CB304435
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CB304435 vs. ExPASy Swiss-Prot
Match: RS19_HALLT (30S ribosomal protein S19P OS=Halorubrum lacusprofundi (strain ATCC 49239 / DSM 5036 / JCM 8891 / ACAM 34) GN=rps19p PE=3 SV=1) HSP 1 Score: 118.242 bits (295), Expect = 2.817e-26 Identity = 60/136 (44.12%), Postives = 84/136 (61.76%), Query Frame = -1 Query: 160 RTFKKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIXXXXXXXXXXXPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 567 R K+F++RG LD L +M DE+ +L AR RR RGL + L+ P+RTHLR+M I+PE +G VYNG +F +V+++PEMIGH+L EF ++ V+HG+ GIGAT SS+F+PLK Sbjct: 9 REGKEFAYRGHSLDELQEMDVDEVAELLPARQRRSIVRGLGTEQQKLLEKVRSRDKETTADN---PIRTHLRDMPILPEFVGVTFSVYNGHSFERVQVEPEMIGHFLGEFHLTRSTVEHGQAGIGATRSSKFVPLK 141
BLAST of CB304435 vs. ExPASy Swiss-Prot
Match: RS19_SULAC (30S ribosomal protein S19P OS=Sulfolobus acidocaldarius GN=rps19p PE=3 SV=1) HSP 1 Score: 117.857 bits (294), Expect = 3.679e-26 Identity = 59/134 (44.03%), Postives = 85/134 (63.43%), Query Frame = -1 Query: 160 FKKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIXXXXXXXXXXXPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 561 +KKF +RG L+ LL+M DE +KL +R RR +RG K L+ G++ + ++TH+RNM+I+PEM+G VYNGK F + ++ PEMIG YL E+SI+ K V+HG PG+ AT SS F+ +K Sbjct: 9 WKKFRYRGKSLEDLLNMPMDEFIKLLPSRQRRSLKRGFSDKQRRLLEKIRKISRE---GKQNKVIKTHVRNMVILPEMVGLRFAVYNGKEFVEFQVVPEMIGRYLGEYSITTKKVEHGEPGLKATKSSLFLAMK 139
BLAST of CB304435 vs. ExPASy Swiss-Prot
Match: RS19_NATPD (30S ribosomal protein S19P OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=rps19p PE=3 SV=1) HSP 1 Score: 117.857 bits (294), Expect = 3.679e-26 Identity = 59/132 (44.70%), Postives = 83/132 (62.88%), Query Frame = -1 Query: 160 KFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIXXXXXXXXXXXPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 555 +F++RG LD L +M DE+ +L AR RR +RGL + L+ P+RTHLR+M I+P +G VYNG++F +VE++PEMIGHYL EF ++ V+HG+ GIGAT SS+F+PLK Sbjct: 12 EFTYRGHTLDELQEMELDEVAELLPARQRRTIKRGLSVEQEKLLDEAREAGEEETANN---PIRTHLRDMPILPRFVGLTFAVYNGQSFERVEVEPEMIGHYLGEFQLTRTSVEHGQAGIGATRSSKFVPLK 140
BLAST of CB304435 vs. ExPASy Swiss-Prot
Match: RS19_PICTO (30S ribosomal protein S19P OS=Picrophilus torridus GN=rps19p PE=3 SV=1) HSP 1 Score: 117.472 bits (293), Expect = 4.804e-26 Identity = 59/133 (44.36%), Postives = 88/133 (66.17%), Query Frame = -1 Query: 160 KKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIXXXXXXXXXXXPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 558 K+FS+RG L+ L +M +EL+ L ARARR + R + + L G+K E ++TH+R++I++P+ +G I +YNG ++ + EIKPEMIGHYL EF+++ K VKH PG+GAT SS+F+PLK Sbjct: 28 KEFSYRGHSLEELQNMELNELLPLLPARARRSYSRQMNHEQEKLYEKLL--------GDK-ENIKTHVRDLIVLPQFVGKTIELYNGNSYIKFEIKPEMIGHYLGEFALTRKEVKHSGPGVGATRSSKFLPLK 151
BLAST of CB304435 vs. ExPASy Swiss-Prot
Match: RS19_METTH (30S ribosomal protein S19P OS=Methanobacterium thermoautotrophicum GN=rps19p PE=3 SV=1) HSP 1 Score: 117.472 bits (293), Expect = 4.804e-26 Identity = 56/133 (42.11%), Postives = 84/133 (63.16%), Query Frame = -1 Query: 160 KKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIXXXXXXXXXXXPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 558 K+F +RG L+ L +M D+++KLF +R RR +RG + ++ +P +RTH R+MI++PEM+G G++NGK F +V+I+PEMIG Y EF+ + K V+HG PG+GAT S F+PLK Sbjct: 4 KEFRYRGYTLEELQEMPLDDVIKLFPSRQRRSLKRGFLPRQKKVLEKIRKIKKEGKTEGRPPVIRTHCRDMIVLPEMVGMTFGIHNGKEFVEVKIQPEMIGCYFGEFAPTRKKVEHGDPGMGATRFSMFVPLK 136
BLAST of CB304435 vs. ExPASy Swiss-Prot
