CB304394

Overview
NameCB304394
Unique NameCB304394
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length586
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13846 contig Csv1_Contig13846:1..560. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304394 vs. ExPASy Swiss-Prot
Match: HSP70_CLAHE (Heat shock 70 kDa protein OS=Cladosporium herbarum GN=HSP70 PE=1 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.352e-23
Identity = 48/108 (44.44%), Postives = 76/108 (70.37%), Query Frame = -3
Query:  261 EEIEKMVQEAEKYKAEDDEHKKKVEAKNALENYAYNMRNTIKDEKISAKLPTADKKKIEDAIEEAIQWLDGNQLAEADEFEDKMKELECICNPIIAKMYQGGGADAGA 584
            EEIE+M+ +AEKYK ED+    +++AKN LE+YAY+++NT+ D K+  KL   DK+ +  AI++ + W+D NQ A  +E+E + K+LE + NP++ K+Y   GA+ GA
Sbjct:  512 EEIERMLADAEKYKEEDEAEAGRIQAKNGLESYAYSLKNTVSDPKVEEKLSAEDKETLTGAIDKTVAWIDENQTATKEEYEAEQKQLESVANPVMMKIY---GAEGGA 616          
BLAST of CB304394 vs. ExPASy Swiss-Prot
Match: HSP70_SCHMA (Heat shock 70 kDa protein homolog OS=Schistosoma mansoni PE=2 SV=2)

HSP 1 Score: 108.612 bits (270), Expect = 2.306e-23
Identity = 51/107 (47.66%), Postives = 74/107 (69.16%), Query Frame = -3
Query:  264 EEIEKMVQEAEKYKAEDDEHKKKVEAKNALENYAYNMRNTIKDEKISAKLPTADKKKIEDAIEEAIQWLDGNQLAEADEFEDKMKELECICNPIIAKMYQGGGADAG 584
            EEIE+MV +A+KYKAED++ + +V AKN+LE+Y Y M+  ++ E +  K+P +D++ I    E+ I WLD +Q AE  E+E K +ELE +C PII K+YQ GG   G
Sbjct:  511 EEIERMVADADKYKAEDEKQRDRVSAKNSLESYVYTMKQQVEGE-LKEKIPESDRQVIISKCEDTISWLDVHQSAEKHEYESKREELEKVCAPIITKVYQAGGMPGG 616          
BLAST of CB304394 vs. ExPASy Swiss-Prot
Match: HSP7C_CAEEL (Heat shock 70 kDa protein C OS=Caenorhabditis elegans GN=hsp-3 PE=2 SV=2)

HSP 1 Score: 108.227 bits (269), Expect = 3.012e-23
Identity = 52/113 (46.02%), Postives = 78/113 (69.03%), Query Frame = -3
Query:  249 EEIEKMVQEAEKYKAEDDEHKKKVEAKNALENYAYNMRNTIKD-EKISAKLPTADKKKIEDAIEEAIQWLDGNQLAEADEFEDKMKELECICNPIIAKMYQGGGADAGASMDE 584
            E+IE+M+ +AEK+  +D + K K EA+N LE+YAYN++N I+D EK+  KL   DKK IE+A+EEAI WL  N  A A+E +++ K+LE    PI++K+Y+  GA    + +E
Sbjct:  541 EDIERMINDAEKFAEDDKKVKDKAEARNELESYAYNLKNQIEDKEKLGGKLDEDDKKTIEEAVEEAISWLGSNAEASAEELKEQKKDLESKVQPIVSKLYKDAGAGGEEAPEE 653          
BLAST of CB304394 vs. ExPASy Swiss-Prot
Match: HSP74_PARLI (Heat shock 70 kDa protein IV OS=Paracentrotus lividus GN=HSP70IV PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 3.012e-23
Identity = 44/107 (41.12%), Postives = 75/107 (70.09%), Query Frame = -3
Query:  264 EEIEKMVQEAEKYKAEDDEHKKKVEAKNALENYAYNMRNTIKDEKISAKLPTADKKKIEDAIEEAIQWLDGNQLAEADEFEDKMKELECICNPIIAKMYQGGGADAG 584
            ++I++M+ +AE++KAEDD  ++++ AKN LE YA+N+++ + D    +KL   DK+ +  A+ + +QWLD N LA+ +EF  K++EL+  C+PI+AKM+ G G   G
Sbjct:  513 DDIDRMINDAERFKAEDDAQRERINAKNQLEGYAFNLKSAVDDAAAQSKLSPGDKETVTKAVNDVLQWLDSNSLADKEEFTYKLEELQKTCSPIMAKMHAGTGGPRG 619          
BLAST of CB304394 vs. ExPASy Swiss-Prot
Match: HSP76_PIG (Heat shock 70 kDa protein 6 OS=Sus scrofa GN=HSPA6 PE=2 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 3.933e-23
Identity = 45/109 (41.28%), Postives = 77/109 (70.64%), Query Frame = -3
Query:  258 EEIEKMVQEAEKYKAEDDEHKKKVEAKNALENYAYNMRNTIKDEKISAKLPTADKKKIEDAIEEAIQWLDGNQLAEADEFEDKMKELECICNPIIAKMYQGGGADAGAS 584
            EE+E+MV+EA++YK ED+  + +V AKN+LE Y ++++ ++ +E +  K+P  D+ K++D  +E + WL+ NQLAE +E+E + +ELE IC PI +++Y   G   G+S
Sbjct:  515 EEVERMVREADEYKVEDEAQRDRVAAKNSLEAYVFHVKGSLHEESLRDKIPEEDRCKVQDKCQEVLTWLEHNQLAEKEEYEHQKRELEQICRPIFSRLYGAPGIPGGSS 623          
BLAST of CB304394 vs. ExPASy Swiss-Prot
Match: HSP7C_CAEBR (Heat shock 70 kDa protein C OS=Caenorhabditis briggsae GN=hsp-3 PE=3 SV=2)

