CB304394

Overview
NameCB304394
Unique NameCB304394
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length586
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13846 contig Csv1_Contig13846:1..560. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304394 vs. ExPASy Swiss-Prot
Match: HSP7D_CAEEL (Heat shock 70 kDa protein D OS=Caenorhabditis elegans GN=hsp-4 PE=1 SV=2)

HSP 1 Score: 105.531 bits (262), Expect = 1.952e-22
Identity = 51/110 (46.36%), Postives = 73/110 (66.36%), Query Frame = -3
Query:  258 EEIEKMVQEAEKYKAEDDEHKKKVEAKNALENYAYNMRNTIKD-EKISAKLPTADKKKIEDAIEEAIQWLDGNQLAEADEFEDKMKELECICNPIIAKMYQGGGADAGAS 584
            E+IE+M+ +A+K+ A+D   K+KVE++N LE YAY M+  I D EK+  KL   DK  IE A+E AI+WL  NQ A  +E +++ KELE +  PI++K+Y  GG    AS
Sbjct:  538 EDIERMINDADKFAADDQAQKEKVESRNELEAYAYQMKTQIADKEKLGGKLTDEDKVSIESAVERAIEWLGSNQDASTEENKEQKKELESVVQPIVSKLYSAGGQGEQAS 647          
BLAST of CB304394 vs. ExPASy Swiss-Prot
Match: GRP78_MOUSE (78 kDa glucose-regulated protein OS=Mus musculus GN=Hspa5 PE=1 SV=3)

HSP 1 Score: 105.531 bits (262), Expect = 1.952e-22
Identity = 50/104 (48.08%), Postives = 77/104 (74.04%), Query Frame = -3
Query:  276 EEIEKMVQEAEKYKAEDDEHKKKVEAKNALENYAYNMRNTIKD-EKISAKLPTADKKKIEDAIEEAIQWLDGNQLAEADEFEDKMKELECICNPIIAKMYQGGG 584
            EEIE+MV +AEK+  ED + K++++ +N LE+YAY+++N I D EK+  KL + DK+ +E A+EE I+WL+ +Q A+ ++F+ K KELE I  PII+K+Y  GG
Sbjct:  537 EEIERMVNDAEKFAEEDKKLKERIDTRNELESYAYSLKNQIGDKEKLGGKLSSEDKETMEKAVEEKIEWLESHQDADIEDFKAKKKELEEIVQPIISKLYGSGG 640          
BLAST of CB304394 vs. ExPASy Swiss-Prot
Match: GRP78_RAT (78 kDa glucose-regulated protein OS=Rattus norvegicus GN=Hspa5 PE=1 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 3.330e-22
Identity = 50/104 (48.08%), Postives = 76/104 (73.08%), Query Frame = -3
Query:  276 EEIEKMVQEAEKYKAEDDEHKKKVEAKNALENYAYNMRNTIKD-EKISAKLPTADKKKIEDAIEEAIQWLDGNQLAEADEFEDKMKELECICNPIIAKMYQGGG 584
            EEIE+MV +AEK+  ED + K++++ +N LE+YAY+++N I D EK+  KL   DK+ +E A+EE I+WL+ +Q A+ ++F+ K KELE I  PII+K+Y  GG
Sbjct:  536 EEIERMVNDAEKFAEEDKKLKERIDTRNELESYAYSLKNQIGDKEKLGGKLSPEDKETMEKAVEEKIEWLESHQDADIEDFKAKKKELEEIVQPIISKLYGSGG 639          
BLAST of CB304394 vs. ExPASy Swiss-Prot
Match: HSP72_PICAN (Heat shock protein 70 2 OS=Pichia angusta GN=HSA2 PE=3 SV=2)

HSP 1 Score: 103.605 bits (257), Expect = 7.418e-22
Identity = 47/108 (43.52%), Postives = 71/108 (65.74%), Query Frame = -3
Query:  261 EEIEKMVQEAEKYKAEDDEHKKKVEAKNALENYAYNMRNTIKDEKISAKLPTADKKKIEDAIEEAIQWLDGNQLAEADEFEDKMKELECICNPIIAKMYQGGGADAGA 584
            EEIE+MV EAEKYK ED++  K++ AKN LE+YAY+++ T  +++   K+  + ++    A ++ I WLD NQ A A+E++DK KELE   N ++  +Y  GG   GA
Sbjct:  511 EEIERMVSEAEKYKEEDEKEAKRIAAKNGLESYAYSLKQTTSEKQFEEKVEASKREAFTKACDDTIAWLDENQTATAEEYDDKRKELEQAGNEVLKDLYAEGGVPGGA 618          
BLAST of CB304394 vs. ExPASy Swiss-Prot
Match: HSP75_DROME (Major heat shock 70 kDa protein Bc OS=Drosophila melanogaster GN=Hsp70Bc PE=2 SV=2)

