CB304427

Overview
NameCB304427
Unique NameCB304427
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length449
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8456 contig Csv1_Contig8456:235..684. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CB304427 vs. ExPASy Swiss-Prot
Match: ADF3_ORYSJ (Actin-depolymerizing factor 3 OS=Oryza sativa subsp. japonica GN=ADF3 PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.265e-12
Identity = 28/58 (48.28%), Postives = 48/58 (82.76%), Query Frame = -3 
Query:  265 KSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQATDPTEMDLEELRNRAS 438
            +SKIFF++WSP+ + +R+KM+YA+S + F++ELDG+  ++QATDP+E+ L+ L++  S
Sbjct:   93 RSKIFFVSWSPAAADVRSKMVYASSNEGFKKELDGVQIDLQATDPSELTLDVLKDHTS 150
The following BLAST results are available for this feature:
BLAST of CB304427 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
ADF3_ORYSJ1.265e-1248.28Actin-depolymerizing factor 3 OS=Oryza sativa subs... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0001_IIIaR_F08 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0001_IIIaR_F08 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304427 ID=CB304427; Name=CB304427; organism=Citrus sinensis; type=EST; length=449bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGAATACCCAACAAACAAACT
TATATTCATCAGAGTAGCAATAAACCACTGGGAAGCTAAATTCACCACAA
CAAGATAACCTCAGCCCAATCAGTCTTCCCACATTGCCAGTTATTCGAAG
ATTACGCATAGATTTTTGCACATAGATTAATGAAGCAAGGAGCAACAGTT
GGCAGAACCCCTTGCTGATTTTTTTTTCATGGAAGGAAGAAACTGCAAAA
CTGCAGACTCTTCAGCTTGCACGGTTTCTAAGCTCTTCAAGATCCATCTC
TGTAGGATCAGTAGCCTGAATCTCATAGTGGATACCATCCAGCTCCCGTC
GAAATCTGTCTTTAGATGTGGCGTACAGCATCTTGGCACGGATTCTAGAG
GTTGAAGGGGACCATGCAATGAAGAATATCTTGCTCTTCTGACAATTCT
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