CB304394

Overview
NameCB304394
Unique NameCB304394
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length586
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13846 contig Csv1_Contig13846:1..560. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304394 vs. ExPASy Swiss-Prot
Match: HSP70_PYRSA (Heat shock 70 kDa protein OS=Pyrenomonas salina GN=HSP70 PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 8.182e-29
Identity = 62/130 (47.69%), Postives = 89/130 (68.46%), Query Frame = -3
Query:  195 EEIEKMVQEAEKYKAEDDEHKKKVEAKNALENYAYNMRNTIKDEKISAKLPTADKKKIEDAIEEAIQWLDGNQLAEADEFEDKMKELECICNPIIAKMYQGGGADAGASMDEDXXXXXXXXXXXPKIEEV 584
            EEIE+MV+EAEKYK ED++  KK+EAKN+LENYAYN+RNT++DEK+  K+   DKK IE+ ++E +++++ N+  E +E+E+K KEL+   NPII+K+YQ G      +               PKIEEV
Sbjct:  519 EEIERMVEEAEKYKTEDEKLDKKLEAKNSLENYAYNIRNTVRDEKLKEKIQEEDKKSIEEKVKEVLEFIETNEDLEKEEYEEKEKELKNFANPIISKLYQQGSVPDMGNFSTGQNEQDDNANMGPKIEEV 648          
BLAST of CB304394 vs. ExPASy Swiss-Prot
Match: BIP_SOLLC (Luminal-binding protein OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 8.182e-29
Identity = 60/116 (51.72%), Postives = 89/116 (76.72%), Query Frame = -3
Query:  246 EEIEKMVQEAEKYKAEDDEHKKKVEAKNALENYAYNMRNTIKD-EKISAKLPTADKKKIEDAIEEAIQWLDGNQLAEADEFEDKMKELECICNPIIAKMYQ--GGGADAGASMDED 584
            EEIE+MV+EAE++  ED + K+K++A+NALE Y YNM+N I D +K++ KL + +K+KIE A +EA++WLD NQ AE +++++K+KE+E +CNPII  +YQ  GG    GAS +ED
Sbjct:  545 EEIERMVREAEEFAEEDKKVKEKIDARNALETYVYNMKNQINDKDKLADKLESDEKEKIETATKEALEWLDDNQSAEKEDYDEKLKEVEAVCNPIITAVYQRSGGAPGGGASEEED 660          
BLAST of CB304394 vs. ExPASy Swiss-Prot
Match: MAG29_DERFA (Allergen MAG29 (Fragment) OS=Dermatophagoides farinae GN=MAG29 PE=1 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.069e-28
Identity = 58/108 (53.70%), Postives = 81/108 (75.00%), Query Frame = -3
Query:  264 EEIEKMVQEAEKYKAEDDEHKKKVEAKNALENYAYNMRNTIKDEKISAKLPTADKKKIEDAIEEAIQWLDGNQLAEADEFEDKMKELECICNPIIAKMY-QGGGADAG 584
            ++IE+MV+EAE YK EDD+ + ++ AKN+LE YA+ M+ T+ +E I +K+   D+KKI D ++E ++WLD N LAE DEFE + KELE +CNPII K+Y Q GGA AG
Sbjct:    2 DDIERMVKEAESYKEEDDKQRDRIAAKNSLEGYAFQMKATLDEEAIKSKVSEEDRKKILDKVDEVLKWLDANALAEKDEFEHQRKELESVCNPIITKLYQQAGGAGAG 109          
BLAST of CB304394 vs. ExPASy Swiss-Prot
Match: BIP8_TOBAC (Luminal-binding protein 8 (Fragment) OS=Nicotiana tabacum GN=BIP8 PE=2 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.069e-28
Identity = 61/118 (51.69%), Postives = 92/118 (77.97%), Query Frame = -3
Query:  246 EEIEKMVQEAEKYKAEDDEHKKKVEAKNALENYAYNMRNTIKD-EKISAKLPTADKKKIEDAIEEAIQWLDGNQLAEADEFEDKMKELECICNPIIAKMYQ--GG--GADAGASMDED 584
            EEIE+MV+EAE++  ED + K++++A+N+LE Y YNMRN I D +K++ KL + +K+KIE A +EA++WLD NQ AE +++E+K+KE+E +CNPII  +YQ  GG  G ++GAS D+D
Sbjct:  172 EEIERMVKEAEEFAEEDKKVKERIDARNSLETYVYNMRNQINDKDKLADKLESDEKEKIETATKEALEWLDDNQSAEKEDYEEKLKEVEAVCNPIITAVYQKSGGAPGGESGASEDDD 289          
BLAST of CB304394 vs. ExPASy Swiss-Prot
