CB304394

Overview
NameCB304394
Unique NameCB304394
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length586
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13846 contig Csv1_Contig13846:1..560. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304394 vs. ExPASy Swiss-Prot
Match: GRP78_NEUCR (78 kDa glucose-regulated protein homolog OS=Neurospora crassa GN=grp78 PE=3 SV=3)

HSP 1 Score: 95.1301 bits (235), Expect = 2.638e-19
Identity = 49/116 (42.24%), Postives = 77/116 (66.38%), Query Frame = -3
Query:  249 EEIEKMVQEAEKYKAEDDEHKKKVEAKNALENYAYNMRNTIKDEK-ISAKLPTADKKKIEDAIEEAIQWLDGN-QLAEADEFEDKMKELECICNPIIAKMYQGGGA--DAGASMDE 584
            EEI++MV EAEKY  ED   ++++EA+N LENYA++++N + DE  +  K+   DK+ I DA++EA  WL+ N   A A++F+++ ++L  +  PI +K+Y  GGA  D  A  DE
Sbjct:  545 EEIDRMVAEAEKYAEEDKATRERIEARNGLENYAFSLKNQVNDEDGLGGKIDEEDKETILDAVKEAQDWLEENAATASAEDFDEQKEKLSNVAYPITSKLYSQGGAGDDEPAGHDE 660          
BLAST of CB304394 vs. ExPASy Swiss-Prot
Match: GRP78_YEAST (78 kDa glucose-regulated protein homolog OS=Saccharomyces cerevisiae GN=KAR2 PE=1 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 7.676e-19
Identity = 47/114 (41.23%), Postives = 76/114 (66.67%), Query Frame = -3
Query:  246 EEIEKMVQEAEKYKAEDDEHKKKVEAKNALENYAYNMRNTIKDEKISAKLPTADKKKIEDAIEEAIQWLDGN-QLAEADEFEDKMKELECICNPIIAKMYQGGGADAGASMDED 584
            EEI++MV+EAEK+ +ED   K KVE++N LENYA++++N +  + +  KL   DK+ + DA  + ++WLD N + A A++F++K + L  +  PI +K+Y  GGAD   + D D
Sbjct:  556 EEIDRMVEEAEKFASEDASIKAKVESRNKLENYAHSLKNQVNGD-LGEKLEEEDKETLLDAANDVLEWLDDNFETAIAEDFDEKFESLSKVAYPITSKLY--GGADGSGAADYD 666          
BLAST of CB304394 vs. ExPASy Swiss-Prot
Match: GRP78_SCHPO (78 kDa glucose-regulated protein homolog OS=Schizosaccharomyces pombe GN=bip1 PE=2 SV=2)

HSP 1 Score: 92.4337 bits (228), Expect = 1.710e-18
Identity = 44/114 (38.60%), Postives = 75/114 (65.79%), Query Frame = -3
Query:  249 EEIEKMVQEAEKYKAEDDEHKKKVEAKNALENYAYNMRNTI-KDEKISAKLPTADKKKIEDAIEEAIQWLD-GNQLAEADEFEDKMKELECICNPIIAKMYQGGGADAGASMDE 584
            E+IE+MV+EAE++  ED   K+++EA+N LENYAY+++     DE++  K+   DK+ + DA+E+  +WL+   + A  +EFED+ ++L+ + +PI  K+Y  G  DA    D+
Sbjct:  541 EDIERMVKEAEEFAEEDKILKERIEARNTLENYAYSLKGQFDDDEQLGGKVDPEDKQAVLDAVEDVAEWLEIHGEDASKEEFEDQRQKLDAVVHPITQKLYSEGAGDADEEDDD 654          
BLAST of CB304394 vs. ExPASy Swiss-Prot
Match: HSP7B_DROME (Heat shock 70 kDa protein cognate 2 OS=Drosophila melanogaster GN=Hsc70-2 PE=1 SV=2)

HSP 1 Score: 91.6633 bits (226), Expect = 2.917e-18
Identity = 46/109 (42.20%), Postives = 67/109 (61.47%), Query Frame = -3
Query:  255 EIEKMVQEAEKYKAEDDEHKKKVEAKNALENYAYNMRNTIKDEKISAKLPTADKKKIEDAIEEAIQWLDGNQLAEADEFEDKMKELECICNPIIAKMYQGGGADAGASM 581
            EI++M+ EAEKYK EDD  +++V++KN LE Y Y  R  + D+  S  L   ++ K+ D       WLD N LAE +EFE  +KE + IC PI++K++  GG    +SM
Sbjct:  515 EIDRMLSEAEKYKVEDDRQRERVQSKNNLEAYIYACRQAV-DDAPSGVLSETERSKVRDKCSSEASWLDKNSLAEKEEFESHLKECQRICTPIMSKIH--GGKKGKSSM 620          
