CB304414

Overview
NameCB304414
Unique NameCB304414
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length397
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CB304414_ssr184 microsatellite CB304414_ssr184:184..195. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig13803 contig Csv1_Contig13803:264..660. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304414 vs. ExPASy Swiss-Prot
Match: NLTP1_GOSHI (Non-specific lipid-transfer protein OS=Gossypium hirsutum PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.142e-11
Identity = 31/50 (62.00%), Postives = 37/50 (74.00%), Query Frame = -1
Query:  248 PDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRVR 397
            P RQAAC C+K A   I GI   +A+GLP +CGV IPYKISPSTDC+ V+
Sbjct:   67 PVRQAACRCIKSAAAGITGINFGLASGLPGKCGVNIPYKISPSTDCNSVK 116          
BLAST of CB304414 vs. ExPASy Swiss-Prot
Match: NLTP_PRUAV (Non-specific lipid-transfer protein OS=Prunus avium PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.491e-11
Identity = 28/49 (57.14%), Postives = 37/49 (75.51%), Query Frame = -1
Query:  248 DRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRVR 394
            DRQ ACNCLK+   ++ G+  N AA LP +CGV +PYKISPST+C+ V+
Sbjct:   69 DRQTACNCLKQLSASVPGVNANNAAALPGKCGVNVPYKISPSTNCATVK 117          
BLAST of CB304414 vs. ExPASy Swiss-Prot
Match: NLTP2_SORBI (Non-specific lipid-transfer protein 2 OS=Sorghum bicolor GN=LTP2 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.491e-11
Identity = 32/48 (66.67%), Postives = 36/48 (75.00%), Query Frame = -1
Query:  251 DRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRV 394
            DR+AACNCLK A   IRG+    AA +PS+CGV IPY IS STDCSRV
Sbjct:   74 DRRAACNCLKNAARGIRGLNVGKAASIPSKCGVSIPYTISTSTDCSRV 121          
BLAST of CB304414 vs. ExPASy Swiss-Prot
Match: NLTP1_PHAAU (Non-specific lipid-transfer protein 1 OS=Phaseolus aureus PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.491e-11
Identity = 29/48 (60.42%), Postives = 36/48 (75.00%), Query Frame = -1
Query:  251 DRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRV 394
            DR+A C+CLK A G +RGI PN A  LP +CGV IPYKIS ST+C+ +
Sbjct:   43 DRRAVCSCLKAAAGAVRGINPNNAEALPGKCGVNIPYKISTSTNCNSI 90          
BLAST of CB304414 vs. ExPASy Swiss-Prot
Match: NLTP1_LENCU (Non-specific lipid-transfer protein 1 OS=Lens culinaris PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.491e-11
Identity = 29/49 (59.18%), Postives = 38/49 (77.55%), Query Frame = -1
Query:  248 DRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRVR 394
            DR+AACNCLK + G+I G+KP   A LP +CGVR+PY IS ST+C+ +R
Sbjct:   69 DRRAACNCLKSSAGSISGLKPGNVATLPGKCGVRLPYTISTSTNCNTIR 117          
BLAST of CB304414 vs. ExPASy Swiss-Prot
Match: NLTP_CICAR (Non-specific lipid-transfer protein OS=Cicer arietinum PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 1.947e-11
Identity = 31/50 (62.00%), Postives = 37/50 (74.00%), Query Frame = -1
Query:  248 PDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRVR 397
            PDRQAACNCLK A G+I  +  N AA LP +C V IPYKIS ST+C+ +R
Sbjct:   66 PDRQAACNCLKSAAGSISRLNANNAAALPGKCVVNIPYKISTSTNCATIR 115          
BLAST of CB304414 vs. ExPASy Swiss-Prot
Match: NLTP5_LENCU (Non-specific lipid-transfer protein 5 OS=Lens culinaris PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.543e-11
Identity = 30/50 (60.00%), Postives = 37/50 (74.00%), Query Frame = -1
