CB304435

Overview
NameCB304435
Unique NameCB304435
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length570
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB304435 vs. ExPASy Swiss-Prot
Match: RS19_METST (30S ribosomal protein S19P OS=Methanosphaera stadtmanae (strain DSM 3091) GN=rps19p PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 2.636e-24
Identity = 55/133 (41.35%), Postives = 81/133 (60.90%), Query Frame = -1
Query:  160 KKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIXXXXXXXXXXXPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 558
            K F FRG  L+ L +MS DE+++L  +R RR  +RG   +   ++              +P  ++TH R+MI++P M+G   G+YNG+ F +V I+PEMIG Y  EF+ +   V+HG PG+GAT SS F+PLK
Sbjct:    4 KIFKFRGYTLEELQEMSLDEVIELLPSRQRRSLKRGFLPRQEKVLDKMEKVKDMKNDSGRPIVIKTHCRDMIVLPNMVGYTFGIYNGQEFVEVTIQPEMIGCYFGEFAQTRGRVQHGDPGMGATRSSMFVPLK 136          
BLAST of CB304435 vs. ExPASy Swiss-Prot
Match: RS19_PYRAE (30S ribosomal protein S19P OS=Pyrobaculum aerophilum GN=rps19p PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 5.873e-24
Identity = 62/131 (47.33%), Postives = 80/131 (61.07%), Query Frame = -1
Query:  160 FSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIXXXXXXXXXXXPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 552
            F +RG  L+ LL+MS DE +KL  AR RR  +RGLK +   L+            G+K   +RTH R+MII+PEM+G  I VYNG T+  V I P  IGHYL EF+++ K V+HG PG+ AT SS  I  K
Sbjct:   29 FRYRGKTLEELLNMSMDEFIKLLPARQRRSLKRGLKPEHRKLLEKIRKAKRLAAQGKKVV-IRTHCRDMIILPEMVGLTIHVYNGITYIPVFISPWHIGHYLGEFALTTKIVQHGEPGLKATRSSLHIAAK 158          
BLAST of CB304435 vs. ExPASy Swiss-Prot
Match: RS19_NITMS (30S ribosomal protein S19P OS=Nitrosopumilus maritimus (strain SCM1) GN=rps19p PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 2.232e-23
Identity = 54/133 (40.60%), Postives = 84/133 (63.16%), Query Frame = -1
Query:  160 KKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIXXXXXXXXXXXPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 558
            K+F++RG+  + L +MS ++L +LF+AR RR   RG+      LI            G+   P++TH+R++II+P M+   + V++GK F  V I+ EMIGHYL E+ I+ + V HG PG+GA+ SS ++PLK
Sbjct:    3 KEFAYRGIPKEELDNMSLEKLFQLFNARQRRSLTRGITDGKRKLIEEIKAAKA----GKLKNPIKTHVRDLIILPYMVDVTVNVFSGKEFRPVTIRTEMIGHYLGEYVITNRKVSHGAPGVGASRSSLYVPLK 131          
BLAST of CB304435 vs. ExPASy Swiss-Prot
Match: RS19_PYRIL (30S ribosomal protein S19P OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) GN=rps19p PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 2.915e-23
Identity = 61/131 (46.56%), Postives = 79/131 (60.31%), Query Frame = -1
Query:  160 FSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIXXXXXXXXXXXPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 552
            F +RG  L+ LL+M  DE +KL  AR RR  +RGLK +   L+            G+K   ++TH R+MII+PEM+G  I VYNG T+  V I P  IGHYL EF+I+ K V+HG PG+ AT SS  I  K
Sbjct:   31 FRYRGKTLEELLNMPMDEFIKLLPARQRRSLKRGLKPEHRKLLEKIRKAKKLMAQGKKVV-IKTHCRDMIILPEMVGLTIHVYNGITYIPVFISPWHIGHYLGEFAITTKIVQHGEPGLKATRSSLHIAAK 160          
BLAST of CB304435 vs. ExPASy Swiss-Prot