BLAST of CB304394 vs. ExPASy Swiss-Prot
Match: GRP78_PICAN (78 kDa glucose-regulated protein homolog OS=Pichia angusta GN=BiP PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 4.975e-18
Identity = 49/115 (42.61%), Postives = 77/115 (66.96%), Query Frame = -3
Query:  246 EEIEKMVQEAEKYKAEDDEHKKKVEAKNALENYAYNMRNTIKDEK-ISAKLPTADKKKIEDAIEEAIQWLDGN-QLAEADEFEDKMKELECICNPIIAKMYQGGGADAGASMDED 584
            EEIEK ++EAEK+  +D E ++KVE++NALENYA++++N   DE    AKL   DK+ + DAI EA+++L+ N   A  DEF+++ ++L  +  PI +K+Y     DA  + DE+
Sbjct:  546 EEIEKKIEEAEKFAQQDKELREKVESRNALENYAHSLKNQANDENGFGAKLEEDDKETLLDAINEALEFLEDNFDTATKDEFDEQKEKLSKVAYPITSKLY-----DAPPTSDEE 655          
BLAST of CB304394 vs. ExPASy Swiss-Prot
Match: HSP70_CERCA (Heat shock protein 70 OS=Ceratitis capitata PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.448e-17
Identity = 44/111 (39.64%), Postives = 69/111 (62.16%), Query Frame = -3
Query:  258 EIEKMVQEAEKYKAEDDEHKKKVEAKNALENYAYNMRN---TIKDEKISAKLPTADKKKIEDAIEEAIQWLDGNQLAEADEFEDKMKELECICNPIIAKMYQGGGADAGAS 581
            EI++MV EA +Y  ED+  + K+ A+N LE+Y   ++    T+ D     KL   +K ++  A ++ I+WLD  +LA+ +E+EDKM  L  +C PI+ K++ GGGA  GAS
Sbjct:  512 EIDRMVNEAGRYAEEDERQRNKIAARNNLESYVLAVKQAWTTLVD-----KLSEREKSEVTKACDDTIKWLDATRLADKEEYEDKMNTLTKLCTPIMTKLHSGGGAGQGAS 617          
BLAST of CB304394 vs. ExPASy Swiss-Prot
Match: GRP78_CANGA (78 kDa glucose-regulated protein homolog OS=Candida glabrata GN=KAR2 PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 3.225e-17
Identity = 45/114 (39.47%), Postives = 76/114 (66.67%), Query Frame = -3
Query:  246 EEIEKMVQEAEKYKAEDDEHKKKVEAKNALENYAYNMRNTIKDEKISAKLPTADKKKIEDAIEEAIQWLDGN-QLAEADEFEDKMKELECICNPIIAKMYQGGGADAGASMDED 584
            +EI++MV+EAEK+ +ED   + K+EA+N LENYA++++N ++ + ++ KL   DK+ + DA  + ++WL+ N   A  +EFE+K + L     PI +K+Y  GGAD  A + +D
Sbjct:  542 DEIDRMVEEAEKFASEDAVLRTKIEARNKLENYAHSIKNQVEGD-LAEKLEEEDKETLLDAANDTLEWLEDNFDSATTEEFEEKFEALSKTAYPITSKLY--GGADGSAPVYDD 652          
BLAST of CB304394 vs. ExPASy Swiss-Prot
Match: GRP78_ASPNG (78 kDa glucose-regulated protein homolog OS=Aspergillus niger GN=bipA PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 5.501e-17
Identity = 42/107 (39.25%), Postives = 70/107 (65.42%), Query Frame = -3
Query:  270 EEIEKMVQEAEKYKAEDDEHKKKVEAKNALENYAYNMRNTIKDEK-ISAKLPTADKKKIEDAIEEAIQWLDGN-QLAEADEFEDKMKELECICNPIIAKMYQGGGAD 584
            EEI++MV EAE++  ED   K K+EA+N LENYA++++N + DE  +  ++   DK+ I DA++E  +WL+ N   A  ++FE++ ++L  +  PI +K+Y    AD
Sbjct:  555 EEIDRMVAEAEEFAEEDKAIKAKIEARNTLENYAFSLKNQVNDENGLGGQIDEDDKQTILDAVKEVTEWLEDNAATATTEDFEEQKEQLSNVAYPITSKLYGSAPAD 661          
BLAST of CB304394 vs. ExPASy Swiss-Prot
Match: GRP78_ASPKA (78 kDa glucose-regulated protein homolog OS=Aspergillus kawachi GN=bipA PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 5.501e-17
Identity = 42/107 (39.25%), Postives = 70/107 (65.42%), Query Frame = -3
Query:  270 EEIEKMVQEAEKYKAEDDEHKKKVEAKNALENYAYNMRNTIKDEK-ISAKLPTADKKKIEDAIEEAIQWLDGN-QLAEADEFEDKMKELECICNPIIAKMYQGGGAD 584
