CB304427

Overview
NameCB304427
Unique NameCB304427
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length449
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8456 contig Csv1_Contig8456:235..684. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304427 vs. ExPASy Swiss-Prot
Match: ADF2_PETHY (Actin-depolymerizing factor 2 OS=Petunia hybrida GN=ADF2 PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 2.380e-19
Identity = 43/60 (71.67%), Postives = 53/60 (88.33%), Query Frame = -3
Query:  268 NCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQATDPTEMDLEELRNRA 447
            N QKS+IFFIAWSP T+R+R+KM+YA+SKDRF+RELDGI  E+QATDPTEM L+  R+RA
Sbjct:   79 NHQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQATDPTEMGLDVFRSRA 138          
BLAST of CB304427 vs. ExPASy Swiss-Prot
Match: ADF1_PETHY (Actin-depolymerizing factor 1 OS=Petunia hybrida GN=ADF1 PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 2.380e-19
Identity = 41/61 (67.21%), Postives = 54/61 (88.52%), Query Frame = -3
Query:  265 NCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQATDPTEMDLEELRNRAS 447
            NCQKS+IFFIAW P T+R+R+KM+YA+SKDRF+RELDGI  E+QA DPTEM L+ +++RA+
Sbjct:   79 NCQKSRIFFIAWCPDTARVRSKMIYASSKDRFKRELDGIQVELQACDPTEMGLDVIQSRAN 139          
BLAST of CB304427 vs. ExPASy Swiss-Prot
Match: ADF5_ORYSJ (Actin-depolymerizing factor 5 OS=Oryza sativa subsp. japonica GN=ADF5 PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 5.302e-19
Identity = 43/60 (71.67%), Postives = 50/60 (83.33%), Query Frame = -3
Query:  268 NCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQATDPTEMDLEELRNRA 447
            NCQKSKIFFIAWSP+ SRIRAK+LYATSK   RR LDG+HYE+QATD +EM  + +R RA
Sbjct:   83 NCQKSKIFFIAWSPTASRIRAKILYATSKQGLRRVLDGVHYEVQATDSSEMGYDVIRGRA 142          
BLAST of CB304427 vs. ExPASy Swiss-Prot
Match: ADF12_ARATH (Actin-depolymerizing factor 12 OS=Arabidopsis thaliana GN=ADF12 PE=2 SV=2)

HSP 1 Score: 92.8189 bits (229), Expect = 6.924e-19
Identity = 42/60 (70.00%), Postives = 53/60 (88.33%), Query Frame = -3
Query:  268 NCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQATDPTEMDLEELRNRA 447
            N QKSKIFFIAWSP +SR+R KM+YA+SKDRF+RELDGI  E+QATDP+EM L+ +++RA
Sbjct:   77 NIQKSKIFFIAWSPDSSRVRMKMVYASSKDRFKRELDGIQVELQATDPSEMSLDIIKSRA 136          
BLAST of CB304427 vs. ExPASy Swiss-Prot
Match: ADF8_ORYSJ (Putative actin-depolymerizing factor 8 OS=Oryza sativa subsp. japonica GN=ADF8 PE=3 SV=2)

