CB304432

Overview
NameCB304432
Unique NameCB304432
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length582
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9540 contig Csv1_Contig9540:460..1041. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304432 vs. ExPASy Swiss-Prot
Match: CB24_SOLLC (Chlorophyll a-b binding protein 4, chloroplastic OS=Solanum lycopersicum GN=CAB4 PE=2 SV=1)

HSP 1 Score: 268.47 bits (685), Expect = 1.720e-71
Identity = 126/143 (88.11%), Postives = 135/143 (94.41%), Query Frame = -2
Query:  153 VKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYAPNFVPGK 581
            VKFGEAVWFKAG+QIFSEGGLDYLGNP+L+HAQSILAIWACQVVLMG VEGYR+ GGPLGE  D +YPGG+FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP+ENL+DH+ DPV NNAWAYA NFVPGK
Sbjct:  123 VKFGEAVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAIWACQVVLMGFVEGYRVGGGPLGEGLDKIYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLSDHINDPVANNAWAYATNFVPGK 265          
BLAST of CB304432 vs. ExPASy Swiss-Prot
Match: CB22_ARATH (Chlorophyll a-b binding protein 2, chloroplastic OS=Arabidopsis thaliana GN=CAB2A PE=1 SV=1)

HSP 1 Score: 268.085 bits (684), Expect = 2.247e-71
Identity = 129/144 (89.58%), Postives = 137/144 (95.14%), Query Frame = -2
Query:  153 VKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAG-GPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYAPNFVPGK 581
            VKFGEAVWFKAG+QIFS+GGLDYLGNPSL+HAQSILAIWA QV+LMGAVEGYR+AG GPLGE  D LYPGGSFDPLGLA DPEAFAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+ENLADHLADPVNNNAWA+A NFVPGK
Sbjct:  124 VKFGEAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGNGPLGEAEDLLYPGGSFDPLGLATDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNNAWAFATNFVPGK 267          
BLAST of CB304432 vs. ExPASy Swiss-Prot
Match: CB21_ARATH (Chlorophyll a-b binding protein 165/180, chloroplastic OS=Arabidopsis thaliana GN=LHCP-A PE=1 SV=1)

HSP 1 Score: 268.085 bits (684), Expect = 2.247e-71
Identity = 129/144 (89.58%), Postives = 137/144 (95.14%), Query Frame = -2
Query:  153 VKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAG-GPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYAPNFVPGK 581
            VKFGEAVWFKAG+QIFS+GGLDYLGNPSL+HAQSILAIWA QV+LMGAVEGYR+AG GPLGE  D LYPGGSFDPLGLA DPEAFAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+ENLADHLADPVNNNAWA+A NFVPGK
Sbjct:  124 VKFGEAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGNGPLGEAEDLLYPGGSFDPLGLATDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNNAWAFATNFVPGK 267          
BLAST of CB304432 vs. ExPASy Swiss-Prot
Match: CB48_MAIZE (Chlorophyll a-b binding protein 48, chloroplastic OS=Zea mays GN=CAB48 PE=3 SV=1)

HSP 1 Score: 266.159 bits (679), Expect = 8.537e-71
Identity = 127/143 (88.81%), Postives = 132/143 (92.31%), Query Frame = -2
Query:  153 VKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYAPNFVPGK 581
            VKFGE VWFKAG+QIFSEGGL + GNPSL+HAQSILAIWACQVVLMGAVEGY +AGG LGEV DPLY GGSFDPLGL DDPE FAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP+ENLADHL DPVNNNAWAYA NFVPGK
Sbjct:  122 VKFGEGVWFKAGSQIFSEGGLSHPGNPSLVHAQSILAIWACQVVLMGAVEGYHVAGGRLGEVVDPLYLGGSFDPLGLGDDPERFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLTDPVNNNAWAYATNFVPGK 264          
BLAST of CB304432 vs. ExPASy Swiss-Prot
Match: CB23_TOBAC (Chlorophyll a-b binding protein 36, chloroplastic OS=Nicotiana tabacum GN=CAB36 PE=3 SV=1)