HSP 1 Score: 107.071 bits (266), Expect = 6.709e-23
Identity = 52/113 (46.02%), Postives = 79/113 (69.91%), Query Frame = -3
Query:  249 EEIEKMVQEAEKYKAEDDEHKKKVEAKNALENYAYNMRNTIKD-EKISAKLPTADKKKIEDAIEEAIQWLDGNQLAEADEFEDKMKELECICNPIIAKMYQGGGADAGASMDE 584
            E+IE+M+ +AEK+  +D + K+K EA+N LE+YAY+++N I D EK+  KL   DKK IE+A++EAI WL  N  A A+E +++ KELE    PI++K+Y+ GGA    + +E
Sbjct:  541 EDIERMINDAEKFAEDDKKVKEKAEARNELESYAYSLKNQIGDKEKLGGKLDEDDKKTIEEAVDEAISWLGSNADASAEELKEQKKELEGKVQPIVSKLYKDGGAGGEEAPEE 653          
BLAST of CB304394 vs. ExPASy Swiss-Prot
Match: HSP70_SCHJA (Heat shock 70 kDa protein (Fragment) OS=Schistosoma japonicum PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 6.709e-23
Identity = 47/104 (45.19%), Postives = 77/104 (74.04%), Query Frame = -3
Query:  276 EEIEKMVQEAEKYKAEDDEHKKKVEAKNALENYAYNMRNTIKDEKISAKLPTADKK-KIEDAIEEAIQWLDGNQLAEADEFEDKMKELECICNPIIAKMYQGGG 584
            EEI++M+ EA++YK+ED++ K ++ AKN+LE+Y Y+M+ +++ +++  K+  +D+K +I    EE I+W+D NQLAE +EFE+K  ELE +C PII  M + GG
Sbjct:   68 EEIDRMINEADRYKSEDEKQKNRICAKNSLESYVYSMKQSVEGDEMKDKISESDRKNRILSKCEETIRWMDNNQLAEKEEFEEKKSELEKVCMPIITAMNRAGG 171          
BLAST of CB304394 vs. ExPASy Swiss-Prot
Match: GRP78_XENLA (78 kDa glucose-regulated protein OS=Xenopus laevis GN=hspa5 PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 6.709e-23
Identity = 51/105 (48.57%), Postives = 77/105 (73.33%), Query Frame = -3
Query:  273 EEIEKMVQEAEKYKAEDDEHKKKVEAKNALENYAYNMRNTIKD-EKISAKLPTADKKKIEDAIEEAIQWLDGNQLAEADEFEDKMKELECICNPIIAKMYQGGGA 584
            EEIE+MV +AEK+  ED + K++++ +N LE+YAY+++N I D EK+  KL + DK+ IE A+EE I+WL+ +Q A+ ++F+ K KELE I  PI+ K+Y G GA
Sbjct:  537 EEIERMVTDAEKFAEEDKKLKERIDTRNELESYAYSLKNQIGDKEKLGGKLSSEDKETIEKAVEEKIEWLESHQDADIEDFKAKKKELEEIVQPIVGKLYGGAGA 641          
BLAST of CB304394 vs. ExPASy Swiss-Prot
Match: HSP7C_DROME (Heat shock 70 kDa protein cognate 3 OS=Drosophila melanogaster GN=Hsc70-3 PE=2 SV=2)