HSP 1 Score: 103.219 bits (256), Expect = 9.688e-22
Identity = 47/106 (44.34%), Postives = 74/106 (69.81%), Query Frame = -3
Query:  264 EIEKMVQEAEKYKAEDDEHKKKVEAKNALENYAYNMRNTIKDEKISAKLPTADKKKIEDAIEEAIQWLDGNQLAEADEFEDKMKELECICNPIIAKMYQGGGADAG 581
            EI++MV EAEKY  ED++H++++ ++NALE+Y +N++ ++ ++  + KL  ADK  + D   E I+WLD N  AE +EF+ KM+EL   C+PI+ KM+Q G   AG
Sbjct:  512 EIDRMVNEAEKYADEDEKHRQRITSRNALESYVFNVKQSV-EQAPAGKLDEADKNSVLDKCNETIRWLDSNTTAEKEEFDHKMEELTRHCSPIMTKMHQQGAGAAG 616          
BLAST of CB304394 vs. ExPASy Swiss-Prot
Match: HSP74_DROME (Major heat shock 70 kDa protein Bbb OS=Drosophila melanogaster GN=Hsp70Bbb PE=2 SV=2)

HSP 1 Score: 103.219 bits (256), Expect = 9.688e-22
Identity = 47/106 (44.34%), Postives = 74/106 (69.81%), Query Frame = -3
Query:  264 EIEKMVQEAEKYKAEDDEHKKKVEAKNALENYAYNMRNTIKDEKISAKLPTADKKKIEDAIEEAIQWLDGNQLAEADEFEDKMKELECICNPIIAKMYQGGGADAG 581
            EI++MV EAEKY  ED++H++++ ++NALE+Y +N++ ++ ++  + KL  ADK  + D   E I+WLD N  AE +EF+ KM+EL   C+PI+ KM+Q G   AG
Sbjct:  512 EIDRMVNEAEKYADEDEKHRQRITSRNALESYVFNVKQSV-EQAPAGKLDEADKNSVLDKCNETIRWLDSNTTAEKEEFDHKMEELTRHCSPIMTKMHQQGAGAAG 616          
BLAST of CB304394 vs. ExPASy Swiss-Prot
Match: HSP73_DROME (Major heat shock 70 kDa protein Bb OS=Drosophila melanogaster GN=Hsp70Bb PE=2 SV=2)

HSP 1 Score: 103.219 bits (256), Expect = 9.688e-22
Identity = 47/106 (44.34%), Postives = 74/106 (69.81%), Query Frame = -3
Query:  264 EIEKMVQEAEKYKAEDDEHKKKVEAKNALENYAYNMRNTIKDEKISAKLPTADKKKIEDAIEEAIQWLDGNQLAEADEFEDKMKELECICNPIIAKMYQGGGADAG 581
            EI++MV EAEKY  ED++H++++ ++NALE+Y +N++ ++ ++  + KL  ADK  + D   E I+WLD N  AE +EF+ KM+EL   C+PI+ KM+Q G   AG
Sbjct:  512 EIDRMVNEAEKYADEDEKHRQRITSRNALESYVFNVKQSV-EQAPAGKLDEADKNSVLDKCNETIRWLDSNTTAEKEEFDHKMEELTRHCSPIMTKMHQQGAGAAG 616          
BLAST of CB304394 vs. ExPASy Swiss-Prot
Match: HSP72_USTMA (Heat shock 70 kDa protein 2 OS=Ustilago maydis GN=UMS2 PE=3 SV=2)

HSP 1 Score: 103.219 bits (256), Expect = 9.688e-22
Identity = 46/107 (42.99%), Postives = 71/107 (66.36%), Query Frame = -3
Query:  264 EEIEKMVQEAEKYKAEDDEHKKKVEAKNALENYAYNMRNTIKDEKISAKLPTADKKKIEDAIEEAIQWLDGNQLAEADEFEDKMKELECICNPIIAKMYQGGGADAG 584
            E+IE+M+++AE++  ED +  ++ +AKN LE+Y YN+RNT  + ++  KL  ADK+ +E  ++E I+WLD N  A  DE +DK KE+E   NPI+ K+Y   G   G
Sbjct:  511 EQIEEMLKQAEQFAEEDKQALERTQAKNGLESYIYNVRNTTNEPQLKDKLEAADKEALEKIVKEGIEWLDSNTTASTDELKDKQKEIEEQVNPIMTKIYSAAGGAPG 617          
BLAST of CB304394 vs. ExPASy Swiss-Prot
Match: HSP72_DROME (Major heat shock 70 kDa protein Ba OS=Drosophila melanogaster GN=Hsp70Ba PE=2 SV=2)