HSP 1 Score: 265.388 bits (677), Expect = 1.456e-70
Identity = 125/143 (87.41%), Postives = 134/143 (93.71%), Query Frame = -2
Query:  153 VKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYAPNFVPGK 581
            VKFGEAVWFKAG+QIFSEGGLDYLGNP+LIHAQSILA+WA QVVLMG +EGYR+ GGPLGE  D +YPGG+FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP+ENL DH+ADPV NNAWAYA NFVPGK
Sbjct:  123 VKFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAVWASQVVLMGLIEGYRVGGGPLGEGLDKIYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHVADPVANNAWAYATNFVPGK 265          
BLAST of CB304432 vs. ExPASy Swiss-Prot
Match: CB25_SOLLC (Chlorophyll a-b binding protein 5, chloroplastic (Fragment) OS=Solanum lycopersicum GN=CAB5 PE=2 SV=1)

HSP 1 Score: 265.003 bits (676), Expect = 1.902e-70
Identity = 126/143 (88.11%), Postives = 134/143 (93.71%), Query Frame = -2
Query:  153 VKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYAPNFVPGK 581
            V FGEAVWFKAG+QIFSEGGLDYLGNP+LIHAQSILAIWA QVVLMG VEGYR+ GGPLGE  D +YPGG+FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP+ENL+DH+ADPV NNAWAYA NFVPGK
Sbjct:   95 VTFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWASQVVLMGFVEGYRVGGGPLGEGLDKIYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLSDHIADPVANNAWAYATNFVPGK 237          
BLAST of CB304432 vs. ExPASy Swiss-Prot
Match: CB21_PINTH (Chlorophyll a-b binding protein type I, chloroplastic OS=Pinus thunbergii PE=2 SV=1)

HSP 1 Score: 263.462 bits (672), Expect = 5.534e-70
Identity = 126/143 (88.11%), Postives = 132/143 (92.31%), Query Frame = -2
Query:  153 VKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYAPNFVPGK 581
            +KFGEAVWFKAGAQIFSEGGLDY GNP+LIHAQSILAIWACQVVLMG +EGYR+ GG LGE  DPL PGG+FDPLGLADDPEA AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP+ENL DHLADPV NNAWAYA NFVPGK
Sbjct:  124 LKFGEAVWFKAGAQIFSEGGLDYAGNPNLIHAQSILAIWACQVVLMGLIEGYRVGGGTLGEGLDPLLPGGAFDPLGLADDPEACAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHLADPVANNAWAYATNFVPGK 266          
BLAST of CB304432 vs. ExPASy Swiss-Prot
Match: CB23_ORYSJ (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. japonica GN=RCABP89 PE=2 SV=1)

HSP 1 Score: 262.692 bits (670), Expect = 9.439e-70
Identity = 124/143 (86.71%), Postives = 133/143 (93.01%), Query Frame = -2
Query:  153 VKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYAPNFVPGK 581
            VKFGEAVWFKAGAQIFSEGGLDYLGNP+L+HAQSILAIWA QVVLMG VEGYR+ GGPLGE  D +YPGG+FDPLGLADDP+ FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+ENL DH+ADPV NNAWAYA NFVPGK
Sbjct:  121 VKFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWAVQVVLMGFVEGYRVGGGPLGEGLDKVYPGGAFDPLGLADDPDTFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHVADPVANNAWAYATNFVPGK 263          
BLAST of CB304432 vs. ExPASy Swiss-Prot
Match: CB23_ORYSI (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. indica GN=OsI_012078 PE=2 SV=1)

