CB304435

Overview
NameCB304435
Unique NameCB304435
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length570
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2117 contig Csv1_Contig2117:159..728. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304435 vs. ExPASy Swiss-Prot
Match: RS19_HALLT (30S ribosomal protein S19P OS=Halorubrum lacusprofundi (strain ATCC 49239 / DSM 5036 / JCM 8891 / ACAM 34) GN=rps19p PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 2.817e-26
Identity = 60/136 (44.12%), Postives = 84/136 (61.76%), Query Frame = -1
Query:  160 RTFKKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIXXXXXXXXXXXPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 567
            R  K+F++RG  LD L +M  DE+ +L  AR RR   RGL  +   L+                 P+RTHLR+M I+PE +G    VYNG +F +V+++PEMIGH+L EF ++   V+HG+ GIGAT SS+F+PLK
Sbjct:    9 REGKEFAYRGHSLDELQEMDVDEVAELLPARQRRSIVRGLGTEQQKLLEKVRSRDKETTADN---PIRTHLRDMPILPEFVGVTFSVYNGHSFERVQVEPEMIGHFLGEFHLTRSTVEHGQAGIGATRSSKFVPLK 141          
BLAST of CB304435 vs. ExPASy Swiss-Prot
Match: RS19_SULAC (30S ribosomal protein S19P OS=Sulfolobus acidocaldarius GN=rps19p PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 3.679e-26
Identity = 59/134 (44.03%), Postives = 85/134 (63.43%), Query Frame = -1
Query:  160 FKKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIXXXXXXXXXXXPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 561
            +KKF +RG  L+ LL+M  DE +KL  +R RR  +RG   K   L+            G++ + ++TH+RNM+I+PEM+G    VYNGK F + ++ PEMIG YL E+SI+ K V+HG PG+ AT SS F+ +K
Sbjct:    9 WKKFRYRGKSLEDLLNMPMDEFIKLLPSRQRRSLKRGFSDKQRRLLEKIRKISRE---GKQNKVIKTHVRNMVILPEMVGLRFAVYNGKEFVEFQVVPEMIGRYLGEYSITTKKVEHGEPGLKATKSSLFLAMK 139          
BLAST of CB304435 vs. ExPASy Swiss-Prot
Match: RS19_NATPD (30S ribosomal protein S19P OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=rps19p PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 3.679e-26
Identity = 59/132 (44.70%), Postives = 83/132 (62.88%), Query Frame = -1
Query:  160 KFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIXXXXXXXXXXXPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 555
            +F++RG  LD L +M  DE+ +L  AR RR  +RGL  +   L+                 P+RTHLR+M I+P  +G    VYNG++F +VE++PEMIGHYL EF ++   V+HG+ GIGAT SS+F+PLK
Sbjct:   12 EFTYRGHTLDELQEMELDEVAELLPARQRRTIKRGLSVEQEKLLDEAREAGEEETANN---PIRTHLRDMPILPRFVGLTFAVYNGQSFERVEVEPEMIGHYLGEFQLTRTSVEHGQAGIGATRSSKFVPLK 140          
BLAST of CB304435 vs. ExPASy Swiss-Prot
Match: RS19_PICTO (30S ribosomal protein S19P OS=Picrophilus torridus GN=rps19p PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 4.804e-26
Identity = 59/133 (44.36%), Postives = 88/133 (66.17%), Query Frame = -1
Query:  160 KKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIXXXXXXXXXXXPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 558
            K+FS+RG  L+ L +M  +EL+ L  ARARR + R +  +   L             G+K E ++TH+R++I++P+ +G  I +YNG ++ + EIKPEMIGHYL EF+++ K VKH  PG+GAT SS+F+PLK
Sbjct:   28 KEFSYRGHSLEELQNMELNELLPLLPARARRSYSRQMNHEQEKLYEKLL--------GDK-ENIKTHVRDLIVLPQFVGKTIELYNGNSYIKFEIKPEMIGHYLGEFALTRKEVKHSGPGVGATRSSKFLPLK 151          
