CB304435

Overview
NameCB304435
Unique NameCB304435
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length570
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2117 contig Csv1_Contig2117:159..728. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304435 vs. ExPASy Swiss-Prot
Match: RS19_METJA (30S ribosomal protein S19P OS=Methanocaldococcus jannaschii GN=rps19p PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 1.764e-28
Identity = 61/132 (46.21%), Postives = 81/132 (61.36%), Query Frame = -1
Query:  160 KFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIXXXXXXXXXXXPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 555
            +F +RG  L+ L  M   E  KL  AR RR   RGL  +   L             G++P  +RTH R+ +I P+M+G   GVYNGK F +V++ PEMIGHYL EFS++ KPV+HG PG+GAT SS F+P+K
Sbjct:   21 EFRYRGYTLEELQQMPLREFAKLLPARQRRTLLRGLTPQQKKLAMKIKKARRLLNKGKEPRIIRTHCRDFVITPDMVGLTFGVYNGKEFVEVKVTPEMIGHYLGEFSLTRKPVQHGAPGMGATRSSMFVPIK 152          
BLAST of CB304435 vs. ExPASy Swiss-Prot
Match: RS19_PYRHO (30S ribosomal protein S19P OS=Pyrococcus horikoshii GN=rps19p PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 2.304e-28
Identity = 66/133 (49.62%), Postives = 88/133 (66.17%), Query Frame = -1
Query:  160 KKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIXXXXXXXXXXXPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 558
            K+F +RG  L+ L++MS +EL +L  AR RR  +RGL  +   L+            G+  +P+RTH R+MII+PEM+G  I V+NGK F  VEIKPEMIGHYL EF+ + K V+HG PGIGAT SS F+ +K
Sbjct:    4 KEFRYRGYTLEQLMNMSLEELARLLPARQRRSLRRGLTPEQKKLLRKIRLAKK----GKYNKPIRTHCRDMIILPEMVGLTIYVHNGKEFVPVEIKPEMIGHYLGEFAPTRKRVQHGAPGIGATRSSMFVAVK 132          
BLAST of CB304435 vs. ExPASy Swiss-Prot
Match: RS19_METKA (30S ribosomal protein S19P OS=Methanopyrus kandleri GN=rps19p PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 3.009e-28
Identity = 64/137 (46.72%), Postives = 88/137 (64.23%), Query Frame = -1
Query:  160 KRTFKKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIXXXXXXXXXXXPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 570
            ++ + +F +RG  L  L+ M  +E ++L  AR RR  +RGL  +   L+            G+KP  +RTH R+MII+PEM+G  I VYNGK F +V+I+PEMIGHYL EF+ + K V+HG  GIGAT SS F+PLK
Sbjct:   15 EKEWVEFRYRGYTLGELMKMPIEEFIELLPARQRRSLKRGLPSRHKKLLRKVRRARRLLRRGKKPPVIRTHCRDMIILPEMVGLTIAVYNGKEFKEVKIEPEMIGHYLGEFAKTRKTVEHG--GIGATRSSLFVPLK 149          
BLAST of CB304435 vs. ExPASy Swiss-Prot
Match: RS19_THEON (30S ribosomal protein S19P OS=Thermococcus onnurineus (strain NA1) GN=rps19p PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 6.704e-28
Identity = 63/133 (47.37%), Postives = 86/133 (64.66%), Query Frame = -1
Query:  160 KKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIXXXXXXXXXXXPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 558
            K+F +RG   + LL+MS ++  KL  AR RR  +RGL  +   L+            G+  +P+RTH R+M+I+PEM+G  I VYNGK F  VEIK EMIGHYL EF+++ K V+HG PG+GAT SS F+ +K
Sbjct:    5 KEFRYRGYTFEELLNMSLEDFAKLLPARQRRSLKRGLSPEQKKLLRKIRLAKK----GKYNKPIRTHSRDMVILPEMVGMTIHVYNGKEFVPVEIKEEMIGHYLGEFALTRKIVQHGSPGVGATRSSMFVAIK 133          