Match: RS19_METMJ (30S ribosomal protein S19P OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=rps19p PE=3 SV=1) HSP 1 Score: 117.472 bits (293), Expect = 4.804e-26 Identity = 61/136 (44.85%), Postives = 87/136 (63.97%), Query Frame = -1 Query: 160 RTFKKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIXXXXXXXXXXXPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 567 R ++F++RG + L M+ EL+ L ARARR+F RGL R+ L+ E +RTHLR+MII+PEM+G I ++NGK F +VEI+PE + HYL EF+++ + V HG GIGAT SS+++PLK Sbjct: 11 RRREEFTYRGYSVADLQQMALSELLPLMPARARRKFDRGLSREHEKLLADLRSGD---------ENIRTHLRDMIIMPEMVGRSIEIHNGKEFQKVEIQPEAVFHYLGEFALTRRRVAHGSAGIGATRSSKYVPLK 137
BLAST of CB304435 vs. ExPASy Swiss-Prot
Match: RS19_HALMA (30S ribosomal protein S19P OS=Haloarcula marismortui GN=rps19p PE=1 SV=4) HSP 1 Score: 117.472 bits (293), Expect = 4.804e-26 Identity = 58/132 (43.94%), Postives = 84/132 (63.64%), Query Frame = -1 Query: 160 KFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIXXXXXXXXXXXPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 555 +FSFRG LD L +M +E+ +L AR RR RGL + L+ + P+RTHLR+M +VPEM+G V++G+ F +V+++PEM+GHYL EF ++ V+HG+ GIGAT SS+F+PLK Sbjct: 12 EFSFRGHTLDELQEMELEEVAELLPARQRRSIVRGLTEEKHKLLEKAREAGEEETAND---PIRTHLRDMPVVPEMVGLTFAVHDGQNFERVKVEPEMLGHYLGEFQLTRSSVEHGQAGIGATRSSKFVPLK 140
BLAST of CB304435 vs. ExPASy Swiss-Prot
Match: RS19_HYPBU (30S ribosomal protein S19P OS=Hyperthermus butylicus (strain DSM 5456 / JCM 9403) GN=rps19p PE=3 SV=2) HSP 1 Score: 117.087 bits (292), Expect = 6.275e-26 Identity = 64/134 (47.76%), Postives = 82/134 (61.19%), Query Frame = -1 Query: 160 FKKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIXXXXXXXXXXXPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 561 +KKF +RG L+ LL M D+ +KL AR RR RGL L+ G+K V+TH+R+MII+PEM+G I VYNGK F V+I PEMIGHYL EFS + K V+HG PG+ AT S+ + LK Sbjct: 12 WKKFRYRGYTLEELLAMPMDQFIKLLPARQRRSLLRGLTDAQRRLLWKIRKARQKMLQGKKVV-VKTHVRDMIILPEMVGLTIAVYNGKEFIPVKITPEMIGHYLGEFSPTCKQVQHGEPGLKATRSTLHVALK 144
BLAST of CB304435 vs. ExPASy Swiss-Prot
Match: RS19_HALSA (30S ribosomal protein S19P OS=Halobacterium salinarium GN=rps19p PE=3 SV=2) HSP 1 Score: 117.087 bits (292), Expect = 6.275e-26 Identity = 57/132 (43.18%), Postives = 83/132 (62.88%), Query Frame = -1 Query: 160 KFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIXXXXXXXXXXXPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 555 +F++RG DLD L +MS +++ +L AR RR RGL + ++ P+RTHLR+M ++PE +G VY G+ F +VE++PEMIGHYL EF ++ V+HG+ GIGAT SS+F+PLK Sbjct: 12 EFTYRGHDLDELQEMSLEDVAELLPARQRRTITRGLSEEHHKVLAEARESGTEETANN---PIRTHLRDMPVLPEFVGLTFAVYTGQEFERVEVQPEMIGHYLGEFQLTRSSVEHGQAGIGATRSSKFVPLK 140
BLAST of CB304435 vs. ExPASy Swiss-Prot
Match: RS19_HALS3 (30S ribosomal protein S19P OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=rps19p PE=3 SV=1) HSP 1 Score: 117.087 bits (292), Expect = 6.275e-26 Identity = 57/132 (43.18%), Postives = 83/132 (62.88%), Query Frame = -1 Query: 160 KFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIXXXXXXXXXXXPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 555 +F++RG DLD L +MS +++ +L AR RR RGL + ++ P+RTHLR+M ++PE +G VY G+ F +VE++PEMIGHYL EF ++ V+HG+ GIGAT SS+F+PLK Sbjct: 12 EFTYRGHDLDELQEMSLEDVAELLPARQRRTITRGLSEEHHKVLAEARESGTEETANN---PIRTHLRDMPVLPEFVGLTFAVYTGQEFERVEVQPEMIGHYLGEFQLTRSSVEHGQAGIGATRSSKFVPLK 140 The following BLAST results are available for this feature:
BLAST of CB304435 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 83
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Sequences
The
following sequences are available for this feature:
EST sequence >CB304435 ID=CB304435; Name=CB304435; organism=Citrus sinensis; type=EST; length=570bpback to top |