HSP 1 Score: 103.219 bits (256), Expect = 9.688e-22
Identity = 47/106 (44.34%), Postives = 74/106 (69.81%), Query Frame = -3
Query:  264 EIEKMVQEAEKYKAEDDEHKKKVEAKNALENYAYNMRNTIKDEKISAKLPTADKKKIEDAIEEAIQWLDGNQLAEADEFEDKMKELECICNPIIAKMYQGGGADAG 581
            EI++MV EAEKY  ED++H++++ ++NALE+Y +N++ ++ ++  + KL  ADK  + D   E I+WLD N  AE +EF+ KM+EL   C+PI+ KM+Q G   AG
Sbjct:  512 EIDRMVNEAEKYADEDEKHRQRITSRNALESYVFNVKQSV-EQAPAGKLDEADKNSVLDKCNETIRWLDSNTTAEKEEFDHKMEELTRHCSPIMTKMHQQGAGAAG 616          
BLAST of CB304394 vs. ExPASy Swiss-Prot
Match: GRP78_PONAB (78 kDa glucose-regulated protein OS=Pongo abelii GN=HSPA5 PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 9.688e-22
Identity = 49/104 (47.12%), Postives = 76/104 (73.08%), Query Frame = -3
Query:  276 EEIEKMVQEAEKYKAEDDEHKKKVEAKNALENYAYNMRNTIKD-EKISAKLPTADKKKIEDAIEEAIQWLDGNQLAEADEFEDKMKELECICNPIIAKMYQGGG 584
            EEIE+MV +AEK+  ED + K++++ +N LE+YAY+++N I D EK+  KL + DK+ +E A+EE I+WL+ +Q A+ ++F+ K KELE I  PII+K+Y   G
Sbjct:  536 EEIERMVNDAEKFAEEDKKLKERIDTRNELESYAYSLKNQIGDKEKLGGKLSSEDKETMEKAVEEKIEWLESHQDADIEDFKAKKKELEEIVQPIISKLYGSAG 639          
The following BLAST results are available for this feature:
BLAST of CB304394 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 166
Match NameE-valueIdentityDescription
HSP7D_CAEEL1.952e-2246.36Heat shock 70 kDa protein D OS=Caenorhabditis eleg... [more]
GRP78_MOUSE1.952e-2248.0878 kDa glucose-regulated protein OS=Mus musculus G... [more]
GRP78_RAT3.330e-2248.0878 kDa glucose-regulated protein OS=Rattus norvegi... [more]
HSP72_PICAN7.418e-2243.52Heat shock protein 70 2 OS=Pichia angusta GN=HSA2 ... [more]
HSP75_DROME9.688e-2244.34Major heat shock 70 kDa protein Bc OS=Drosophila m... [more]
HSP74_DROME9.688e-2244.34Major heat shock 70 kDa protein Bbb OS=Drosophila ... [more]
HSP73_DROME9.688e-2244.34Major heat shock 70 kDa protein Bb OS=Drosophila m... [more]
HSP72_USTMA9.688e-2242.99Heat shock 70 kDa protein 2 OS=Ustilago maydis GN=... [more]
HSP72_DROME9.688e-2244.34Major heat shock 70 kDa protein Ba OS=Drosophila m... [more]
GRP78_PONAB9.688e-2247.1278 kDa glucose-regulated protein OS=Pongo abelii G... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0001_IIIaR_B11 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0001_IIIaR_B11 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304394 ID=CB304394; Name=CB304394; organism=Citrus sinensis; type=EST; length=586bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCCTGAAGGAAAAATAAGACA
TTGCTTAAAAACATAATATCTTTATGCATACACCAGGAAACAGTATTTAC
ATGTAACAGAAGCAGGAAAAGGAAGAAAAGATCACACCCCCAACTCAACC
CCTAATCATTAAACAACATTAAGCATAAATCCTCAAATTTAATCCACCTC
CTCAATCTTGGGGCCAGCACCGCTACCAGCACCAGCAGAAGGACCATCCT
CATCCATACTTGCACCAGCATCAGCTCCACCTCCTTGGTACATCTTGGCA
ATAATTGGGTTGCAGATGCACTCCAGCTCTTTCATCTTATCTTCAAACTC
ATCTGCCTCTGCGAGCTGGTTCCCGTCAAGCCATTGGATGGCCTCCTCAA
TGGCATCTTCAATTTTCTTCTTGTCAGCAGTGGGAAGCTTTGCGCTGATC
TTTTCATCCTTGATTGTGTTTCTCATGTTGTAAGCATAATTCTCAAGAGC
ATTCTTGGCCTCCACCTTTTTCTTGTGCTCGTCATCCTCGGCCTTGTATT
TTTCTGCCTCTTGTACCATCTTCTCTATCTCCTCCT
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