CB304394

Overview
NameCB304394
Unique NameCB304394
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length586
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13846 contig Csv1_Contig13846:1..560. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304394 vs. ExPASy Swiss-Prot
Match: BIP2_DICDI (Luminal-binding protein 2 OS=Dictyostelium discoideum GN=bip2 PE=1 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 1.827e-20
Identity = 53/112 (47.32%), Postives = 74/112 (66.07%), Query Frame = -3
Query:  252 EIEKMVQEAEKYKAEDDEHKKKVEAKNALENYAYNMRNTIKD-EKISAKLPTADKKKIEDAIEEAIQWLDGNQLAEADEFEDKMKELECICNPIIAKMY-QGGGADAGASMD 581
            +I++MV+EA     ED   K++VEAKN LENY Y ++NTI D +KI  K+ + DK+ IE AI +A+ WLD N  AE +EF+++ K LE I  PI +K+Y   GG+  GA  D
Sbjct:  540 DIDRMVKEAADAADEDKAAKERVEAKNTLENYIYQIKNTIGDKDKIGGKIESDDKETIETAISDALSWLDVNSSAEKEEFDEQYKILEKIVQPIFSKLYGAAGGSPNGAGED 651          
BLAST of CB304394 vs. ExPASy Swiss-Prot
Match: HSP72_ANOAL (Heat shock protein 70 A2 OS=Anopheles albimanus GN=HSP70A2 PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 2.386e-20
Identity = 40/99 (40.40%), Postives = 74/99 (74.75%), Query Frame = -3
Query:  285 EIEKMVQEAEKYKAEDDEHKKKVEAKNALENYAYNMRNTIKDEKISAKLPTADKKKIEDAIEEAIQWLDGNQLAEADEFEDKMKELECICNPIIAKMYQ 581
            +I++MV EAEKY+ ED++ ++ + A+N LE Y +N++ ++  E  S+KL  AD++ ++D  +E ++W+DGN +AE +E+E +M+EL  +C+PI+ K++Q
Sbjct:  513 DIDRMVSEAEKYREEDEKQREAIAARNQLEAYCFNLKQSLDGEG-SSKLSDADRRTVQDRCDETLRWIDGNTMAEKEEYEHQMQELSRVCSPIMTKLHQ 610          
BLAST of CB304394 vs. ExPASy Swiss-Prot
Match: HSP71_ANOAL (Heat shock protein 70 A1 OS=Anopheles albimanus GN=HSP70A1 PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 2.386e-20
Identity = 40/99 (40.40%), Postives = 74/99 (74.75%), Query Frame = -3
Query:  285 EIEKMVQEAEKYKAEDDEHKKKVEAKNALENYAYNMRNTIKDEKISAKLPTADKKKIEDAIEEAIQWLDGNQLAEADEFEDKMKELECICNPIIAKMYQ 581
            +I++MV EAEKY+ ED++ ++ + A+N LE Y +N++ ++  E  S+KL  AD++ ++D  +E ++W+DGN +AE +E+E +M+EL  +C+PI+ K++Q
Sbjct:  513 DIDRMVSEAEKYREEDEKQREAIAARNQLEAYCFNLKQSLDGEG-SSKLSEADRRTVQDRCDETLRWIDGNTMAEKEEYEHQMQELSRVCSPIMTKLHQ 610          
BLAST of CB304394 vs. ExPASy Swiss-Prot
Match: GRP78_ECHMU (78 kDa glucose-regulated protein OS=Echinococcus multilocularis GN=GRP78 PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 2.386e-20
Identity = 45/114 (39.47%), Postives = 77/114 (67.54%), Query Frame = -3
Query:  246 EEIEKMVQEAEKYKAEDDEHKKKVEAKNALENYAYNMRNTIKD-EKISAKLPTADKKKIEDAIEEAIQWLDGNQLAEADEFEDKMKELECICNPIIAKMYQGGGADAGASMDED 584
            EEIE+M+Q+AEK+  +D + K++VE +N LE+ AY+++N +KD EK+  KL   + K IEDA +EAI+W++ N  AE  +++ +   LE +  PI++K+Y+G      ++  E+
Sbjct:  535 EEIERMIQDAEKFSDQDKQVKERVEVRNDLESLAYSIKNQVKDKEKMGGKLSDDEIKTIEDAADEAIKWMENNPQAETSDYKKQKANLESVVQPIVSKLYEGAAPPTESTPKEE 648          
BLAST of CB304394 vs. ExPASy Swiss-Prot
