CB304435

Overview
NameCB304435
Unique NameCB304435
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length570
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2117 contig Csv1_Contig2117:159..728. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304435 vs. ExPASy Swiss-Prot
Match: RS15B_SCHPO (40S ribosomal protein S15-B OS=Schizosaccharomyces pombe GN=rps15b PE=1 SV=1)

HSP 1 Score: 185.267 bits (469), Expect = 1.876e-46
Identity = 89/137 (64.96%), Postives = 105/137 (76.64%), Query Frame = -1
Query:  160 KRTFKKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIXXXXXXXXXXXPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 570
            KRTF+ F++RGV+L+ LLD+S ++LV LF ARARRR  RGL       I             EKP  V+THLRNMII+PEM+GS++G+YNGK FNQVEI+PEMIGHYL EFSI+YKP KHGRPGIGATHSSRFIPLK
Sbjct:   18 KRTFRTFAYRGVELEQLLDLSAEQLVDLFHARARRRMLRGLGPNASRFIRKLRKAKSEAPLNEKPATVKTHLRNMIILPEMVGSVVGIYNGKLFNQVEIRPEMIGHYLGEFSITYKPTKHGRPGIGATHSSRFIPLK 154          
BLAST of CB304435 vs. ExPASy Swiss-Prot
Match: RS15A_SCHPO (40S ribosomal protein S15-A OS=Schizosaccharomyces pombe GN=rps15a PE=2 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 5.459e-46
Identity = 88/137 (64.23%), Postives = 105/137 (76.64%), Query Frame = -1
Query:  160 KRTFKKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIXXXXXXXXXXXPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 570
            KR+F+ F++RGV+L+ LLD+S ++LV LF ARARRR  RGL       I             EKP  V+THLRNMII+PEM+GS++G+YNGK FNQVEI+PEMIGHYL EFSI+YKP KHGRPGIGATHSSRFIPLK
Sbjct:   17 KRSFRTFAYRGVELEQLLDLSAEQLVDLFHARARRRMLRGLGPNASRFIRKLRKAKTEAPLNEKPATVKTHLRNMIILPEMVGSVVGIYNGKLFNQVEIRPEMIGHYLGEFSITYKPTKHGRPGIGATHSSRFIPLK 153          
BLAST of CB304435 vs. ExPASy Swiss-Prot
Match: RS15_YEAST (40S ribosomal protein S15 OS=Saccharomyces cerevisiae GN=RPS15 PE=1 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 8.157e-42
Identity = 83/137 (60.58%), Postives = 99/137 (72.26%), Query Frame = -1
Query:  160 KRTFKKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIXXXXXXXXXXXPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 570
            KR FK  S+RGVDL+ LL+MS ++ VKL  AR RRRF RG+  KP   +             EKP PVRTH+RNMIIVPEMIGS++G+YNGK FNQVEI+PEM+GHYL EFSI+Y PV+HGR G     +SRFIPLK
Sbjct:    9 KRVFKTHSYRGVDLEKLLEMSTEDFVKLAPARVRRRFARGMTSKPAGFMKKLRAAKLAAPENEKPAPVRTHMRNMIIVPEMIGSVVGIYNGKAFNQVEIRPEMLGHYLGEFSITYTPVRHGRAG---ATTSRFIPLK 142          
BLAST of CB304435 vs. ExPASy Swiss-Prot
Match: RS15_DICDI (40S ribosomal protein S15 OS=Dictyostelium discoideum GN=rps15 PE=3 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 3.100e-41
Identity = 82/138 (59.42%), Postives = 101/138 (73.19%), Query Frame = -1
Query:  160 KRTFKKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIXXXXXXXXXXXP-GEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 570
            KRTFKKF++ GV L++LLD+  ++L+ L   RARR+ +R    K +  +             GEKP  V+TH RN++IVPEMIGS+IG+YNGK FNQVE+KPEMIGHY  EFS+SYK V HGRPGIGATHSSRFIPLK
Sbjct:    7 KRTFKKFTYSGVALESLLDLKEEQLISLLRCRARRKLRRETPIKHVNFLKKCRASKAAVTQVGEKPALVKTHARNILIVPEMIGSVIGIYNGKVFNQVEVKPEMIGHYTGEFSLSYKSVNHGRPGIGATHSSRFIPLK 144          