HSP 1 Score: 92.4337 bits (228), Expect = 9.043e-19
Identity = 42/61 (68.85%), Postives = 52/61 (85.25%), Query Frame = -3
Query:  265 NCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQATDPTEMDLEELRNRAS 447
            NC+KSKIFFI+WSPS S IRAK +YA  +++FR ELDG+H+EIQATDP +MDLE LR RA+
Sbjct:   84 NCRKSKIFFISWSPSLSCIRAKTIYAVWRNQFRHELDGVHFEIQATDPDDMDLEVLRGRAN 144          
BLAST of CB304427 vs. ExPASy Swiss-Prot
Match: ADF3_ARATH (Actin-depolymerizing factor 3 OS=Arabidopsis thaliana GN=ADF3 PE=1 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 1.543e-18
Identity = 39/58 (67.24%), Postives = 53/58 (91.38%), Query Frame = -3
Query:  265 KSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQATDPTEMDLEELRNRAS 438
            +S+IFF+AWSP T+R+R+KM+YA+SKDRF+RELDGI  E+QATDPTEMDL+  ++RA+
Sbjct:   82 RSRIFFVAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQATDPTEMDLDVFKSRAN 139          
BLAST of CB304427 vs. ExPASy Swiss-Prot
Match: ADF9_ARATH (Actin-depolymerizing factor 9 OS=Arabidopsis thaliana GN=ADF9 PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 2.631e-18
Identity = 40/60 (66.67%), Postives = 49/60 (81.67%), Query Frame = -3
Query:  268 NCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQATDPTEMDLEELRNRA 447
            NC+ SKIFFI WSP  SRIR KM+YATSK   RR LDG+HYE+QATDPTEM  +++++RA
Sbjct:   70 NCRMSKIFFITWSPEASRIREKMMYATSKSGLRRVLDGVHYELQATDPTEMGFDKIQDRA 129          
BLAST of CB304427 vs. ExPASy Swiss-Prot
Match: ADF3_MAIZE (Actin-depolymerizing factor 3 OS=Zea mays GN=ADF3 PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 7.415e-13
Identity = 30/58 (51.72%), Postives = 49/58 (84.48%), Query Frame = -3
Query:  268 QKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQATDPTEMDLEELRNRA 441
            QKS+IF+I WSPS++++++KMLYA+S  +F+  L+GI  E+QATD +E+ L+E+++RA
Sbjct:   81 QKSRIFYILWSPSSAKVKSKMLYASSNQKFKSGLNGIQVELQATDASEISLDEIKDRA 138          
BLAST of CB304427 vs. ExPASy Swiss-Prot
Match: ADF11_ARATH (Putative actin-depolymerizing factor 11 OS=Arabidopsis thaliana GN=ADF11 PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 7.415e-13
Identity = 32/54 (59.26%), Postives = 44/54 (81.48%), Query Frame = -3
Query:  271 KIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQATDPTEMDLEELRNR 432
            KI FIAWSPST+++R KM+Y+++KDRF+RELDGI  E  ATD T++ L+ +R R
Sbjct:   78 KICFIAWSPSTAKMRKKMIYSSTKDRFKRELDGIQVEFHATDLTDISLDAIRRR 131          
BLAST of CB304427 vs. ExPASy Swiss-Prot
Match: ADF4_ORYSJ (Actin-depolymerizing factor 4 OS=Oryza sativa subsp. japonica GN=ADF4 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.265e-12
Identity = 30/56 (53.57%), Postives = 46/56 (82.14%), Query Frame = -3
Query:  271 KSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQATDPTEMDLEELRNR 438
            KS+IF+I WSP  +++R+KMLYA+S +RF++EL+GI  E+QATD  E+ L+ L++R
Sbjct:   82 KSRIFYILWSPDNAKVRSKMLYASSNERFKKELNGIQLEVQATDAGEISLDALKDR 137          
The following BLAST results are available for this feature:
BLAST of CB304427 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
ADF2_PETHY2.380e-1971.67Actin-depolymerizing factor 2 OS=Petunia hybrida G... [more]
ADF1_PETHY2.380e-1967.21Actin-depolymerizing factor 1 OS=Petunia hybrida G... [more]
ADF5_ORYSJ5.302e-1971.67Actin-depolymerizing factor 5 OS=Oryza sativa subs... [more]
ADF12_ARATH6.924e-1970.00Actin-depolymerizing factor 12 OS=Arabidopsis thal... [more]
ADF8_ORYSJ9.043e-1968.85Putative actin-depolymerizing factor 8 OS=Oryza sa... [more]
ADF3_ARATH1.543e-1867.24Actin-depolymerizing factor 3 OS=Arabidopsis thali... [more]
ADF9_ARATH2.631e-1866.67Actin-depolymerizing factor 9 OS=Arabidopsis thali... [more]
ADF3_MAIZE7.415e-1351.72Actin-depolymerizing factor 3 OS=Zea mays GN=ADF3 ... [more]
ADF11_ARATH7.415e-1359.26Putative actin-depolymerizing factor 11 OS=Arabido... [more]
ADF4_ORYSJ1.265e-1253.57Actin-depolymerizing factor 4 OS=Oryza sativa subs... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0001_IIIaR_F08 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0001_IIIaR_F08 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304427 ID=CB304427; Name=CB304427; organism=Citrus sinensis; type=EST; length=449bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGAATACCCAACAAACAAACT
TATATTCATCAGAGTAGCAATAAACCACTGGGAAGCTAAATTCACCACAA
CAAGATAACCTCAGCCCAATCAGTCTTCCCACATTGCCAGTTATTCGAAG
ATTACGCATAGATTTTTGCACATAGATTAATGAAGCAAGGAGCAACAGTT
GGCAGAACCCCTTGCTGATTTTTTTTTCATGGAAGGAAGAAACTGCAAAA
CTGCAGACTCTTCAGCTTGCACGGTTTCTAAGCTCTTCAAGATCCATCTC
TGTAGGATCAGTAGCCTGAATCTCATAGTGGATACCATCCAGCTCCCGTC
GAAATCTGTCTTTAGATGTGGCGTACAGCATCTTGGCACGGATTCTAGAG
GTTGAAGGGGACCATGCAATGAAGAATATCTTGCTCTTCTGACAATTCT
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