CB304429

Overview
NameCB304429
Unique NameCB304429
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length686
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10142 contig Csv1_Contig10142:254..939. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304429 vs. ExPASy Swiss-Prot
Match: GL112_ARATH (Putative germin-like protein subfamily 1 member 12 OS=Arabidopsis thaliana GN=At5g38960 PE=2 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 8.568e-45
Identity = 94/158 (59.49%), Postives = 114/158 (72.15%), Query Frame = -2
Query:  215 GLAKPGNT-ANRLGVDETDANVEQIPGLNTLGISAFRIDYAPYGQRPPHIHPRASEIFLVLEGTLYVGFVTSDQLNNTLIAKVLNKGDVFVFPQGLIHFQFNIGKTNAAAYSALNSQFPGEVTIADTVFGANPSINPDFLGKAFQLDPKIVKDLQNKF 685
            GL K   T ++ +G + T  NV QIPGLNTLGIS  RIDY   GQ PPH HPRA+EI LV EGTL+VGF +S    N L  K LNKGDVFVFP+GLIHFQ NIGK  A A+++L+SQ PG + I +T+FG+ P I+P+ L KAFQLDPK++  LQ KF
Sbjct:   66 GLDKARTTESSPVGSNVTTVNVNQIPGLNTLGISLVRIDYGINGQNPPHTHPRATEILLVQEGTLFVGFFSSFP-ENRLFNKTLNKGDVFVFPEGLIHFQVNIGKQPAVAFASLSSQNPGVIIIGNTLFGSKPPIDPNVLAKAFQLDPKVIIQLQKKF 222          
BLAST of CB304429 vs. ExPASy Swiss-Prot
Match: GL87_ORYSJ (Germin-like protein 8-7 OS=Oryza sativa subsp. japonica GN=GER6 PE=2 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 1.119e-44
Identity = 95/153 (62.09%), Postives = 113/153 (73.86%), Query Frame = -2
Query:  203 NRLGVDETDANVEQIPGLNTLGISAFRIDYAPYGQRPPHIHPRASEIFLVLEGTLYVGFVTSDQLNNTLIAKVLNKGDVFVFPQGLIHFQFNIGKTN-AAAYSALNSQFPGEVTIADTVFGANPSINPDFLGKAFQLDPKIVKDLQNKFINGN 658
            N++G + T  NV QIPGLNTLGIS  RIDYAP G+ PPH HPRA+EI  VLEGTLYVGFVTS+  NNTL +KVLNKGDVFVFP+GLIHFQFN      A A +AL+SQ PG +TIA+ VFG+ P I+ D L KAFQ++   +  LQ +F   N
Sbjct:   72 NKVGSNVTLINVMQIPGLNTLGISIARIDYAPLGENPPHTHPRATEILTVLEGTLYVGFVTSNP-NNTLFSKVLNKGDVFVFPEGLIHFQFNPNPHQPAVALAALSSQNPGAITIANAVFGSKPPISDDILAKAFQVEKGTIDWLQAQFWENN 223          
BLAST of CB304429 vs. ExPASy Swiss-Prot
Match: GL121_ORYSJ (Germin-like protein 12-1 OS=Oryza sativa subsp. japonica GN=Os12g0154700 PE=2 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 4.252e-44
Identity = 99/164 (60.37%), Postives = 115/164 (70.12%), Query Frame = -2
Query:  203 LAKPGNTA-NRLGVDETDANVEQIPGLNTLGISAFRIDYAPYGQRPPHIHPRASEIFLVLEGTLYVGFVTSDQLN--NTLIAKVLNKGDVFVFPQGLIHFQFNIGKTN-AAAYSALNSQFPGEVTIADTVFGANPSINPDFLGKAFQLDPKIVKDLQNKFINGN 682
            L KP +T  ++ G + T  NV ++ GLNTLGIS  RIDYAP GQ PPH HPRA+EI  V EGTLYVGFVTS+Q N  N L  K LNKGDVFVFPQGLIHFQFN      A A +AL+SQ PG +TIA+ VFG+NP I+ D L KAFQ+D K V  LQ +F   N
Sbjct:   64 LDKPMDTTKSKAGSNVTLINVMKLTGLNTLGISMARIDYAPKGQNPPHTHPRATEILTVFEGTLYVGFVTSNQANGENKLFTKTLNKGDVFVFPQGLIHFQFNPSYDKPAVAIAALSSQNPGAITIANAVFGSNPPISDDVLAKAFQVDKKAVDWLQAQFWENN 227          
