylococcus aureus (strain MSSA476) GN=gapA1 PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.495e-11
Identity = 41/108 (37.96%), Postives = 65/108 (60.19%), Query Frame = -3
Query:  340 GMAFRVPTVDVSVVDLTVRLEK-DASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFGAKAGIVLS---KKFVKLVSWYDNEWGYSTRVVDLIVHMAK 651
            G A RVP    S+ +LTV LEK D + +++  A+K  S        GYTED++VS+D VG +  S+F A    V+S   ++ VK+ +WYDNE  Y+ ++V  + ++A+
Sbjct:  230 GGAQRVPVATGSLTELTVVLEKQDVTVEQVNEAMKNASNESF----GYTEDEIVSSDVVGMTYGSLFDATQTRVMSVGDRQLVKVAAWYDNEMSYTAQLVRTLAYLAE 333          
BLAST of CB304393 vs. ExPASy Swiss-Prot
Match: G3P1_STAAR (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Staphylococcus aureus (strain MRSA252) GN=gapA1 PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.495e-11
Identity = 41/108 (37.96%), Postives = 65/108 (60.19%), Query Frame = -3
Query:  340 GMAFRVPTVDVSVVDLTVRLEK-DASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFGAKAGIVLS---KKFVKLVSWYDNEWGYSTRVVDLIVHMAK 651
            G A RVP    S+ +LTV LEK D + +++  A+K  S        GYTED++VS+D VG +  S+F A    V+S   ++ VK+ +WYDNE  Y+ ++V  + ++A+
Sbjct:  230 GGAQRVPVATGSLTELTVVLEKQDVTVEQVNEAMKNASNESF----GYTEDEIVSSDVVGMTYGSLFDATQTRVMSVGDRQLVKVAAWYDNEMSYTAQLVRTLAYLAE 333          
BLAST of CB304393 vs. ExPASy Swiss-Prot
Match: G3P1_STAAN (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Staphylococcus aureus (strain N315) GN=gapA1 PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.495e-11
Identity = 41/108 (37.96%), Postives = 65/108 (60.19%), Query Frame = -3
Query:  340 GMAFRVPTVDVSVVDLTVRLEK-DASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFGAKAGIVLS---KKFVKLVSWYDNEWGYSTRVVDLIVHMAK 651
            G A RVP    S+ +LTV LEK D + +++  A+K  S        GYTED++VS+D VG +  S+F A    V+S   ++ VK+ +WYDNE  Y+ ++V  + ++A+
Sbjct:  230 GGAQRVPVATGSLTELTVVLEKQDVTVEQVNEAMKNASNESF----GYTEDEIVSSDVVGMTYGSLFDATQTRVMSVGDRQLVKVAAWYDNEMSYTAQLVRTLAYLAE 333          
The following BLAST results are available for this feature:
BLAST of CB304393 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 342
Match NameE-valueIdentityDescription
E4PD_VIBFM5.140e-1235.92D-erythrose-4-phosphate dehydrogenase OS=Vibrio fi... [more]
E4PD_VIBF15.140e-1235.92D-erythrose-4-phosphate dehydrogenase OS=Vibrio fi... [more]
E4PD_ALISL6.712e-1235.92D-erythrose-4-phosphate dehydrogenase OS=Aliivibri... [more]
G3P_CLOPA1.145e-1141.12Glyceraldehyde-3-phosphate dehydrogenase OS=Clostr... [more]
E4PD_EDWI91.145e-1132.04D-erythrose-4-phosphate dehydrogenase OS=Edwardsie... [more]
G3P1_STAAW1.495e-1137.96Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Stap... [more]
G3P1_STAAU1.495e-1137.96Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Stap... [more]
G3P1_STAAS1.495e-1137.96Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Stap... [more]
G3P1_STAAR1.495e-1137.96Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Stap... [more]
G3P1_STAAN1.495e-1137.96Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Stap... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0001_IIIaR_B10 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0001_IIIaR_B10 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304393 ID=CB304393; Name=CB304393; organism=Citrus sinensis; type=EST; length=653bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTCGCAGCTGAAGAACAGGTCTT
CGATACTAACTAGATGAAAAATTATAAAAGCAAGTTTCCAATAGACAATT
GTTTTCTCGCTAACAAAACATAAGTTGGTTCACCAACTCTTCTTGCATAC
TACAAGGGAAAATCTAAGCACAACCCTGCATGAGCAGGTAAGGCTCTGGA
TAATGTCTTGGAAACAATTTTATTTAAACTCAGACCCTCTACATAGAAAC
ACAAACACCACATTTAGCGCAAAGAAACACCACACTTAGCACAACTAAGC
GTGTTACATACTCAAGCCACGCCGAGTAAGTTACTGGGTCTTCGCCATGT
GGACAATCAAATCCACCACACGAGTACTGTAGCCCCACTCATTGTCATAC
CATGAGACAAGCTTCACAAATTTCTTACTCAAAACAATACCAGCCTTGGC
ACCAAAGATACTTGACCTACTGTCACCAACAAAGTCGGTGGATACCACAT
CATCCTCAGTGTATCCCAAGATACCCTTTAGTTTCCCCTCTGACTCCGCC
TTGATGGCAGCTTTGATTTCATCATAAGAAGCGTCCTTCTCCAGCCTCAC
TGTGAGGTCAACCACTGAGACATCAACAGTGGGTACACGGAAAGCCATAC
CAG
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