BLAST of CB304435 vs. ExPASy Swiss-Prot
Match: RS19_STAMF (30S ribosomal protein S19P OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=rps19p PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 1.951e-27
Identity = 67/134 (50.00%), Postives = 84/134 (62.69%), Query Frame = -1
Query:  160 FKKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIXXXXXXXXXXXPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 561
            +KKF +RG  L+ LL+M  DE + L  AR RR  +RGL    + L+            G+K   ++TH+R+MII+PEMIG  I VYNGK F  V I PEMIGHYL EFS + K V+HG PG+ AT SS FI LK
Sbjct:   11 WKKFRYRGKTLEELLNMPMDEFIGLLPARQRRSLKRGLTMAQVKLLAKIRKVRQKKLTGKKAI-IKTHVRDMIILPEMIGLTIAVYNGKEFIPVRIVPEMIGHYLGEFSPTTKRVQHGEPGLKATRSSMFISLK 143          
BLAST of CB304435 vs. ExPASy Swiss-Prot
Match: RS19_SULTO (30S ribosomal protein S19P OS=Sulfolobus tokodaii GN=rps19p PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 3.327e-27
Identity = 61/134 (45.52%), Postives = 85/134 (63.43%), Query Frame = -1
Query:  160 FKKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIXXXXXXXXXXXPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 561
            +KKF +RG  LD LL+M  DE +KL  +R RR  ++G   K   L+            G+  + ++TH+R+MII+PEM+G    VYNGK F + ++ PEMIGHYL EFSI+ K V+HG PG+ AT SS F+ +K
Sbjct:    9 WKKFRYRGKSLDELLNMPMDEFIKLLPSRQRRSLKKGFSDKQRRLLEKIRKYVRE---GKYSKTIKTHVRDMIILPEMVGLKFAVYNGKEFVEFQVVPEMIGHYLGEFSITTKKVEHGEPGLKATRSSLFLAMK 139          
BLAST of CB304435 vs. ExPASy Swiss-Prot
Match: RS19_THEVO (30S ribosomal protein S19P OS=Thermoplasma volcanium GN=rps19p PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 9.681e-27
Identity = 58/133 (43.61%), Postives = 86/133 (64.66%), Query Frame = -1
Query:  160 KKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIXXXXXXXXXXXPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 558
            K+FS++G  L+ L +MS +EL+K+  ARARR   R +      L+                + ++TH+R++II+P  +G I+ VYNG ++++ EIKPEMIGHYL EF ++ K VKH  PG+GAT SS+F+PLK
Sbjct:   28 KEFSYKGYTLEQLQEMSLEELIKILPARARRSLSREMNHDQKKLVEKLEGDY---------DDIKTHVRDVIILPSYVGKIVEVYNGNSYSKFEIKPEMIGHYLGEFVMTRKEVKHSGPGVGATRSSKFMPLK 151          
BLAST of CB304435 vs. ExPASy Swiss-Prot
Match: RS19_METB6 (30S ribosomal protein S19P OS=Methanoregula boonei (strain 6A8) GN=rps19p PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.264e-26
Identity = 62/136 (45.59%), Postives = 83/136 (61.03%), Query Frame = -1
Query:  160 RTFKKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIXXXXXXXXXXXPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 567
            R  ++F++RG  +D L  M   EL+ L  ARARR+F RGL R    L+                E +RTHLR MI++PEMIG  I +YNGK F +VE +PE + HYL EF+++ K V HG  GIGAT  S+++PLK
Sbjct:   13 RRREEFTYRGYKIDELKAMGLSELIPLMPARARRKFNRGLNRGEETLLEKIRGGD---------EKIRTHLREMIVMPEMIGKSIEIYNGKEFLKVEFQPESVFHYLGEFALTRKRVTHGSAGIGATRGSKYVPLK 139          
BLAST of CB304435 vs. ExPASy Swiss-Prot
Match: RS19_METS3 (30S ribosomal protein S19P OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=rps19p PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 1.651e-26
Identity = 57/133 (42.86%), Postives = 85/133 (63.91%), Query Frame = -1