BLAST of CB304429 vs. ExPASy Swiss-Prot
Match: GL88_ORYSJ (Germin-like protein 8-8 OS=Oryza sativa subsp. japonica GN=Os08g0189700 PE=2 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 9.473e-44
Identity = 94/153 (61.44%), Postives = 112/153 (73.20%), Query Frame = -2
Query:  203 NRLGVDETDANVEQIPGLNTLGISAFRIDYAPYGQRPPHIHPRASEIFLVLEGTLYVGFVTSDQLNNTLIAKVLNKGDVFVFPQGLIHFQFNIGKTN-AAAYSALNSQFPGEVTIADTVFGANPSINPDFLGKAFQLDPKIVKDLQNKFINGN 658
            N++G + T  NV QIPGLNTLGIS  RIDYAP G+ PPH HPRA+EI  VLEGTLYVGFVTS+  NNTL +KVLNKGDVFVFP+GLIHFQFN      A A +AL+SQ PG +TIA+ VFG+ P I+   L KAFQ++   +  LQ +F   N
Sbjct:   71 NKVGSNVTLINVMQIPGLNTLGISIARIDYAPLGENPPHTHPRATEILTVLEGTLYVGFVTSNP-NNTLFSKVLNKGDVFVFPEGLIHFQFNPNPHQPAVAIAALSSQNPGAITIANAVFGSKPPISDKVLAKAFQVEKGTIDWLQAQFWENN 222          
BLAST of CB304429 vs. ExPASy Swiss-Prot
Match: GL16_ARATH (Germin-like protein subfamily 1 member 6 OS=Arabidopsis thaliana GN=At3g04200 PE=2 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 1.237e-43
Identity = 90/157 (57.32%), Postives = 111/157 (70.70%), Query Frame = -2
Query:  215 GLAKPGNTANRLGVDETDANVEQIPGLNTLGISAFRIDYAPYGQRPPHIHPRASEIFLVLEGTLYVGFVTSDQLNNTLIAKVLNKGDVFVFPQGLIHFQFNIGKTNAAAYSALNSQFPGEVTIADTVFGANPSINPDFLGKAFQLDPKIVKDLQNKF 685
            GL    NT N LG + T  +V +IPGLNTLG+S  R+D+A  GQ PPHIHPRA+EI +V +G L VGFV+S+Q NN L  KVL +GDVFVFP GLIHFQ N+ +T A A++   SQ PG + IAD VFG+NPSI  + L KAFQLD K+V+ L   F
Sbjct:   66 GLNIARNTTNFLGSNVTTVDVNKIPGLNTLGVSLARLDFAQGGQNPPHIHPRATEILVVTKGKLLVGFVSSNQDNNRLFYKVLKRGDVFVFPIGLIHFQMNVRRTRAVAFAGFGSQNPGTIRIADAVFGSNPSIPQEVLAKAFQLDVKLVRFLHIVF 222          
BLAST of CB304429 vs. ExPASy Swiss-Prot
Match: GL122_ORYSJ (Germin-like protein 12-2 OS=Oryza sativa subsp. japonica GN=Os12g0154800 PE=2 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 1.237e-43
Identity = 99/164 (60.37%), Postives = 115/164 (70.12%), Query Frame = -2
Query:  203 LAKPGNTA-NRLGVDETDANVEQIPGLNTLGISAFRIDYAPYGQRPPHIHPRASEIFLVLEGTLYVGFVTSDQLN--NTLIAKVLNKGDVFVFPQGLIHFQFNIGKTN-AAAYSALNSQFPGEVTIADTVFGANPSINPDFLGKAFQLDPKIVKDLQNKFINGN 682
            L KP +T  ++ G + T  NV ++ GLNTLGIS  RIDYAP GQ PPH HPRA+EI  VLEGTLYVGFVTS+Q N  N L  K LNKGDVFVFPQGLIHFQFN      A A +AL+SQ PG +TIA+ VFG+N  I+ D L KAFQ+D K V  LQ +F   N
Sbjct:   64 LDKPMDTTKSKAGSNVTLINVMKLAGLNTLGISMARIDYAPKGQNPPHTHPRATEILTVLEGTLYVGFVTSNQANGENKLFTKTLNKGDVFVFPQGLIHFQFNPSYDKPAVAIAALSSQNPGAITIANAVFGSNSPISDDVLAKAFQVDKKAVDWLQAQFWENN 227          
BLAST of CB304429 vs. ExPASy Swiss-Prot
