CB304427

Overview
NameCB304427
Unique NameCB304427
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length449
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8456 contig Csv1_Contig8456:235..684. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304427 vs. ExPASy Swiss-Prot
Match: ADF9_ORYSJ (Actin-depolymerizing factor 9 OS=Oryza sativa subsp. japonica GN=ADF9 PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 6.263e-20
Identity = 45/60 (75.00%), Postives = 52/60 (86.67%), Query Frame = -3
Query:  268 NCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQATDPTEMDLEELRNRA 447
            NCQKSKIFF +WSP T+R R+KMLYA+SKDRFRRELDGI  EIQATDP+EM L+ +R RA
Sbjct:   79 NCQKSKIFFFSWSPDTARTRSKMLYASSKDRFRRELDGIQCEIQATDPSEMSLDIIRARA 138          
BLAST of CB304427 vs. ExPASy Swiss-Prot
Match: ADF_LILLO (Actin-depolymerizing factor OS=Lilium longiflorum PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 8.179e-20
Identity = 42/60 (70.00%), Postives = 54/60 (90.00%), Query Frame = -3
Query:  268 NCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQATDPTEMDLEELRNRA 447
            NCQKSKIFFI+WSP TSR+R+KMLYA++KDRF+RELDGI  E+QATDP+EM ++ ++ RA
Sbjct:   79 NCQKSKIFFISWSPDTSRVRSKMLYASTKDRFKRELDGIQVELQATDPSEMSMDIIKARA 138          
BLAST of CB304427 vs. ExPASy Swiss-Prot
Match: ADF8_ARATH (Actin-depolymerizing factor 8 OS=Arabidopsis thaliana GN=ADF8 PE=2 SV=2)

HSP 1 Score: 95.9005 bits (237), Expect = 8.179e-20
Identity = 42/59 (71.19%), Postives = 53/59 (89.83%), Query Frame = -3
Query:  271 NCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQATDPTEMDLEELRNR 447
            NCQKSKIFFIAWSP TSR+R+KMLYA+SKDRF+RE++GI  E+QATDP+EM L+ ++ R
Sbjct:   79 NCQKSKIFFIAWSPDTSRVRSKMLYASSKDRFKREMEGIQVELQATDPSEMSLDIIKGR 137          
BLAST of CB304427 vs. ExPASy Swiss-Prot
Match: ADF1_MAIZE (Actin-depolymerizing factor 1 OS=Zea mays GN=ADF1 PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 8.179e-20
Identity = 44/61 (72.13%), Postives = 53/61 (86.89%), Query Frame = -3
Query:  265 NCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQATDPTEMDLEELRNRAS 447
            NCQKSKIFF +WSP T+R R+KMLYA+SKDRFRRELDGI  EIQATDP+EM L+ +R+R +
Sbjct:   79 NCQKSKIFFFSWSPDTARTRSKMLYASSKDRFRRELDGIQCEIQATDPSEMSLDIVRSRTN 139          
BLAST of CB304427 vs. ExPASy Swiss-Prot
Match: ADF6_ORYSJ (Actin-depolymerizing factor 6 OS=Oryza sativa subsp. japonica GN=ADF6 PE=2 SV=2)

