CB304435

Overview
NameCB304435
Unique NameCB304435
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length570
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2117 contig Csv1_Contig2117:159..728. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304435 vs. ExPASy Swiss-Prot
Match: RS19_AERPE (30S ribosomal protein S19P OS=Aeropyrum pernix GN=rps19p PE=3 SV=3)

HSP 1 Score: 116.701 bits (291), Expect = 8.195e-26
Identity = 63/136 (46.32%), Postives = 83/136 (61.03%), Query Frame = -1
Query:  160 FKKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIXXXXXXXXXXXPG--EKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 561
            +KKF +RG  L+ LL M  +EL +LF AR RR   RGL      L+            G  ++P  +RTH+R+M+I+PEM+G  I VYNGK F  V+I PEMIGHYL EFS + + V+HG PG+ AT SS  +  K
Sbjct:    9 WKKFRYRGRTLEELLKMDIEELARLFPARQRRSLLRGLTPAQQKLLLKVRKIRRRLEEGRLKRPPVIRTHVRDMVILPEMVGLTIAVYNGKEFIPVKIVPEMIGHYLGEFSPTTRIVQHGEPGLKATRSSLHVASK 144          
BLAST of CB304435 vs. ExPASy Swiss-Prot
Match: RS19_METS5 (30S ribosomal protein S19P OS=Metallosphaera sedula (strain ATCC 51363 / DSM 5348) GN=rps19p PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.398e-25
Identity = 57/134 (42.54%), Postives = 83/134 (61.94%), Query Frame = -1
Query:  160 FKKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIXXXXXXXXXXXPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 561
            +KKF +RG  L+ LL+M  D+ +KL  AR RR  ++G       LI             +  +P++TH+R+++I+PEM+G    VYNGK F + ++ PEMIGHYL EFSI  + V+HG PG+ AT SS F+ +K
Sbjct:    9 WKKFRYRGKSLEELLNMPMDDFIKLLPARQRRSLRKGFTPSERTLIEKIRKIRRD---SKADKPIKTHVRSLVILPEMVGLKFAVYNGKQFVEFQVVPEMIGHYLGEFSIPIQKVEHGEPGLKATRSSLFMAMK 139          
BLAST of CB304435 vs. ExPASy Swiss-Prot
Match: RS19_THEAC (30S ribosomal protein S19P OS=Thermoplasma acidophilum GN=rps19p PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 3.114e-25
Identity = 59/133 (44.36%), Postives = 84/133 (63.16%), Query Frame = -1
Query:  160 KKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIXXXXXXXXXXXPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 558
            K+F+++G  L+ L  MS +EL+K+  ARARR   R    +   L+                E V+TH+R++II+P  +G I+ VYNG ++ + EIKPEMIGHYL EF ++ K VKH  PG+GAT SS+F+PLK
Sbjct:   28 KEFTYKGYSLEDLQKMSMEELIKILPARARRTLLREPNYEQKKLMEKLE---------SDEEDVKTHVRDVIILPNYVGKIVEVYNGNSYFKFEIKPEMIGHYLGEFVMTRKEVKHSGPGVGATRSSKFMPLK 151          
BLAST of CB304435 vs. ExPASy Swiss-Prot
Match: RS19_SULSO (30S ribosomal protein S19P OS=Sulfolobus solfataricus GN=rps19p PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 4.067e-25
Identity = 57/134 (42.54%), Postives = 83/134 (61.94%), Query Frame = -1
Query:  160 FKKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIXXXXXXXXXXXPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 561
            +K F +RG  +D LL+M  DE +KL  +R RR  +RG       L+            G+  + ++TH+RN++I+PE+IG  + VYNGK F +  + PEMIGHYL E+SI+ K V+HG PG+ AT SS F+ +K
Sbjct:    9 WKNFKYRGKSIDELLNMPMDEFIKLLPSRQRRSLKRGFTDAQRHLLEKVRKYRRE---GKFNKTIKTHVRNLVILPELIGLKMAVYNGKEFVEFTVTPEMIGHYLGEYSITTKKVEHGEPGLKATRSSLFLAMK 139          