Match: GL812_ORYSJ (Germin-like protein 8-12 OS=Oryza sativa subsp. japonica GN=Os08g0231400 PE=2 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 1.616e-43
Identity = 92/158 (58.23%), Postives = 114/158 (72.15%), Query Frame = -2
Query:  203 PGNTANRLGVDETDANVEQIPGLNTLGISAFRIDYAPYGQRPPHIHPRASEIFLVLEGTLYVGFVTSDQLNNTLIAKVLNKGDVFVFPQGLIHFQFNIGKTN-AAAYSALNSQFPGEVTIADTVFGANPSINPDFLGKAFQLDPKIVKDLQNKFINGN 673
            P NT N+LG + T+ NV + PGLNTLGIS  RIDYAP G  PPHIHPRA+E+  VLEGTLYVGFVTS+   N L +KV+ KGDVFVFP+ +IHFQ N+     A A SAL+SQ PG +TIA  VFG+ P I+ D L KAFQ++ K++  LQ++F   N
Sbjct:   68 PRNTFNKLGSNVTNLNVMEFPGLNTLGISLARIDYAPMGVNPPHIHPRATELLTVLEGTLYVGFVTSNP--NKLFSKVVCKGDVFVFPKAMIHFQMNLDHDKPAVAQSALSSQNPGVITIASAVFGSQPPISDDVLTKAFQVEKKLIDWLQSQFWENN 223          
BLAST of CB304429 vs. ExPASy Swiss-Prot
Match: GL810_ORYSJ (Germin-like protein 8-10 OS=Oryza sativa subsp. japonica GN=GLP2 PE=2 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 1.616e-43
Identity = 94/153 (61.44%), Postives = 112/153 (73.20%), Query Frame = -2
Query:  203 NRLGVDETDANVEQIPGLNTLGISAFRIDYAPYGQRPPHIHPRASEIFLVLEGTLYVGFVTSDQLNNTLIAKVLNKGDVFVFPQGLIHFQFNIGKTN-AAAYSALNSQFPGEVTIADTVFGANPSINPDFLGKAFQLDPKIVKDLQNKFINGN 658
            N++G + T  NV QIPGLNTLGIS  RIDYAP G+ PPH HPRA+EI  VLEGTLYVGFVTS+  NNTL +KVLNKGDVFVFP+GLIHFQFN      A A +AL+SQ PG +TIA+ VFG+ P I+   L KAFQ++   +  LQ +F   N
Sbjct:   71 NKVGSNVTLINVMQIPGLNTLGISIARIDYAPLGENPPHTHPRATEILTVLEGTLYVGFVTSNP-NNTLFSKVLNKGDVFVFPEGLIHFQFNPNPHQPAVAIAALSSQNPGAITIANAVFGSKPPISDIVLAKAFQVEKGTIDWLQAQFWENN 222          
BLAST of CB304429 vs. ExPASy Swiss-Prot
Match: GL123_ORYSJ (Putative germin-like protein 12-3 OS=Oryza sativa subsp. japonica GN=Os12g0154900 PE=3 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 2.110e-43
Identity = 95/157 (60.51%), Postives = 112/157 (71.34%), Query Frame = -2
Query:  203 TANRLGVDETDANVEQIPGLNTLGISAFRIDYAPYGQRPPHIHPRASEIFLVLEGTLYVGFVTSDQLN--NTLIAKVLNKGDVFVFPQGLIHFQFNIGKTN-AAAYSALNSQFPGEVTIADTVFGANPSINPDFLGKAFQLDPKIVKDLQNKFINGN 664
            T ++ G + T  NV ++ GLNTLGIS  RIDYAP GQ PPH HPRA+EI  V+EG+LYVGFVTS+Q N  N L  K LNKGDVFVFP+GLIHFQFN      AAA  AL+SQ PG +TIA+ VFG+NP I+ D L KAFQ+D K V  LQ +F   N
Sbjct:   71 TKSKAGSNVTLINVMKLAGLNTLGISMARIDYAPKGQNPPHTHPRATEILSVIEGSLYVGFVTSNQANGENKLFTKTLNKGDVFVFPEGLIHFQFNPSYDKPAAAIVALSSQNPGAITIANAVFGSNPPISDDVLAKAFQVDKKAVDWLQAQFWENN 227          
BLAST of CB304429 vs. ExPASy Swiss-Prot
Match: GL86_ORYSJ (Germin-like protein 8-6 OS=Oryza sativa subsp. japonica GN=Os08g0189500 PE=2 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 2.756e-43
Identity = 94/153 (61.44%), Postives = 111/153 (72.55%), Query Frame = -2