Query:  160 KKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIXXXXXXXXXXXPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 558
            K F ++G  L+ L DMS +E+++LF AR RR  +RG   +   ++              +P  +RTH R+MI++PEM+G+  G+YNG+ F +V I+PEMIG Y  EF+ + + V+HG PG+GAT SS F+PLK
Sbjct:    4 KIFKYKGYTLEELQDMSLEEVMELFPARQRRSLKRGFLPRQQIVLDKMRKLNKEGSKDGRPVVIRTHCRDMIVLPEMVGTTFGIYNGQNFVEVTIEPEMIGCYFGEFAPTRQKVQHGDPGMGATRSSMFVPLK 136          
BLAST of CB304435 vs. ExPASy Swiss-Prot
Match: RS19_THESM (30S ribosomal protein S19P OS=Thermococcus sibiricus (strain MM 739 / DSM 12597) GN=rps19p PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 2.157e-26
Identity = 58/133 (43.61%), Postives = 88/133 (66.17%), Query Frame = -1
Query:  160 KKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIXXXXXXXXXXXPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 558
            K+F +RG   + L++MS ++L KL  +R RR  +RGL  +   L+            G+  +P+RTH R+M+I+PEM+G +I V+NGK F  V+I+ EMIGHY+ EF+++ K V+HG PG+GAT SS F+ +K
Sbjct:    5 KEFKYRGYTFEELINMSLEDLSKLLPSRQRRSLKRGLTPEQKKLLRKIRLAKK----GKYKKPIRTHSRDMVILPEMVGMMIYVHNGKEFVPVQIREEMIGHYIGEFALTRKRVQHGSPGVGATRSSMFVAIK 133          
The following BLAST results are available for this feature:
BLAST of CB304435 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
RS19_METJA1.764e-2846.2130S ribosomal protein S19P OS=Methanocaldococcus j... [more]
RS19_PYRHO2.304e-2849.6230S ribosomal protein S19P OS=Pyrococcus horikoshi... [more]
RS19_METKA3.009e-2846.7230S ribosomal protein S19P OS=Methanopyrus kandler... [more]
RS19_THEON6.704e-2847.3730S ribosomal protein S19P OS=Thermococcus onnurin... [more]
RS19_STAMF1.951e-2750.0030S ribosomal protein S19P OS=Staphylothermus mari... [more]
RS19_SULTO3.327e-2745.5230S ribosomal protein S19P OS=Sulfolobus tokodaii ... [more]
RS19_THEVO9.681e-2743.6130S ribosomal protein S19P OS=Thermoplasma volcani... [more]
RS19_METB61.264e-2645.5930S ribosomal protein S19P OS=Methanoregula boonei... [more]
RS19_METS31.651e-2642.8630S ribosomal protein S19P OS=Methanobrevibacter s... [more]
RS19_THESM2.157e-2643.6130S ribosomal protein S19P OS=Thermococcus sibiric... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0001_IIIaR_G10 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0001_IIIaR_G10 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304435 ID=CB304435; Name=CB304435; organism=Citrus sinensis; type=EST; length=570bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGATTAACAACTCAAACGCTA
GTATTTAGTCCAACAACCAAAAAAATGTAACCACAAAAAATTTGATCAAC
TTCAATGTTTTCTGAAAATAACAATAAGCTAAAATTCCAGATATCCAGCA
TACATCTCACTTAAGAGGAATGAACCTTGAGGAATGGGTAGCACCAATAC
CAGGTCTACCGTGCTTCACAGGCTTGTATGAGATAGAGAACTCAGCCAGG
TAATGCCCAATCATTTCCGGCTTAATTTCAACCTGATTAAAGGTCTTGCC
ATTGTACACTCCAATAATGCTTCCAATCATTTCAGGAACAATGATCATGT
TTCGCAAATGGGTGCGAACTGGTTCAGGCTTCTCACCAGGCGGAGCCTCC
CTTTTCGCCTTGCGAGGCTTCTTGATCAAAGCCATGGGCTTCCTCTTTAA
ACCCCTCTGAAACCTTCTGCGCGCACGTGCACTGAAGAGCTTGACGAGCT
CATCATTGGACATATCAAGAAGAGCGTCCAAATCCACGCCTCTGAAACTG
AACTTCTTGAACGTTCTCTT
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