HSP 1 Score: 95.5153 bits (236), Expect = 1.068e-19
Identity = 42/60 (70.00%), Postives = 54/60 (90.00%), Query Frame = -3
Query:  268 NCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQATDPTEMDLEELRNRA 447
            NCQKSKIFFI+WSP TS++R+KMLYA+SKDRF+RELDGI  E+QATDP+EM ++ ++ RA
Sbjct:   79 NCQKSKIFFISWSPDTSKVRSKMLYASSKDRFKRELDGIQVELQATDPSEMSMDIVKARA 138          
BLAST of CB304427 vs. ExPASy Swiss-Prot
Match: ADF2_ARATH (Actin-depolymerizing factor 2 OS=Arabidopsis thaliana GN=ADF2 PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 1.068e-19
Identity = 42/61 (68.85%), Postives = 53/61 (86.89%), Query Frame = -3
Query:  265 NCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQATDPTEMDLEELRNRAS 447
            NCQKSKIFFIAWSP T+++R KM+YA+SKDRF+RELDGI  E+QATDPTEM L+  ++R +
Sbjct:   77 NCQKSKIFFIAWSPDTAKVRDKMIYASSKDRFKRELDGIQVELQATDPTEMGLDVFKSRTN 137          
BLAST of CB304427 vs. ExPASy Swiss-Prot
Match: ADF_BRANA (Actin-depolymerizing factor (Fragment) OS=Brassica napus PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 1.395e-19
Identity = 42/60 (70.00%), Postives = 53/60 (88.33%), Query Frame = -3
Query:  268 NCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQATDPTEMDLEELRNRA 447
            NCQKSKIFFIAWSP +SR+R KM+YA+SKDRF+RELDGI  E+QATDP+EM  + +++RA
Sbjct:   66 NCQKSKIFFIAWSPDSSRVRMKMVYASSKDRFKRELDGIQVELQATDPSEMSFDIIKSRA 125          
BLAST of CB304427 vs. ExPASy Swiss-Prot
Match: ADF7_ARATH (Actin-depolymerizing factor 7 OS=Arabidopsis thaliana GN=ADF7 PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 1.395e-19
Identity = 42/60 (70.00%), Postives = 53/60 (88.33%), Query Frame = -3
Query:  268 NCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQATDPTEMDLEELRNRA 447
            NCQKSKIFFIAWSP +SR+R KM+YA+SKDRF+RELDGI  E+QATDP+EM  + +++RA
Sbjct:   77 NCQKSKIFFIAWSPDSSRVRMKMVYASSKDRFKRELDGIQVELQATDPSEMSFDIIKSRA 136          
BLAST of CB304427 vs. ExPASy Swiss-Prot
Match: ADF2_MAIZE (Actin-depolymerizing factor 2 OS=Zea mays GN=ADF2 PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 1.822e-19
Identity = 43/61 (70.49%), Postives = 53/61 (86.89%), Query Frame = -3
Query:  265 NCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQATDPTEMDLEELRNRAS 447
            NCQKSKIFF +WSP T+R R+KMLYA+SKDRFRRELDGI  EIQATDP+EM L+ +++R +
Sbjct:   79 NCQKSKIFFFSWSPDTARTRSKMLYASSKDRFRRELDGIQCEIQATDPSEMSLDIVKSRTN 139          
BLAST of CB304427 vs. ExPASy Swiss-Prot
Match: ADF5_ARATH (Actin-depolymerizing factor 5 OS=Arabidopsis thaliana GN=ADF5 PE=1 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 2.380e-19
Identity = 43/60 (71.67%), Postives = 52/60 (86.67%), Query Frame = -3
Query:  268 NCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQATDPTEMDLEELRNRA 447
            NC+KSKIFFIAWSP  S+IRAK+LYATSKD  RR L+GIHYE+QATDPTEM  + +++RA
Sbjct:   83 NCRKSKIFFIAWSPEASKIRAKILYATSKDGLRRVLEGIHYELQATDPTEMGFDIIQDRA 142          
The following BLAST results are available for this feature:
BLAST of CB304427 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
ADF9_ORYSJ6.263e-2075.00Actin-depolymerizing factor 9 OS=Oryza sativa subs... [more]
ADF_LILLO8.179e-2070.00Actin-depolymerizing factor OS=Lilium longiflorum ... [more]
ADF8_ARATH8.179e-2071.19Actin-depolymerizing factor 8 OS=Arabidopsis thali... [more]
ADF1_MAIZE8.179e-2072.13Actin-depolymerizing factor 1 OS=Zea mays GN=ADF1 ... [more]
ADF6_ORYSJ1.068e-1970.00Actin-depolymerizing factor 6 OS=Oryza sativa subs... [more]
ADF2_ARATH1.068e-1968.85Actin-depolymerizing factor 2 OS=Arabidopsis thali... [more]
ADF_BRANA1.395e-1970.00Actin-depolymerizing factor (Fragment) OS=Brassica... [more]
ADF7_ARATH1.395e-1970.00Actin-depolymerizing factor 7 OS=Arabidopsis thali... [more]
ADF2_MAIZE1.822e-1970.49Actin-depolymerizing factor 2 OS=Zea mays GN=ADF2 ... [more]
ADF5_ARATH2.380e-1971.67Actin-depolymerizing factor 5 OS=Arabidopsis thali... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0001_IIIaR_F08 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0001_IIIaR_F08 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304427 ID=CB304427; Name=CB304427; organism=Citrus sinensis; type=EST; length=449bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGAATACCCAACAAACAAACT
TATATTCATCAGAGTAGCAATAAACCACTGGGAAGCTAAATTCACCACAA
CAAGATAACCTCAGCCCAATCAGTCTTCCCACATTGCCAGTTATTCGAAG
ATTACGCATAGATTTTTGCACATAGATTAATGAAGCAAGGAGCAACAGTT
GGCAGAACCCCTTGCTGATTTTTTTTTCATGGAAGGAAGAAACTGCAAAA
CTGCAGACTCTTCAGCTTGCACGGTTTCTAAGCTCTTCAAGATCCATCTC
TGTAGGATCAGTAGCCTGAATCTCATAGTGGATACCATCCAGCTCCCGTC
GAAATCTGTCTTTAGATGTGGCGTACAGCATCTTGGCACGGATTCTAGAG
GTTGAAGGGGACCATGCAATGAAGAATATCTTGCTCTTCTGACAATTCT
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