CB304414

Overview
NameCB304414
Unique NameCB304414
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length397
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CB304414_ssr184 microsatellite CB304414_ssr184:184..195. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig13803 contig Csv1_Contig13803:264..660. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CB304414 vs. ExPASy Swiss-Prot
Match: NLTP2_SOLPN (Non-specific lipid-transfer protein 2 OS=Solanum pennellii GN=LTP2 PE=3 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.665e-11
Identity = 30/49 (61.22%), Postives = 34/49 (69.39%), Query Frame = -1 
Query:  248 DRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRVR 394
            DRQ AC CLK A  +  G+    AA LPS C V IPYKISPSTDCS+V+
Sbjct:   66 DRQTACTCLKSAASSFTGLDLGKAASLPSTCSVNIPYKISPSTDCSKVQ 114
[Close]
BLAST of CB304414 vs. ExPASy Swiss-Prot
Match: NLTP2_ORYSI (Non-specific lipid-transfer protein 2 OS=Oryza sativa subsp. indica GN=LTP2-A PE=3 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.665e-11
Identity = 29/48 (60.42%), Postives = 34/48 (70.83%), Query Frame = -1 
Query:  251 DRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRV 394
            DR+ ACNCLK   G+I G+    AA +PS+CGV IPY ISPS DCS V
Sbjct:   70 DRRTACNCLKNVAGSISGLNAGNAASIPSKCGVSIPYTISPSIDCSSV 117
[Close]
BLAST of CB304414 vs. ExPASy Swiss-Prot
Match: NLTP1_SORBI (Non-specific lipid-transfer protein 1 OS=Sorghum bicolor GN=LTP1 PE=3 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.665e-11
Identity = 30/48 (62.50%), Postives = 35/48 (72.92%), Query Frame = -1 
Query:  251 DRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRV 394
            DR+AACNCLK A   I G+    AA +PS+CGV +PY IS STDCSRV
Sbjct:   70 DRRAACNCLKNAARGISGLNAGNAASIPSKCGVSVPYTISTSTDCSRV 117
[Close]
BLAST of CB304414 vs. ExPASy Swiss-Prot
Match: NLT2B_ORYSJ (Non-specific lipid-transfer protein 2B OS=Oryza sativa subsp. japonica GN=LTP2-B PE=2 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.665e-11
Identity = 29/48 (60.42%), Postives = 34/48 (70.83%), Query Frame = -1 
Query:  251 DRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRV 394
            DR+ ACNCLK   G+I G+    AA +PS+CGV IPY ISPS DCS V
Sbjct:   69 DRRTACNCLKNVAGSISGLNAGNAASIPSKCGVSIPYTISPSIDCSSV 116
[Close]
BLAST of CB304414 vs. ExPASy Swiss-Prot
Match: NLT2A_ORYSJ (Non-specific lipid-transfer protein 2A OS=Oryza sativa subsp. japonica GN=LTP2-A PE=3 SV=2)

HSP 1 Score: 65.4698 bits (158), Expect = 9.665e-11
Identity = 29/48 (60.42%), Postives = 34/48 (70.83%), Query Frame = -1 
Query:  251 DRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRV 394
            DR+ ACNCLK   G+I G+    AA +PS+CGV IPY ISPS DCS V
Sbjct:   70 DRRTACNCLKNVAGSISGLNAGNAASIPSKCGVSIPYTISPSIDCSSV 117
The following BLAST results are available for this feature:
BLAST of CB304414 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 35
Match NameE-valueIdentityDescription
NLTP2_SOLPN9.665e-1161.22Non-specific lipid-transfer protein 2 OS=Solanum p... [more]
NLTP2_ORYSI9.665e-1160.42Non-specific lipid-transfer protein 2 OS=Oryza sat... [more]
NLTP1_SORBI9.665e-1162.50Non-specific lipid-transfer protein 1 OS=Sorghum b... [more]
NLT2B_ORYSJ9.665e-1160.42Non-specific lipid-transfer protein 2B OS=Oryza sa... [more]
NLT2A_ORYSJ9.665e-1160.42Non-specific lipid-transfer protein 2A OS=Oryza sa... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0001_IIIaR_E02 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0001_IIIaR_E02 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304414 ID=CB304414; Name=CB304414; organism=Citrus sinensis; type=EST; length=397bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAATACCACAAAATAACTAT
AATTAATCACTCAAAACACAGATCGCGTTTACATATTTAATATGACATAA
AAAGCAAATATACAAACATGACATGAGAGTGAAACTCATACAAGTGGAGA
CTCGTTCGGACAAAGAAATTAACATAGATATTCTTTATTTATTTATTCTT
CTCAGTCAATCATACTTGGAAAGTCACAGAGCTCAAACTCAACTTCACCT
GACCCTAGAGCAGTCGGTGCTGGGGCTGATCTTGTAAGGAATTCTGACTC
CACATTGACTAGGAAGGCCAGCGGCAACATTAGGTTTGATGCCGCGGATT
GTTCCGTAAGCTCGTTTCAAGCAGTTGCATGCAGCTTGGCGGTCAGG
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