Query:  203 NRLGVDETDANVEQIPGLNTLGISAFRIDYAPYGQRPPHIHPRASEIFLVLEGTLYVGFVTSDQLNNTLIAKVLNKGDVFVFPQGLIHFQFNIGKTN-AAAYSALNSQFPGEVTIADTVFGANPSINPDFLGKAFQLDPKIVKDLQNKFINGN 658
            N++G + T  NV QIPGLNTLGIS  RIDYAP GQ PPH HPRA+EI  VLEGTLYVGFVTS+  NNTL +KVL KGDVFVFP GLIHFQFN      A A +AL+SQ PG +TIA+ VFG+ P I+ + L KAFQ++   +  LQ +F   N
Sbjct:   72 NKVGSNVTLINVMQIPGLNTLGISIARIDYAPLGQNPPHTHPRATEILTVLEGTLYVGFVTSNP-NNTLFSKVLKKGDVFVFPVGLIHFQFNPNPHQPAVAIAALSSQNPGAITIANAVFGSKPPISDEVLAKAFQVEKGTIDWLQAQFWENN 223          
The following BLAST results are available for this feature:
BLAST of CB304429 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 87
Match NameE-valueIdentityDescription
GL112_ARATH8.568e-4559.49Putative germin-like protein subfamily 1 member 12... [more]
GL87_ORYSJ1.119e-4462.09Germin-like protein 8-7 OS=Oryza sativa subsp. jap... [more]
GL121_ORYSJ4.252e-4460.37Germin-like protein 12-1 OS=Oryza sativa subsp. ja... [more]
GL88_ORYSJ9.473e-4461.44Germin-like protein 8-8 OS=Oryza sativa subsp. jap... [more]
GL16_ARATH1.237e-4357.32Germin-like protein subfamily 1 member 6 OS=Arabid... [more]
GL122_ORYSJ1.237e-4360.37Germin-like protein 12-2 OS=Oryza sativa subsp. ja... [more]
GL812_ORYSJ1.616e-4358.23Germin-like protein 8-12 OS=Oryza sativa subsp. ja... [more]
GL810_ORYSJ1.616e-4361.44Germin-like protein 8-10 OS=Oryza sativa subsp. ja... [more]
GL123_ORYSJ2.110e-4360.51Putative germin-like protein 12-3 OS=Oryza sativa ... [more]
GL86_ORYSJ2.756e-4361.44Germin-like protein 8-6 OS=Oryza sativa subsp. jap... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionFLAVEDO0001_IIIaR_F11 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0001_IIIaR_F11 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304429 ID=CB304429; Name=CB304429; organism=Citrus sinensis; type=EST; length=686bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTATAAATAAAAACAATAACAAT
TATGTTTATTACATGGCCACAGTCAGCCTGGAGAGAGGTTCATGAGAGAC
CTCTTTTATTACATTAATTAAGATATGATAATCTGGAGATAAAGTAATAC
AGCCACTAGTGAAGAGGCCATTTATATTAAAGCTCATTAATTCCTTCTCC
TAATTGCCATTAATGAACTTATTTTGAAGATCTTTCACTATCTTTGGGTC
CAACTGGAATGCCTTGCCAAGAAAATCGGGATTGATTGAAGGATTGGCTC
CAAAGACTGTGTCGGCTATGGTAACTTCACCCGGGAATTGGCTGTTTAGA
GCAGAATAGGCAGCTGCATTTGTTTTTCCAATGTTGAATTGGAAGTGAAT
CAAACCTTGTGGAAACACAAAAACATCTCCCTTATTTAGAACTTTTGCGA
TGAGTGTGTTATTCAGTTGGTCTGATGTCACAAAACCGACATAAAGAGTT
CCTTCCAGGACTAAGAAGATTTCGCTGGCACGGGGGTGAATGTGAGGTGG
CCTTTGGCCATATGGTGCATAGTCAATACGGAATGCTGATATGCCAAGGG
TGTTGAGTCCTGGAATTTGCTCAACATTTGCATCTGTTTCATCAACACCA
AGTCGATTTGCTGTGTTTCCAGGCTTGGCTAGCCCT
back to top