BLAST of CB304435 vs. ExPASy Swiss-Prot
Match: RS19_METTH (30S ribosomal protein S19P OS=Methanobacterium thermoautotrophicum GN=rps19p PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 4.804e-26
Identity = 56/133 (42.11%), Postives = 84/133 (63.16%), Query Frame = -1
Query:  160 KKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIXXXXXXXXXXXPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 558
            K+F +RG  L+ L +M  D+++KLF +R RR  +RG   +   ++              +P  +RTH R+MI++PEM+G   G++NGK F +V+I+PEMIG Y  EF+ + K V+HG PG+GAT  S F+PLK
Sbjct:    4 KEFRYRGYTLEELQEMPLDDVIKLFPSRQRRSLKRGFLPRQKKVLEKIRKIKKEGKTEGRPPVIRTHCRDMIVLPEMVGMTFGIHNGKEFVEVKIQPEMIGCYFGEFAPTRKKVEHGDPGMGATRFSMFVPLK 136          
BLAST of CB304435 vs. ExPASy Swiss-Prot
Match: RS19_METMJ (30S ribosomal protein S19P OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=rps19p PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 4.804e-26
Identity = 61/136 (44.85%), Postives = 87/136 (63.97%), Query Frame = -1
Query:  160 RTFKKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIXXXXXXXXXXXPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 567
            R  ++F++RG  +  L  M+  EL+ L  ARARR+F RGL R+   L+                E +RTHLR+MII+PEM+G  I ++NGK F +VEI+PE + HYL EF+++ + V HG  GIGAT SS+++PLK
Sbjct:   11 RRREEFTYRGYSVADLQQMALSELLPLMPARARRKFDRGLSREHEKLLADLRSGD---------ENIRTHLRDMIIMPEMVGRSIEIHNGKEFQKVEIQPEAVFHYLGEFALTRRRVAHGSAGIGATRSSKYVPLK 137          
BLAST of CB304435 vs. ExPASy Swiss-Prot
Match: RS19_HALMA (30S ribosomal protein S19P OS=Haloarcula marismortui GN=rps19p PE=1 SV=4)

HSP 1 Score: 117.472 bits (293), Expect = 4.804e-26
Identity = 58/132 (43.94%), Postives = 84/132 (63.64%), Query Frame = -1
Query:  160 KFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIXXXXXXXXXXXPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 555
            +FSFRG  LD L +M  +E+ +L  AR RR   RGL  +   L+             +   P+RTHLR+M +VPEM+G    V++G+ F +V+++PEM+GHYL EF ++   V+HG+ GIGAT SS+F+PLK
Sbjct:   12 EFSFRGHTLDELQEMELEEVAELLPARQRRSIVRGLTEEKHKLLEKAREAGEEETAND---PIRTHLRDMPVVPEMVGLTFAVHDGQNFERVKVEPEMLGHYLGEFQLTRSSVEHGQAGIGATRSSKFVPLK 140          
BLAST of CB304435 vs. ExPASy Swiss-Prot
Match: RS19_HYPBU (30S ribosomal protein S19P OS=Hyperthermus butylicus (strain DSM 5456 / JCM 9403) GN=rps19p PE=3 SV=2)

HSP 1 Score: 117.087 bits (292), Expect = 6.275e-26
Identity = 64/134 (47.76%), Postives = 82/134 (61.19%), Query Frame = -1
Query:  160 FKKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIXXXXXXXXXXXPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 561
            +KKF +RG  L+ LL M  D+ +KL  AR RR   RGL      L+            G+K   V+TH+R+MII+PEM+G  I VYNGK F  V+I PEMIGHYL EFS + K V+HG PG+ AT S+  + LK
Sbjct:   12 WKKFRYRGYTLEELLAMPMDQFIKLLPARQRRSLLRGLTDAQRRLLWKIRKARQKMLQGKKVV-VKTHVRDMIILPEMVGLTIAVYNGKEFIPVKITPEMIGHYLGEFSPTCKQVQHGEPGLKATRSTLHVALK 144          
BLAST of CB304435 vs. ExPASy Swiss-Prot
Match: RS19_HALSA (30S ribosomal protein S19P OS=Halobacterium salinarium GN=rps19p PE=3 SV=2)

HSP 1 Score: 117.087 bits (292), Expect = 6.275e-26