BLAST of CB304435 vs. ExPASy Swiss-Prot
Match: RS19_IGNH4 (30S ribosomal protein S19P OS=Ignicoccus hospitalis (strain KIN4/I / DSM 18386 / JCM 14125) GN=rps19p PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 4.067e-25
Identity = 61/134 (45.52%), Postives = 82/134 (61.19%), Query Frame = -1
Query:  160 FKKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIXXXXXXXXXXXPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 561
            +KKF +RG  L+ LL+M  D+ ++L  AR RR  +RG       L+            G+K + +RTH+R+M+I+P M+G  I VYNGK F  V+I PEMIGHYL EFS +   VKHG PG+ AT SS F+  K
Sbjct:    7 WKKFRYRGKTLEELLEMPLDDFIELLPARQRRSLKRGFNDAQRRLLEKVLKARKEMEKGKKVK-IRTHVRDMVILPIMVGLTIEVYNGKEFVPVKIVPEMIGHYLGEFSHTTAVVKHGEPGLKATRSSLFVAAK 139          
BLAST of CB304435 vs. ExPASy Swiss-Prot
Match: RS19_ARCFU (30S ribosomal protein S19P OS=Archaeoglobus fulgidus GN=rps19p PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 5.312e-25
Identity = 57/133 (42.86%), Postives = 82/133 (61.65%), Query Frame = -1
Query:  160 KKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIXXXXXXXXXXXPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 558
            + F +RG  L+ L  M  +EL KL  AR RR+ +RG   +   L+              K    RTH R+M+++PEM+G ++ V+NGK F +VEIKPEMIGH L EF+++ +  KH  PG+GAT SS+++PLK
Sbjct:   11 RDFKYRGYTLEELQKMPLEELAKLLPARERRKIKRGFTEQEEKLLRKL----------RKKGTARTHCRDMVVLPEMVGKVVFVHNGKEFVRVEIKPEMIGHRLGEFALTRRFEKHSGPGVGATRSSKYVPLK 133          
BLAST of CB304435 vs. ExPASy Swiss-Prot
Match: RS19_HALWD (30S ribosomal protein S19P OS=Haloquadratum walsbyi (strain DSM 16790) GN=rps19p PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.183e-24
Identity = 58/132 (43.94%), Postives = 81/132 (61.36%), Query Frame = -1
Query:  160 KFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIXXXXXXXXXXXPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 555
            +F++RG  LD L  MS +++  L  AR RR  +RGL  +   L              +   P+RTHLR+M I+P  +   I VYNG++F +V I+PEMIGHYL EF ++   V+HG+ GIGAT SS+F+PLK
Sbjct:   12 EFTYRGHTLDELQAMSLEDITALLPARQRRTIERGLTTEQQKLRETVRDADPQKTAND---PIRTHLRDMPILPSFVEKTIAVYNGQSFERVRIEPEMIGHYLGEFQLTRTSVEHGQAGIGATRSSKFVPLK 140          
BLAST of CB304435 vs. ExPASy Swiss-Prot
Match: RS19_KORCO (30S ribosomal protein S19P OS=Korarchaeum cryptofilum (strain OPF8) GN=rps19p PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 2.019e-24
Identity = 58/133 (43.61%), Postives = 84/133 (63.16%), Query Frame = -1
Query:  160 KKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIXXXXXXXXXXXPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 558
            ++F +RG  L+ L  M+ DEL  +  +R RR  +RGL  +   L+                + +RTH R+M I+PEM+GS I V+NGK F ++ I PEMIGHYL EF+++ + V+HG+PG GAT SS+F+PLK
Sbjct:    4 REFRYRGYTLEQLQTMTLDELANVMPSRIRRTLKRGLSIENKKLLDKIRKYKAMGID----KVIRTHRRDMPILPEMVGSKIAVHNGKEFVEITIVPEMIGHYLGEFAMTNRIVRHGKPGKGATRSSKFVPLK 132          
BLAST of CB304435 vs. ExPASy Swiss-Prot
Match: RS19_CENSY (30S ribosomal protein S19P OS=Cenarchaeum symbiosum GN=rps19p PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 2.019e-24