HSP 1 Score: 262.692 bits (670), Expect = 9.439e-70
Identity = 124/143 (86.71%), Postives = 133/143 (93.01%), Query Frame = -2
Query:  153 VKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYAPNFVPGK 581
            VKFGEAVWFKAGAQIFSEGGLDYLGNP+L+HAQSILAIWA QVVLMG VEGYR+ GGPLGE  D +YPGG+FDPLGLADDP+ FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+ENL DH+ADPV NNAWAYA NFVPGK
Sbjct:  121 VKFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWAVQVVLMGFVEGYRVGGGPLGEGLDKVYPGGAFDPLGLADDPDTFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHVADPVANNAWAYATNFVPGK 263          
BLAST of CB304432 vs. ExPASy Swiss-Prot
Match: CB26_PETSP (Chlorophyll a-b binding protein 37, chloroplastic OS=Petunia sp. GN=CAB37 PE=3 SV=1)

HSP 1 Score: 262.307 bits (669), Expect = 1.233e-69
Identity = 125/143 (87.41%), Postives = 133/143 (93.01%), Query Frame = -2
Query:  153 VKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYAPNFVPGK 581
            V FGEAVWFKAG+QIFSEGGLDYLGNP+LIHAQSILAIWA QVVLMG VEGYR+ GGPLGE  D +YPGG+FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP+ENL DH+ADPV NNAWA+A NFVPGK
Sbjct:  123 VTFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWAAQVVLMGFVEGYRVGGGPLGEGLDKIYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHVADPVANNAWAFATNFVPGK 265          
The following BLAST results are available for this feature:
BLAST of CB304432 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 79
Match NameE-valueIdentityDescription
CB24_SOLLC1.720e-7188.11Chlorophyll a-b binding protein 4, chloroplastic O... [more]
CB22_ARATH2.247e-7189.58Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB21_ARATH2.247e-7189.58Chlorophyll a-b binding protein 165/180, chloropla... [more]
CB48_MAIZE8.537e-7188.81Chlorophyll a-b binding protein 48, chloroplastic ... [more]
CB23_TOBAC1.456e-7087.41Chlorophyll a-b binding protein 36, chloroplastic ... [more]
CB25_SOLLC1.902e-7088.11Chlorophyll a-b binding protein 5, chloroplastic (... [more]
CB21_PINTH5.534e-7088.11Chlorophyll a-b binding protein type I, chloroplas... [more]
CB23_ORYSJ9.439e-7086.71Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB23_ORYSI9.439e-7086.71Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB26_PETSP1.233e-6987.41Chlorophyll a-b binding protein 37, chloroplastic ... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0001_IIIaR_G05 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0001_IIIaR_G05 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304432 ID=CB304432; Name=CB304432; organism=Citrus sinensis; type=EST; length=582bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAGTCAAATTGAAGCATTTT
ATAAATAATCACAACTCAAATTAAAGCTTCCATGAGCTCACAACAGATTT
ACATGATATCCAAGAAACCGAAAAGAGAAAAACTCTTATCAACCGAAGCT
CACTTTCCGGGGACAAAGTTGGGGGCGTAGGCCCAGGCATTGTTATTGAC
AGGGTCAGCCAAGTGGTCGGCCAAGTTCTCTAACGGTCCCTTGCCGGTGA
CAATGGCCTGAACGAAGAAACCAAACATGGAGAACATAGCCAACCTTCCA
TTCTTGATTTCCTTAACCTTGAGCTCAGCAAAAGCCTCCGGGTCATCAGC
CAAACCCAATGGATCAAAGCTGCCACCTGGGTACAATGGGTCAGTCACTT
CACCGAGCGGCCCTCCAGCAATTCTGTAACCCTCAACGGCTCCCATCAAG
ACCACCTGGCAAGCCCAGATGGCCAAGATGCTCTGAGCGTGGATCAGGCT
TGGGTTCCCCAAGTAGTCAAGCCCGCCCTCGCTGAAGATCTGGGCCCCCG
CCTTGAACCACACGGCCTCACCGAACTTGACT
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