Match: HSP72_DROSI (Major heat shock 70 kDa protein Ba OS=Drosophila simulans GN=Hsp70Ba PE=2 SV=2)

HSP 1 Score: 98.2117 bits (243), Expect = 3.116e-20
Identity = 47/108 (43.52%), Postives = 76/108 (70.37%), Query Frame = -3
Query:  258 EIEKMVQEAEKYKAEDDEHKKKVEAKNALENYAYNMRNTIKDEKISAKLPTADKKKIEDAIEEAIQWLDGNQLAEADEFEDKMKELECICNPIIAKMYQGGGADAGAS 581
            EI++MV EAEKY  ED++ ++++ ++NALE+Y +N++ ++ ++  + KL  ADK  + D   + I+WLD N  AE +EF+ KM+EL   C+PI+ KM+Q  GA AGA+
Sbjct:  512 EIDRMVNEAEKYADEDEKQRQRITSRNALESYVFNVKQSV-EQAPAGKLDEADKNSVLDKCNDTIRWLDSNTTAEKEEFDHKMEELTRHCSPIMTKMHQ-QGAGAGAA 617          
BLAST of CB304394 vs. ExPASy Swiss-Prot
Match: GRP78_ECHGR (78 kDa glucose-regulated protein OS=Echinococcus granulosus GN=GRP78 PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 4.070e-20
Identity = 44/102 (43.14%), Postives = 73/102 (71.57%), Query Frame = -3
Query:  282 EEIEKMVQEAEKYKAEDDEHKKKVEAKNALENYAYNMRNTIKD-EKISAKLPTADKKKIEDAIEEAIQWLDGNQLAEADEFEDKMKELECICNPIIAKMYQG 584
            EEIE+M+Q+AEK+  +D + K++VE +N LE+ AY+++N +KD EK+  KL   + K IEDA +EAI+W++ N  AE  +++ +   LE +  PI++K+Y+G
Sbjct:  535 EEIERMIQDAEKFSDQDKQVKERVEVRNDLESLAYSIKNQVKDKEKMGGKLSDDEIKTIEDAADEAIKWMENNPQAETSDYKKQKANLESVVQPIVSKLYEG 636          
BLAST of CB304394 vs. ExPASy Swiss-Prot
Match: HSP73_PLAFA (Heat shock 70 kDa protein PPF203 (Fragment) OS=Plasmodium falciparum PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 9.067e-20
Identity = 38/88 (43.18%), Postives = 64/88 (72.73%), Query Frame = -3
Query:  321 EEIEKMVQEAEKYKAEDDEHKKKVEAKNALENYAYNMRNTIKDEKISAKLPTADKKKIEDAIEEAIQWLDGNQLAEADEFEDKMKELE 584
            ++I++MV +AEKYK ED+++K ++EA+N LENY YN++NT++DE +  K+P  D +K    ++  + WL+ NQ AE +E+ +K K+ E
Sbjct:  113 DDIDRMVNDAEKYKEEDEQNKNRIEARNNLENYCYNVKNTLQDENLKTKIPKDDSEKCMKTVKSVLDWLEKNQTAETEEYNEKEKDTE 200          
BLAST of CB304394 vs. ExPASy Swiss-Prot
Match: HSP68_DROME (Heat shock protein 68 OS=Drosophila melanogaster GN=Hsp68 PE=1 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.184e-19
Identity = 45/104 (43.27%), Postives = 72/104 (69.23%), Query Frame = -3
Query:  276 EIEKMVQEAEKYKAEDDEHKKKVEAKNALENYAYNMRNTIKD--EKISAKLPTADKKKIEDAIEEAIQWLDGNQLAEADEFEDKMKELECICNPIIAKMYQGGG 581
            +I++M+ EAEKY  ED+ H++++ A+N LE Y + ++   ++  ++ISA    ADK  I +   EA++WLD N  AE +E+E K+KELE  C+PI+ KM++GGG
Sbjct:  512 DIDRMLSEAEKYAEEDERHRQRIAARNQLETYLFGVKEAAENGGDRISA----ADKSSIVERCSEAMKWLDSNTTAEKEEYEYKLKELEQFCSPIMTKMHKGGG 611          
BLAST of CB304394 vs. ExPASy Swiss-Prot
Match: GRP78_DEBHA (78 kDa glucose-regulated protein homolog OS=Debaryomyces hansenii GN=KAR2 PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.020e-19
Identity = 48/119 (40.34%), Postives = 83/119 (69.75%), Query Frame = -3
Query:  246 EEIEKMVQEAEKYKAEDDEHKKKVEAKNALENYAYNMRNTIKDEK---ISAKLPTADKKKIEDAIEEAIQWLDGN-QLAEADEFEDKMKELECICNPIIAKMYQG--GGADAGASMDED 584