Identity = 57/132 (43.18%), Postives = 83/132 (62.88%), Query Frame = -1
Query:  160 KFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIXXXXXXXXXXXPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 555
            +F++RG DLD L +MS +++ +L  AR RR   RGL  +   ++                 P+RTHLR+M ++PE +G    VY G+ F +VE++PEMIGHYL EF ++   V+HG+ GIGAT SS+F+PLK
Sbjct:   12 EFTYRGHDLDELQEMSLEDVAELLPARQRRTITRGLSEEHHKVLAEARESGTEETANN---PIRTHLRDMPVLPEFVGLTFAVYTGQEFERVEVQPEMIGHYLGEFQLTRSSVEHGQAGIGATRSSKFVPLK 140          
BLAST of CB304435 vs. ExPASy Swiss-Prot
Match: RS19_HALS3 (30S ribosomal protein S19P OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=rps19p PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 6.275e-26
Identity = 57/132 (43.18%), Postives = 83/132 (62.88%), Query Frame = -1
Query:  160 KFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIXXXXXXXXXXXPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 555
            +F++RG DLD L +MS +++ +L  AR RR   RGL  +   ++                 P+RTHLR+M ++PE +G    VY G+ F +VE++PEMIGHYL EF ++   V+HG+ GIGAT SS+F+PLK
Sbjct:   12 EFTYRGHDLDELQEMSLEDVAELLPARQRRTITRGLSEEHHKVLAEARESGTEETANN---PIRTHLRDMPVLPEFVGLTFAVYTGQEFERVEVQPEMIGHYLGEFQLTRSSVEHGQAGIGATRSSKFVPLK 140          
The following BLAST results are available for this feature:
BLAST of CB304435 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
RS19_HALLT2.817e-2644.1230S ribosomal protein S19P OS=Halorubrum lacusprof... [more]
RS19_SULAC3.679e-2644.0330S ribosomal protein S19P OS=Sulfolobus acidocald... [more]
RS19_NATPD3.679e-2644.7030S ribosomal protein S19P OS=Natronomonas pharaon... [more]
RS19_PICTO4.804e-2644.3630S ribosomal protein S19P OS=Picrophilus torridus... [more]
RS19_METTH4.804e-2642.1130S ribosomal protein S19P OS=Methanobacterium the... [more]
RS19_METMJ4.804e-2644.8530S ribosomal protein S19P OS=Methanoculleus maris... [more]
RS19_HALMA4.804e-2643.9430S ribosomal protein S19P OS=Haloarcula marismort... [more]
RS19_HYPBU6.275e-2647.7630S ribosomal protein S19P OS=Hyperthermus butylic... [more]
RS19_HALSA6.275e-2643.1830S ribosomal protein S19P OS=Halobacterium salina... [more]
RS19_HALS36.275e-2643.1830S ribosomal protein S19P OS=Halobacterium salina... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0001_IIIaR_G10 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0001_IIIaR_G10 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304435 ID=CB304435; Name=CB304435; organism=Citrus sinensis; type=EST; length=570bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGATTAACAACTCAAACGCTA
GTATTTAGTCCAACAACCAAAAAAATGTAACCACAAAAAATTTGATCAAC
TTCAATGTTTTCTGAAAATAACAATAAGCTAAAATTCCAGATATCCAGCA
TACATCTCACTTAAGAGGAATGAACCTTGAGGAATGGGTAGCACCAATAC
CAGGTCTACCGTGCTTCACAGGCTTGTATGAGATAGAGAACTCAGCCAGG
TAATGCCCAATCATTTCCGGCTTAATTTCAACCTGATTAAAGGTCTTGCC
ATTGTACACTCCAATAATGCTTCCAATCATTTCAGGAACAATGATCATGT
TTCGCAAATGGGTGCGAACTGGTTCAGGCTTCTCACCAGGCGGAGCCTCC
CTTTTCGCCTTGCGAGGCTTCTTGATCAAAGCCATGGGCTTCCTCTTTAA
ACCCCTCTGAAACCTTCTGCGCGCACGTGCACTGAAGAGCTTGACGAGCT
CATCATTGGACATATCAAGAAGAGCGTCCAAATCCACGCCTCTGAAACTG
AACTTCTTGAACGTTCTCTT
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