BLAST of CB304435 vs. ExPASy Swiss-Prot
Match: RS156_ARATH (40S ribosomal protein S15-6 OS=Arabidopsis thaliana GN=RPS15F PE=2 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 5.846e-40
Identity = 87/143 (60.84%), Postives = 104/143 (72.73%), Query Frame = -1
Query:  160 KRTFKKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIXXXXXXXXXXXPGEK--PEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGA----THSSRFIPLK 570
            KRTFKKFSFRG ++DALL MSN +L KLF+AR RRRF RGLK++P+ LI              K  PE V+THLRNMIIVPEMIGS++GV+NGK FN++ IKPEMIGHYLAEFS++ K V H RP I        S+RFIPL+
Sbjct:   18 KRTFKKFSFRGFNVDALLKMSNVDLAKLFNARVRRRFYRGLKKQPLILIKKLRRAKKEASDENKMKPEVVKTHLRNMIIVPEMIGSVVGVHNGKKFNEIVIKPEMIGHYLAEFSMTCKKVNHHRPRICGCCCFRRSTRFIPLR 160          
BLAST of CB304435 vs. ExPASy Swiss-Prot
Match: RS15_NAEGR (40S ribosomal protein S15 (Fragment) OS=Naegleria gruberi GN=RPS15 PE=2 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 5.484e-30
Identity = 63/118 (53.39%), Postives = 82/118 (69.49%), Query Frame = -1
Query:  160 MSNDELVKLFSARARRRFQRGLKRKPMALIXXXXXXXXXXXPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 513
            M NDEL  LF++  RR   +G+ +K   LI            GEKP+ V+THLR+MII+P MIG +IGVY GK +  VEIKPEM+G  L++FS++Y+PVKHG+P IGAT SS F+PLK
Sbjct:    3 MENDELKNLFTSALRRIIGKGISKKYKTLIEKAQKKRDTAPYGEKPDAVKTHLRDMIILPSMIGCVIGVYQGKDYVSVEIKPEMVGMKLSDFSLTYRPVKHGKPSIGATSSSGFVPLK 120          
BLAST of CB304435 vs. ExPASy Swiss-Prot
Match: RS19_THEGJ (30S ribosomal protein S19P OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=rps19p PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 3.555e-29
Identity = 65/133 (48.87%), Postives = 88/133 (66.17%), Query Frame = -1
Query:  160 KKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIXXXXXXXXXXXPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 558
            K+F +RG  LD LL+MS +E  KL  AR RR  +RGL  +   L+            G+  +P+RTH R+MI++PEM+G  I V+NGK F  +EIKPEMIGHYL EF+++ K V+HG PG+GAT SS F+ +K
Sbjct:    5 KEFRYRGYTLDELLNMSLEEFAKLLPARQRRSLKRGLSPEQKKLLRKIRLAKK----GKYNKPIRTHSRDMIVLPEMVGITIHVHNGKEFVPIEIKPEMIGHYLGEFALTRKIVQHGSPGVGATRSSMFVAVK 133          
BLAST of CB304435 vs. ExPASy Swiss-Prot
Match: RS19_PYRFU (30S ribosomal protein S19P OS=Pyrococcus furiosus GN=rps19p PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 3.555e-29
Identity = 66/133 (49.62%), Postives = 89/133 (66.92%), Query Frame = -1
Query:  160 KKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIXXXXXXXXXXXPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 558
            K+F +RG  L+ L++MS +EL +LF AR RR  +RGL  +   L+            G+  +P+RTH R+MII+PEM+G  I V+NGK F  VEIKPEMIGHYL EF+ + K V+HG PG+GAT SS F+ +K
Sbjct:    4 KEFRYRGYTLEQLMNMSLEELARLFPARQRRSLKRGLTPEQKKLLRKIRLAKK----GKYKKPIRTHCRDMIILPEMVGLTIYVHNGKEFVPVEIKPEMIGHYLGEFAPTRKKVEHGAPGVGATRSSMFVAVK 132          
BLAST of CB304435 vs. ExPASy Swiss-Prot
Match: RS19_PYRKO (30S ribosomal protein S19P OS=Pyrococcus kodakaraensis GN=rps19p PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.034e-28