            E+I++MV+EAEKY  +D E K K+E++N+LENYA+ ++  +KDE    + +KL   DK+ ++DAI+E +++++ N   A ++EFE++ ++L  + +PI +K+Y G  GGAD     D+D
Sbjct:  555 EDIDRMVEEAEKYAEQDSELKAKIESRNSLENYAHMLKGQVKDESENGLGSKLNDDDKETLDDAIKETLEFIEDNYDSATSEEFEEQKQKLIDVASPITSKLYGGGAGGADEAQFGDDD 673          
BLAST of CB304394 vs. ExPASy Swiss-Prot
Match: GRP78_YARLI (78 kDa glucose-regulated protein homolog OS=Yarrowia lipolytica GN=KAR2 PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 2.638e-19
Identity = 47/120 (39.17%), Postives = 78/120 (65.00%), Query Frame = -3
Query:  246 EEIEKMVQEAEKYKAEDDEHKKKVEAKNALENYAYNMRNTIKDEK-ISAKLPTADKKKIEDAIEEAIQWLDGNQL-AEADEFEDKMKELECICNPIIAKMYQGG-----GADAGASMDED 584
            +EIE+MV+EAE++  ED   ++ +EAKN+LENYA+++RN + D+  +  K+   DK+ + DA+ E ++WL+ N + A  ++FE+K + L  I  PI +K+Y+GG       D G   D+D
Sbjct:  543 DEIERMVEEAERFAEEDALIRETIEAKNSLENYAHSLRNQVADKSGLGGKISADDKEALNDAVTETLEWLEANSVSATKEDFEEKKEALSAIAYPITSKIYEGGEGGDESNDGGFYADDD 662          
The following BLAST results are available for this feature:
BLAST of CB304394 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 166
Match NameE-valueIdentityDescription
BIP2_DICDI1.827e-2047.32Luminal-binding protein 2 OS=Dictyostelium discoid... [more]
HSP72_ANOAL2.386e-2040.40Heat shock protein 70 A2 OS=Anopheles albimanus GN... [more]
HSP71_ANOAL2.386e-2040.40Heat shock protein 70 A1 OS=Anopheles albimanus GN... [more]
GRP78_ECHMU2.386e-2039.4778 kDa glucose-regulated protein OS=Echinococcus m... [more]
HSP72_DROSI3.116e-2043.52Major heat shock 70 kDa protein Ba OS=Drosophila s... [more]
GRP78_ECHGR4.070e-2043.1478 kDa glucose-regulated protein OS=Echinococcus g... [more]
HSP73_PLAFA9.067e-2043.18Heat shock 70 kDa protein PPF203 (Fragment) OS=Pla... [more]
HSP68_DROME1.184e-1943.27Heat shock protein 68 OS=Drosophila melanogaster G... [more]
GRP78_DEBHA2.020e-1940.3478 kDa glucose-regulated protein homolog OS=Debary... [more]
GRP78_YARLI2.638e-1939.1778 kDa glucose-regulated protein homolog OS=Yarrow... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0001_IIIaR_B11 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0001_IIIaR_B11 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304394 ID=CB304394; Name=CB304394; organism=Citrus sinensis; type=EST; length=586bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCCTGAAGGAAAAATAAGACA
TTGCTTAAAAACATAATATCTTTATGCATACACCAGGAAACAGTATTTAC
ATGTAACAGAAGCAGGAAAAGGAAGAAAAGATCACACCCCCAACTCAACC
CCTAATCATTAAACAACATTAAGCATAAATCCTCAAATTTAATCCACCTC
CTCAATCTTGGGGCCAGCACCGCTACCAGCACCAGCAGAAGGACCATCCT
CATCCATACTTGCACCAGCATCAGCTCCACCTCCTTGGTACATCTTGGCA
ATAATTGGGTTGCAGATGCACTCCAGCTCTTTCATCTTATCTTCAAACTC
ATCTGCCTCTGCGAGCTGGTTCCCGTCAAGCCATTGGATGGCCTCCTCAA
TGGCATCTTCAATTTTCTTCTTGTCAGCAGTGGGAAGCTTTGCGCTGATC
TTTTCATCCTTGATTGTGTTTCTCATGTTGTAAGCATAATTCTCAAGAGC
ATTCTTGGCCTCCACCTTTTTCTTGTGCTCGTCATCCTCGGCCTTGTATT
TTTCTGCCTCTTGTACCATCTTCTCTATCTCCTCCT
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