HSP 1 Score: 106.301 bits (264), Expect = 1.144e-22
Identity = 48/104 (46.15%), Postives = 80/104 (76.92%), Query Frame = -3
Query:  276 EEIEKMVQEAEKYKAEDDEHKKKVEAKNALENYAYNMRNTIKD-EKISAKLPTADKKKIEDAIEEAIQWLDGNQLAEADEFEDKMKELECICNPIIAKMYQGGG 584
            E+I++M+++AEK+  ED + K++VE++N LE+YAY+++N I D +K+ AKL   +K K+E AI+E+I+WL+ N  A+ +E++ + K+LE I  P+IAK+YQG G
Sbjct:  536 EDIDRMIRDAEKFADEDKKLKERVESRNELESYAYSLKNQIGDKDKLGAKLSDDEKNKLESAIDESIKWLEQNPDADPEEYKKQKKDLEAIVQPVIAKLYQGAG 639          
BLAST of CB304394 vs. ExPASy Swiss-Prot
Match: GRP78_CHICK (78 kDa glucose-regulated protein OS=Gallus gallus GN=HSPA5 PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.495e-22
Identity = 49/104 (47.12%), Postives = 77/104 (74.04%), Query Frame = -3
Query:  276 EEIEKMVQEAEKYKAEDDEHKKKVEAKNALENYAYNMRNTIKD-EKISAKLPTADKKKIEDAIEEAIQWLDGNQLAEADEFEDKMKELECICNPIIAKMYQGGG 584
            EEIE+MV +AEK+  ED + K++++A+N LE+YAY+++N I D EK+  KL + DK+ IE A+EE I+WL+ +Q A+ ++F+ K KELE +  PI++K+Y   G
Sbjct:  534 EEIERMVNDAEKFAEEDKKLKERIDARNELESYAYSLKNQIGDKEKLGGKLSSEDKETIEKAVEEKIEWLESHQDADIEDFKSKKKELEEVVQPIVSKLYGSAG 637          
The following BLAST results are available for this feature:
BLAST of CB304394 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 166
Match NameE-valueIdentityDescription
HSP70_CLAHE1.352e-2344.44Heat shock 70 kDa protein OS=Cladosporium herbarum... [more]
HSP70_SCHMA2.306e-2347.66Heat shock 70 kDa protein homolog OS=Schistosoma m... [more]
HSP7C_CAEEL3.012e-2346.02Heat shock 70 kDa protein C OS=Caenorhabditis eleg... [more]
HSP74_PARLI3.012e-2341.12Heat shock 70 kDa protein IV OS=Paracentrotus livi... [more]
HSP76_PIG3.933e-2341.28Heat shock 70 kDa protein 6 OS=Sus scrofa GN=HSPA6... [more]
HSP7C_CAEBR6.709e-2346.02Heat shock 70 kDa protein C OS=Caenorhabditis brig... [more]
HSP70_SCHJA6.709e-2345.19Heat shock 70 kDa protein (Fragment) OS=Schistosom... [more]
GRP78_XENLA6.709e-2348.5778 kDa glucose-regulated protein OS=Xenopus laevis... [more]
HSP7C_DROME1.144e-2246.15Heat shock 70 kDa protein cognate 3 OS=Drosophila ... [more]
GRP78_CHICK1.495e-2247.1278 kDa glucose-regulated protein OS=Gallus gallus ... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0001_IIIaR_B11 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0001_IIIaR_B11 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304394 ID=CB304394; Name=CB304394; organism=Citrus sinensis; type=EST; length=586bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCCTGAAGGAAAAATAAGACA
TTGCTTAAAAACATAATATCTTTATGCATACACCAGGAAACAGTATTTAC
ATGTAACAGAAGCAGGAAAAGGAAGAAAAGATCACACCCCCAACTCAACC
CCTAATCATTAAACAACATTAAGCATAAATCCTCAAATTTAATCCACCTC
CTCAATCTTGGGGCCAGCACCGCTACCAGCACCAGCAGAAGGACCATCCT
CATCCATACTTGCACCAGCATCAGCTCCACCTCCTTGGTACATCTTGGCA
ATAATTGGGTTGCAGATGCACTCCAGCTCTTTCATCTTATCTTCAAACTC
ATCTGCCTCTGCGAGCTGGTTCCCGTCAAGCCATTGGATGGCCTCCTCAA
TGGCATCTTCAATTTTCTTCTTGTCAGCAGTGGGAAGCTTTGCGCTGATC
TTTTCATCCTTGATTGTGTTTCTCATGTTGTAAGCATAATTCTCAAGAGC
ATTCTTGGCCTCCACCTTTTTCTTGTGCTCGTCATCCTCGGCCTTGTATT
TTTCTGCCTCTTGTACCATCTTCTCTATCTCCTCCT
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