            EEI++MV EAE++  ED   K K+EA+N LENYA++++N + DE  +  ++   DK+ I DA++E  +WL+ N   A  ++FE++ ++L  +  PI +K+Y    AD
Sbjct:  555 EEIDRMVAEAEEFAEEDKAIKAKIEARNTLENYAFSLKNQVNDENGLGGQIDEDDKQTILDAVKEVTEWLEDNAATATTEDFEEQKEQLSNVAYPITSKLYGSAPAD 661          
BLAST of CB304394 vs. ExPASy Swiss-Prot
Match: GRP78_ASPAW (78 kDa glucose-regulated protein homolog OS=Aspergillus awamori GN=bipA PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 5.501e-17
Identity = 42/107 (39.25%), Postives = 70/107 (65.42%), Query Frame = -3
Query:  270 EEIEKMVQEAEKYKAEDDEHKKKVEAKNALENYAYNMRNTIKDEK-ISAKLPTADKKKIEDAIEEAIQWLDGN-QLAEADEFEDKMKELECICNPIIAKMYQGGGAD 584
            EEI++MV EAE++  ED   K K+EA+N LENYA++++N + DE  +  ++   DK+ I DA++E  +WL+ N   A  ++FE++ ++L  +  PI +K+Y    AD
Sbjct:  555 EEIDRMVAEAEEFAEEDKAIKAKIEARNTLENYAFSLKNQVNDENGLGGQIDEDDKQTILDAVKEVTEWLEDNAATATTEDFEEQKEQLSNVAYPITSKLYGSAPAD 661          
The following BLAST results are available for this feature:
BLAST of CB304394 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 166
Match NameE-valueIdentityDescription
GRP78_NEUCR2.638e-1942.2478 kDa glucose-regulated protein homolog OS=Neuros... [more]
GRP78_YEAST7.676e-1941.2378 kDa glucose-regulated protein homolog OS=Saccha... [more]
GRP78_SCHPO1.710e-1838.6078 kDa glucose-regulated protein homolog OS=Schizo... [more]
HSP7B_DROME2.917e-1842.20Heat shock 70 kDa protein cognate 2 OS=Drosophila ... [more]
GRP78_PICAN4.975e-1842.6178 kDa glucose-regulated protein homolog OS=Pichia... [more]
HSP70_CERCA1.448e-1739.64Heat shock protein 70 OS=Ceratitis capitata PE=2 S... [more]
GRP78_CANGA3.225e-1739.4778 kDa glucose-regulated protein homolog OS=Candid... [more]
GRP78_ASPNG5.501e-1739.2578 kDa glucose-regulated protein homolog OS=Asperg... [more]
GRP78_ASPKA5.501e-1739.2578 kDa glucose-regulated protein homolog OS=Asperg... [more]
GRP78_ASPAW5.501e-1739.2578 kDa glucose-regulated protein homolog OS=Asperg... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0001_IIIaR_B11 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0001_IIIaR_B11 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304394 ID=CB304394; Name=CB304394; organism=Citrus sinensis; type=EST; length=586bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCCTGAAGGAAAAATAAGACA
TTGCTTAAAAACATAATATCTTTATGCATACACCAGGAAACAGTATTTAC
ATGTAACAGAAGCAGGAAAAGGAAGAAAAGATCACACCCCCAACTCAACC
CCTAATCATTAAACAACATTAAGCATAAATCCTCAAATTTAATCCACCTC
CTCAATCTTGGGGCCAGCACCGCTACCAGCACCAGCAGAAGGACCATCCT
CATCCATACTTGCACCAGCATCAGCTCCACCTCCTTGGTACATCTTGGCA
ATAATTGGGTTGCAGATGCACTCCAGCTCTTTCATCTTATCTTCAAACTC
ATCTGCCTCTGCGAGCTGGTTCCCGTCAAGCCATTGGATGGCCTCCTCAA
TGGCATCTTCAATTTTCTTCTTGTCAGCAGTGGGAAGCTTTGCGCTGATC
TTTTCATCCTTGATTGTGTTTCTCATGTTGTAAGCATAATTCTCAAGAGC
ATTCTTGGCCTCCACCTTTTTCTTGTGCTCGTCATCCTCGGCCTTGTATT
TTTCTGCCTCTTGTACCATCTTCTCTATCTCCTCCT
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