Match: RS19_METTP (30S ribosomal protein S19P OS=Methanosaeta thermophila (strain DSM 6194 / PT) GN=rps19p PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 2.915e-23
Identity = 56/136 (41.18%), Postives = 84/136 (61.76%), Query Frame = -1
Query:  160 KKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLK---RKPMALIXXXXXXXXXXXPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 558
            ++F++RG  +  L  M  +E+ +L  +R RR  +RGL    RK MA +                   +THLR+ I++PEM+G ++ ++NGKTF +VEI PEMIGHYL E++++   V HG  G+GAT SS+F+PLK
Sbjct:   14 EEFTYRGYRVSELAKMRLEEIAELLPSRQRRTLRRGLSKEHRKFMAKLRARGT-------------AKTHLRDAIVLPEMVGKVVEIHNGKTFQRVEIIPEMIGHYLGEYALTRARVIHGAAGVGATRSSKFVPLK 136          
BLAST of CB304435 vs. ExPASy Swiss-Prot
Match: RS19_PYRAR (30S ribosomal protein S19P OS=Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321) GN=rps19p PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 3.807e-23
Identity = 60/131 (45.80%), Postives = 79/131 (60.31%), Query Frame = -1
Query:  160 FSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIXXXXXXXXXXXPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 552
            F +RG  L+ LL+M  DE +KL  AR RR  +RGLK +   L+            G+K   ++TH R+MII+PEM+G  I VYNG T+  V I P  IGHYL EF+++ K V+HG PG+ AT SS  I  K
Sbjct:   30 FRYRGKTLEELLNMPMDEFIKLLPARQRRSLKRGLKPEHRKLLEKIRKAKRLAAQGKKVV-IKTHCRDMIILPEMVGLTIQVYNGITYIPVYISPWHIGHYLGEFALTTKIVQHGEPGLKATRSSLHIAAK 159          
BLAST of CB304435 vs. ExPASy Swiss-Prot
Match: RS19_CALMQ (30S ribosomal protein S19P OS=Caldivirga maquilingensis (strain DSMZ 13496 / IC-167) GN=rps19p PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 3.807e-23
Identity = 61/134 (45.52%), Postives = 78/134 (58.21%), Query Frame = -1
Query:  160 FKKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIXXXXXXXXXXXPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 561
            +K F +RG   D L+ M  +E +KL  AR RR  +RGL+     L+            G K  PVRTH R+MII+PEM+G  I VYNG T+  V I P  IGHYL EF+I+ K V+HG PG+ AT S+  I  K
Sbjct:   55 WKNFKYRGFTFDELMKMPMNEFIKLLPARQRRTLKRGLRPCHRQLLEKIRKAKAFAAKG-KSIPVRTHCRDMIILPEMVGLTIFVYNGITYIPVPISPWHIGHYLGEFAITTKIVQHGEPGLKATKSTLHIAAK 187          
BLAST of CB304435 vs. ExPASy Swiss-Prot
Match: RS19_NANEQ (30S ribosomal protein S19P OS=Nanoarchaeum equitans GN=rps19p PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 6.493e-23
Identity = 59/133 (44.36%), Postives = 75/133 (56.39%), Query Frame = -1
Query:  160 KKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIXXXXXXXXXXXPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 558
            K+F ++G  L  L  MS +EL K+  AR RR   R LK                   G+  +P++TH RN II+P M+G  + VYNGK +  V+IKPEMIGHYL EFS + K  KH  PGIGAT SS  +  K
Sbjct:    8 KEFRYKGYTLQELEQMSLEELAKIMPARQRRTLLRRLKFGWSDQQKKLFKKILLAKEGKYKKPIKTHARNTIILPFMVGVTVHVYNGKEYVPVQIKPEMIGHYLGEFSFTTKRPKHSAPGIGATRSSAHVSKK 140          
BLAST of CB304435 vs. ExPASy Swiss-Prot
Match: RS19_THENV (30S ribosomal protein S19P OS=Thermoproteus neutrophilus (strain DSM 2338 / JCM 9278 / V24Sta) GN=rps19p PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 8.481e-23