Identity = 65/133 (48.87%), Postives = 87/133 (65.41%), Query Frame = -1
Query:  160 KKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIXXXXXXXXXXXPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 558
            K+F +RG  LD LL+MS +E  KL  +R RR  +RGL  +   L+            G+  +P+RTH R+MI++PEM+G  I VYNGK F  VEIK EMIGHYL EF+++ K V+HG PG+GAT SS F+ +K
Sbjct:    5 KEFRYRGYTLDELLNMSLEEFAKLLPSRQRRSLKRGLSPEQKKLLRKIRLAKK----GKYNKPIRTHSRDMIVLPEMVGMTIHVYNGKEFVPVEIKEEMIGHYLGEFAMTRKVVQHGSPGVGATRSSMFVAVK 133          
BLAST of CB304435 vs. ExPASy Swiss-Prot
Match: RS19_PYRAB (30S ribosomal protein S19P OS=Pyrococcus abyssi GN=rps19p PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.351e-28
Identity = 66/133 (49.62%), Postives = 88/133 (66.17%), Query Frame = -1
Query:  160 KKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIXXXXXXXXXXXPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 558
            K+F +RG  L+ L++MS +EL KL  AR RR  +RGL  +   L+            G+  +P+RTH R+MI++PEM+G  I V+NGK F  VEIKPEMIGHYL EF+ + K V+HG PGIGAT SS F+ +K
Sbjct:    4 KEFRYRGYTLEQLMNMSLEELAKLLPARQRRSLKRGLTPEQKKLLRKIRLAKK----GKYNKPIRTHCRDMIVLPEMVGLTIYVHNGKEFVPVEIKPEMIGHYLGEFAPTRKRVQHGAPGIGATRSSMFVAVK 132          
The following BLAST results are available for this feature:
BLAST of CB304435 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
RS15B_SCHPO1.876e-4664.9640S ribosomal protein S15-B OS=Schizosaccharomyces... [more]
RS15A_SCHPO5.459e-4664.2340S ribosomal protein S15-A OS=Schizosaccharomyces... [more]
RS15_YEAST8.157e-4260.5840S ribosomal protein S15 OS=Saccharomyces cerevis... [more]
RS15_DICDI3.100e-4159.4240S ribosomal protein S15 OS=Dictyostelium discoid... [more]
RS156_ARATH5.846e-4060.8440S ribosomal protein S15-6 OS=Arabidopsis thalian... [more]
RS15_NAEGR5.484e-3053.3940S ribosomal protein S15 (Fragment) OS=Naegleria ... [more]
RS19_THEGJ3.555e-2948.8730S ribosomal protein S19P OS=Thermococcus gammato... [more]
RS19_PYRFU3.555e-2949.6230S ribosomal protein S19P OS=Pyrococcus furiosus ... [more]
RS19_PYRKO1.034e-2848.8730S ribosomal protein S19P OS=Pyrococcus kodakarae... [more]
RS19_PYRAB1.351e-2849.6230S ribosomal protein S19P OS=Pyrococcus abyssi GN... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0001_IIIaR_G10 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0001_IIIaR_G10 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304435 ID=CB304435; Name=CB304435; organism=Citrus sinensis; type=EST; length=570bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGATTAACAACTCAAACGCTA
GTATTTAGTCCAACAACCAAAAAAATGTAACCACAAAAAATTTGATCAAC
TTCAATGTTTTCTGAAAATAACAATAAGCTAAAATTCCAGATATCCAGCA
TACATCTCACTTAAGAGGAATGAACCTTGAGGAATGGGTAGCACCAATAC
CAGGTCTACCGTGCTTCACAGGCTTGTATGAGATAGAGAACTCAGCCAGG
TAATGCCCAATCATTTCCGGCTTAATTTCAACCTGATTAAAGGTCTTGCC
ATTGTACACTCCAATAATGCTTCCAATCATTTCAGGAACAATGATCATGT
TTCGCAAATGGGTGCGAACTGGTTCAGGCTTCTCACCAGGCGGAGCCTCC
CTTTTCGCCTTGCGAGGCTTCTTGATCAAAGCCATGGGCTTCCTCTTTAA
ACCCCTCTGAAACCTTCTGCGCGCACGTGCACTGAAGAGCTTGACGAGCT
CATCATTGGACATATCAAGAAGAGCGTCCAAATCCACGCCTCTGAAACTG
AACTTCTTGAACGTTCTCTT
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