Match: BIP4_TOBAC (Luminal-binding protein 4 OS=Nicotiana tabacum GN=BIP4 PE=2 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.069e-28
Identity = 61/118 (51.69%), Postives = 92/118 (77.97%), Query Frame = -3
Query:  246 EEIEKMVQEAEKYKAEDDEHKKKVEAKNALENYAYNMRNTIKD-EKISAKLPTADKKKIEDAIEEAIQWLDGNQLAEADEFEDKMKELECICNPIIAKMYQ--GG--GADAGASMDED 584
            EEIE+MV+EAE++  ED + K++++A+N+LE Y YNMRN I D +K++ KL + +K+KIE A +EA++WLD NQ AE +++E+K+KE+E +CNPII  +YQ  GG  G ++GAS D+D
Sbjct:  546 EEIERMVKEAEEFAEEDKKVKERIDARNSLETYVYNMRNQINDKDKLADKLESDEKEKIETATKEALEWLDDNQSAEKEDYEEKLKEVEAVCNPIITAVYQKSGGAPGGESGASEDDD 663          
BLAST of CB304394 vs. ExPASy Swiss-Prot
Match: BIP3_TOBAC (Luminal-binding protein 3 (Fragment) OS=Nicotiana tabacum GN=BIP3 PE=2 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.069e-28
Identity = 58/115 (50.43%), Postives = 89/115 (77.39%), Query Frame = -3
Query:  246 EEIEKMVQEAEKYKAEDDEHKKKVEAKNALENYAYNMRNTIKD-EKISAKLPTADKKKIEDAIEEAIQWLDGNQLAEADEFEDKMKELECICNPIIAKMYQ-GGGADAGASMDED 584
            EEIE+MV+EAE++  ED + K++++A+N LE Y YNM+N I D +K++ KL + +K+KIE A++EA++WLD NQ AE +++E+K+KE+E +CNPII  +YQ  GGA  G+S  E+
Sbjct:   48 EEIERMVREAEEFAEEDKKVKERIDARNGLETYVYNMKNQINDKDKLADKLESDEKEKIETAVKEALEWLDDNQSAEKEDYEEKLKEVEAVCNPIITAVYQRSGGASGGSSSSEE 162          
BLAST of CB304394 vs. ExPASy Swiss-Prot
Match: HSP7C_CHICK (Heat shock cognate 71 kDa protein OS=Gallus gallus GN=HSPA8 PE=1 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 1.823e-28
Identity = 58/107 (54.21%), Postives = 78/107 (72.90%), Query Frame = -3
Query:  264 EEIEKMVQEAEKYKAEDDEHKKKVEAKNALENYAYNMRNTIKDEKISAKLPTADKKKIEDAIEEAIQWLDGNQLAEADEFEDKMKELECICNPIIAKMYQGGGADAG 584
            E+IE+MVQEAEKYKAED++ + KV +KN+L++YA+NM+ T++DEK+  K+   D + I D   E I WLD NQ AE +EFE + KELE +CNPII K+YQ  G   G
Sbjct:  513 EDIERMVQEAEKYKAEDEKQRDKVSSKNSLDSYAFNMKATVEDEKLPGKILDEDHQNILDKCNEIINWLDKNQTAEKEEFEHQQKELEKVCNPIITKLYQSAGGMPG 619          
BLAST of CB304394 vs. ExPASy Swiss-Prot
Match: HSP72_SCHPO (Probable heat shock protein ssa2 OS=Schizosaccharomyces pombe GN=ssa2 PE=1 SV=3)

HSP 1 Score: 125.561 bits (314), Expect = 1.823e-28
Identity = 56/107 (52.34%), Postives = 79/107 (73.83%), Query Frame = -3
Query:  264 EEIEKMVQEAEKYKAEDDEHKKKVEAKNALENYAYNMRNTIKDEKISAKLPTADKKKIEDAIEEAIQWLDGNQLAEADEFEDKMKELECICNPIIAKMYQGGGADAG 584
            EEI++MV EAEKYKAED+    +++AKN LE+YAY++RN++ D  +  K+  +DK+ ++ A++E I+WLD N  A  DEFE K KELE + NPI+AK+YQ GGA  G
Sbjct:  511 EEIDRMVAEAEKYKAEDEAESGRIQAKNHLESYAYSLRNSLDDPNLKDKVDASDKETVDKAVKETIEWLDSNTTAAKDEFEAKQKELESVANPIMAKIYQAGGAPGG 617          
BLAST of CB304394 vs. ExPASy Swiss-Prot
Match: BIP3_MAIZE (Luminal-binding protein 3 OS=Zea mays GN=BIPE3 PE=2 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 1.823e-28
Identity = 56/120 (46.67%), Postives = 90/120 (75.00%), Query Frame = -3
Query:  246 EEIEKMVQEAEKYKAEDDEHKKKVEAKNALENYAYNMRNTIKD-EKISAKLPTADKKKIEDAIEEAIQWLDGNQLAEADEFEDKMKELECICNPIIAKMYQ------GGGADAGASMDED 584