Identity = 57/133 (42.86%), Postives = 80/133 (60.15%), Query Frame = -1
Query:  160 KKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIXXXXXXXXXXXPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 558
            KKF +RG   + L  M  D L +LF++R RR   RG+      LI            G++  P++THLR++I++P M G  + V++GK F  VEI  EMIGHYL E+ I+ K V HG PG+GA+ SS ++PLK
Sbjct:    3 KKFEYRGKPAEELESMPLDSLFRLFNSRQRRSLTRGITDGKRKLIREIKDARA----GKEGNPIKTHLRDLIVLPSMTGVTVNVFSGKEFRPVEITTEMIGHYLGEYVITNKRVSHGAPGVGASRSSLYVPLK 131          
BLAST of CB304435 vs. ExPASy Swiss-Prot
Match: RS19_THEPD (30S ribosomal protein S19P OS=Thermofilum pendens (strain Hrk 5) GN=rps19p PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 2.636e-24
Identity = 58/136 (42.65%), Postives = 83/136 (61.03%), Query Frame = -1
Query:  160 KFSFRGVDLDALLDMSNDELVKLFSARARRR----FQRGLKRKPMALIXXXXXXXXXXXPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 555
            KF++RG  L+ L  M  ++L ++  AR RR     F++G   + + L+            G+K   ++THLR+ II+PEM+G  I V+NGK F  VEI PE IGHYL EF+++ K V+HG PG+ AT SS F+ LK
Sbjct:    6 KFTYRGYTLEELRQMPIEKLAEIMPARQRRSLLRVFKQGTSEEHLKLLEKIRRAAKLASEGKKQPVIKTHLRDFIILPEMVGLTIHVHNGKEFVPVEITPEKIGHYLGEFALTTKKVEHGEPGLKATRSSMFVALK 141          
The following BLAST results are available for this feature:
BLAST of CB304435 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
RS19_AERPE8.195e-2646.3230S ribosomal protein S19P OS=Aeropyrum pernix GN=... [more]
RS19_METS51.398e-2542.5430S ribosomal protein S19P OS=Metallosphaera sedul... [more]
RS19_THEAC3.114e-2544.3630S ribosomal protein S19P OS=Thermoplasma acidoph... [more]
RS19_SULSO4.067e-2542.5430S ribosomal protein S19P OS=Sulfolobus solfatari... [more]
RS19_IGNH44.067e-2545.5230S ribosomal protein S19P OS=Ignicoccus hospitali... [more]
RS19_ARCFU5.312e-2542.8630S ribosomal protein S19P OS=Archaeoglobus fulgid... [more]
RS19_HALWD1.183e-2443.9430S ribosomal protein S19P OS=Haloquadratum walsby... [more]
RS19_KORCO2.019e-2443.6130S ribosomal protein S19P OS=Korarchaeum cryptofi... [more]
RS19_CENSY2.019e-2442.8630S ribosomal protein S19P OS=Cenarchaeum symbiosu... [more]
RS19_THEPD2.636e-2442.6530S ribosomal protein S19P OS=Thermofilum pendens ... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0001_IIIaR_G10 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0001_IIIaR_G10 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304435 ID=CB304435; Name=CB304435; organism=Citrus sinensis; type=EST; length=570bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGATTAACAACTCAAACGCTA
GTATTTAGTCCAACAACCAAAAAAATGTAACCACAAAAAATTTGATCAAC
TTCAATGTTTTCTGAAAATAACAATAAGCTAAAATTCCAGATATCCAGCA
TACATCTCACTTAAGAGGAATGAACCTTGAGGAATGGGTAGCACCAATAC
CAGGTCTACCGTGCTTCACAGGCTTGTATGAGATAGAGAACTCAGCCAGG
TAATGCCCAATCATTTCCGGCTTAATTTCAACCTGATTAAAGGTCTTGCC
ATTGTACACTCCAATAATGCTTCCAATCATTTCAGGAACAATGATCATGT
TTCGCAAATGGGTGCGAACTGGTTCAGGCTTCTCACCAGGCGGAGCCTCC
CTTTTCGCCTTGCGAGGCTTCTTGATCAAAGCCATGGGCTTCCTCTTTAA
ACCCCTCTGAAACCTTCTGCGCGCACGTGCACTGAAGAGCTTGACGAGCT
CATCATTGGACATATCAAGAAGAGCGTCCAAATCCACGCCTCTGAAACTG
AACTTCTTGAACGTTCTCTT
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