Identity = 59/131 (45.04%), Postives = 79/131 (60.31%), Query Frame = -1
Query:  160 FSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIXXXXXXXXXXXPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 552
            F +RG  L+ LL++  DE +KL  AR RR  +RGLK +   L+            G+K   ++TH R+MII+PEM+G  I VYNG T+  V I P  IGHYL EF+++ K V+HG PG+ AT SS  I  K
Sbjct:   29 FRYRGKTLEELLNLPMDEFIKLLPARQRRSLKRGLKPEHRKLLEKIRKAKRLAAQGKKVT-IKTHSRDMIILPEMVGLTIHVYNGITYIPVFISPWHIGHYLGEFALTTKVVQHGEPGLKATRSSLHIAAK 158          
BLAST of CB304435 vs. ExPASy Swiss-Prot
Match: RS19_PYRCJ (30S ribosomal protein S19P OS=Pyrobaculum calidifontis (strain JCM 11548 / VA1) GN=rps19p PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 8.481e-23
Identity = 59/131 (45.04%), Postives = 79/131 (60.31%), Query Frame = -1
Query:  160 FSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIXXXXXXXXXXXPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 552
            F +RG  L+ LL+M  DE +KL  AR RR  +RGLK +   L+            G+K   ++TH R+MII+PEM+G  I VYNG T+  V I P  IGHYL EF+++ + V+HG PG+ AT SS  I  K
Sbjct:   29 FRYRGKTLEELLNMPMDEFIKLLPARQRRSLKRGLKPEHRKLLEKIRKAKRLMAQGKKVT-IKTHCRDMIILPEMVGLTIHVYNGITYIPVFISPWHIGHYLGEFALTTRIVQHGEPGLKATRSSLHIAAK 158          
The following BLAST results are available for this feature:
BLAST of CB304435 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
RS19_METST2.636e-2441.3530S ribosomal protein S19P OS=Methanosphaera stadt... [more]
RS19_PYRAE5.873e-2447.3330S ribosomal protein S19P OS=Pyrobaculum aerophil... [more]
RS19_NITMS2.232e-2340.6030S ribosomal protein S19P OS=Nitrosopumilus marit... [more]
RS19_PYRIL2.915e-2346.5630S ribosomal protein S19P OS=Pyrobaculum islandic... [more]
RS19_METTP2.915e-2341.1830S ribosomal protein S19P OS=Methanosaeta thermop... [more]
RS19_PYRAR3.807e-2345.8030S ribosomal protein S19P OS=Pyrobaculum arsenati... [more]
RS19_CALMQ3.807e-2345.5230S ribosomal protein S19P OS=Caldivirga maquiling... [more]
RS19_NANEQ6.493e-2344.3630S ribosomal protein S19P OS=Nanoarchaeum equitan... [more]
RS19_THENV8.481e-2345.0430S ribosomal protein S19P OS=Thermoproteus neutro... [more]
RS19_PYRCJ8.481e-2345.0430S ribosomal protein S19P OS=Pyrobaculum calidifo... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0001_IIIaR_G10 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0001_IIIaR_G10 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304435 ID=CB304435; Name=CB304435; organism=Citrus sinensis; type=EST; length=570bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGATTAACAACTCAAACGCTA
GTATTTAGTCCAACAACCAAAAAAATGTAACCACAAAAAATTTGATCAAC
TTCAATGTTTTCTGAAAATAACAATAAGCTAAAATTCCAGATATCCAGCA
TACATCTCACTTAAGAGGAATGAACCTTGAGGAATGGGTAGCACCAATAC
CAGGTCTACCGTGCTTCACAGGCTTGTATGAGATAGAGAACTCAGCCAGG
TAATGCCCAATCATTTCCGGCTTAATTTCAACCTGATTAAAGGTCTTGCC
ATTGTACACTCCAATAATGCTTCCAATCATTTCAGGAACAATGATCATGT
TTCGCAAATGGGTGCGAACTGGTTCAGGCTTCTCACCAGGCGGAGCCTCC
CTTTTCGCCTTGCGAGGCTTCTTGATCAAAGCCATGGGCTTCCTCTTTAA
ACCCCTCTGAAACCTTCTGCGCGCACGTGCACTGAAGAGCTTGACGAGCT
CATCATTGGACATATCAAGAAGAGCGTCCAAATCCACGCCTCTGAAACTG
AACTTCTTGAACGTTCTCTT
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