            EEI++MV+EAE++  ED + K++++A+N LE Y YNM+NT+ D +K++ KL   +K+K+E+A++EA++WLD NQ AE +++E+K+KE+E +CNPI++ +YQ      GG AD G   D D
Sbjct:  542 EEIDRMVREAEEFAEEDKKVKERIDARNQLETYVYNMKNTVGDKDKLADKLEAEEKEKVEEALKEALEWLDDNQSAEKEDYEEKLKEVEAVCNPIVSAVYQRSGGAPGGDADGGVDDDHD 661          
BLAST of CB304394 vs. ExPASy Swiss-Prot
Match: BIP2_MAIZE (Luminal-binding protein 2 OS=Zea mays GN=BIPE2 PE=1 SV=3)

HSP 1 Score: 125.561 bits (314), Expect = 1.823e-28
Identity = 56/120 (46.67%), Postives = 90/120 (75.00%), Query Frame = -3
Query:  246 EEIEKMVQEAEKYKAEDDEHKKKVEAKNALENYAYNMRNTIKD-EKISAKLPTADKKKIEDAIEEAIQWLDGNQLAEADEFEDKMKELECICNPIIAKMYQ------GGGADAGASMDED 584
            EEI++MV+EAE++  ED + K++++A+N LE Y YNM+NT+ D +K++ KL   +K+K+E+A++EA++WLD NQ AE +++E+K+KE+E +CNPI++ +YQ      GG AD G   D D
Sbjct:  542 EEIDRMVREAEEFAEEDKKVKERIDARNQLETYVYNMKNTVGDKDKLADKLEAEEKEKVEEALKEALEWLDDNQSAEKEDYEEKLKEVEAVCNPIVSAVYQRSGGAPGGDADGGVDDDHD 661          
The following BLAST results are available for this feature:
BLAST of CB304394 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 166
Match NameE-valueIdentityDescription
HSP70_PYRSA8.182e-2947.69Heat shock 70 kDa protein OS=Pyrenomonas salina GN... [more]
BIP_SOLLC8.182e-2951.72Luminal-binding protein OS=Solanum lycopersicum PE... [more]
MAG29_DERFA1.069e-2853.70Allergen MAG29 (Fragment) OS=Dermatophagoides fari... [more]
BIP8_TOBAC1.069e-2851.69Luminal-binding protein 8 (Fragment) OS=Nicotiana ... [more]
BIP4_TOBAC1.069e-2851.69Luminal-binding protein 4 OS=Nicotiana tabacum GN=... [more]
BIP3_TOBAC1.069e-2850.43Luminal-binding protein 3 (Fragment) OS=Nicotiana ... [more]
HSP7C_CHICK1.823e-2854.21Heat shock cognate 71 kDa protein OS=Gallus gallus... [more]
HSP72_SCHPO1.823e-2852.34Probable heat shock protein ssa2 OS=Schizosaccharo... [more]
BIP3_MAIZE1.823e-2846.67Luminal-binding protein 3 OS=Zea mays GN=BIPE3 PE=... [more]
BIP2_MAIZE1.823e-2846.67Luminal-binding protein 2 OS=Zea mays GN=BIPE2 PE=... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0001_IIIaR_B11 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0001_IIIaR_B11 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304394 ID=CB304394; Name=CB304394; organism=Citrus sinensis; type=EST; length=586bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCCTGAAGGAAAAATAAGACA
TTGCTTAAAAACATAATATCTTTATGCATACACCAGGAAACAGTATTTAC
ATGTAACAGAAGCAGGAAAAGGAAGAAAAGATCACACCCCCAACTCAACC
CCTAATCATTAAACAACATTAAGCATAAATCCTCAAATTTAATCCACCTC
CTCAATCTTGGGGCCAGCACCGCTACCAGCACCAGCAGAAGGACCATCCT
CATCCATACTTGCACCAGCATCAGCTCCACCTCCTTGGTACATCTTGGCA
ATAATTGGGTTGCAGATGCACTCCAGCTCTTTCATCTTATCTTCAAACTC
ATCTGCCTCTGCGAGCTGGTTCCCGTCAAGCCATTGGATGGCCTCCTCAA
TGGCATCTTCAATTTTCTTCTTGTCAGCAGTGGGAAGCTTTGCGCTGATC
TTTTCATCCTTGATTGTGTTTCTCATGTTGTAAGCATAATTCTCAAGAGC
ATTCTTGGCCTCCACCTTTTTCTTGTGCTCGTCATCCTCGGCCTTGTATT
TTTCTGCCTCTTGTACCATCTTCTCTATCTCCTCCT
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