Query:  248 PDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRVR 397
            PDRQAACNC+K A  +I  +  N AA LP +CGV IPYKIS ST+C+ V+
Sbjct:   67 PDRQAACNCMKSAASSITKLNTNNAAALPGKCGVNIPYKISTSTNCNTVK 116          
BLAST of CB304414 vs. ExPASy Swiss-Prot
Match: NLTP6_GOSHI (Non-specific lipid-transfer protein 6 OS=Gossypium hirsutum GN=LTP6 PE=2 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.338e-11
Identity = 31/49 (63.27%), Postives = 33/49 (67.35%), Query Frame = -1
Query:  248 DRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRVR 394
            DRQAAC C+K     I  I   VAAGLP QC V IPYKISPS DC RV+
Sbjct:   72 DRQAACKCIKSLAADISDINYGVAAGLPGQCNVHIPYKISPSIDCKRVK 120          
BLAST of CB304414 vs. ExPASy Swiss-Prot
Match: NLTP_MAIZE (Non-specific lipid-transfer protein OS=Zea mays PE=1 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.666e-11
Identity = 30/48 (62.50%), Postives = 35/48 (72.92%), Query Frame = -1
Query:  251 DRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRV 394
            DR+AACNCLK A   + G+    AA +PS+CGV IPY IS STDCSRV
Sbjct:   72 DRRAACNCLKNAAAGVSGLNAGNAASIPSKCGVSIPYTISTSTDCSRV 119          
BLAST of CB304414 vs. ExPASy Swiss-Prot
Match: NLTP3_LENCU (Non-specific lipid-transfer protein 3 OS=Lens culinaris PE=3 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.665e-11
Identity = 28/49 (57.14%), Postives = 35/49 (71.43%), Query Frame = -1
Query:  248 DRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRVR 394
            DRQAACNCLK A G I  + P  AA LP +C V IPYKIS +T+C+ ++
Sbjct:   69 DRQAACNCLKTAAGNINNLNPGNAAALPGKCNVNIPYKISTTTNCNTIK 117          
The following BLAST results are available for this feature:
BLAST of CB304414 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 35
Match NameE-valueIdentityDescription
NLTP1_GOSHI1.142e-1162.00Non-specific lipid-transfer protein OS=Gossypium h... [more]
NLTP_PRUAV1.491e-1157.14Non-specific lipid-transfer protein OS=Prunus aviu... [more]
NLTP2_SORBI1.491e-1166.67Non-specific lipid-transfer protein 2 OS=Sorghum b... [more]
NLTP1_PHAAU1.491e-1160.42Non-specific lipid-transfer protein 1 OS=Phaseolus... [more]
NLTP1_LENCU1.491e-1159.18Non-specific lipid-transfer protein 1 OS=Lens culi... [more]
NLTP_CICAR1.947e-1162.00Non-specific lipid-transfer protein OS=Cicer ariet... [more]
NLTP5_LENCU2.543e-1160.00Non-specific lipid-transfer protein 5 OS=Lens culi... [more]
NLTP6_GOSHI4.338e-1163.27Non-specific lipid-transfer protein 6 OS=Gossypium... [more]
NLTP_MAIZE5.666e-1162.50Non-specific lipid-transfer protein OS=Zea mays PE... [more]
NLTP3_LENCU9.665e-1157.14Non-specific lipid-transfer protein 3 OS=Lens culi... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0001_IIIaR_E02 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0001_IIIaR_E02 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304414 ID=CB304414; Name=CB304414; organism=Citrus sinensis; type=EST; length=397bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAATACCACAAAATAACTAT
AATTAATCACTCAAAACACAGATCGCGTTTACATATTTAATATGACATAA
AAAGCAAATATACAAACATGACATGAGAGTGAAACTCATACAAGTGGAGA
CTCGTTCGGACAAAGAAATTAACATAGATATTCTTTATTTATTTATTCTT
CTCAGTCAATCATACTTGGAAAGTCACAGAGCTCAAACTCAACTTCACCT
GACCCTAGAGCAGTCGGTGCTGGGGCTGATCTTGTAAGGAATTCTGACTC
CACATTGACTAGGAAGGCCAGCGGCAACATTAGGTTTGATGCCGCGGATT
GTTCCGTAAGCTCGTTTCAAGCAGTTGCATGCAGCTTGGCGGTCAGG
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